Thomas Frank
@frankfishlab.bsky.social
📤 496
📥 279
📝 4
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Thomas Frank
Daniel Münch
10 days ago
New paper with
@gili-ezranevo.bsky.social
& Silvia Henriques from
@ribeirocarlitos.bsky.social
's lab out in
@currentbiology.bsky.social
. Appetite, driven by amino acid need 🥚🍖 reshapes olfactory receptor expression so flies 🪰 seek bacteria 🦠 and fermented cues 🥫 to restore nutritional balance ⚖️.
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Thomas Frank
Pawel Burkhardt
11 days ago
First neurons didn’t appear overnight. We trace their roots to ancient secretory cells - showing how lifestyle & behavior shaped the evolution of first synapses.🧠🌊
#Evolution
#Neuroscience
Our latest in
@natrevneuro.nature.com
Link:
rdcu.be/eMX3E
@jeffcolgren.bsky.social
@msarscentre.bsky.social
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The evolutionary origins of synaptic proteins and their changing roles in different organisms across evolution
Nature Reviews Neuroscience - Recent studies have shed further light on the evolutionary origins of chemical synapses, In this Review, Colgren and Burkhardt explore how ancient proteins were...
https://rdcu.be/eMX3E
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Neil Shubin
12 months ago
Your reminder that many of the muscles, nerves and bones you use to hear and talk with correspond to gill structures in fish. 🧪
#evolution
#paleontology
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Matt Lovett-Barron
about 1 month ago
Our latest study on the neurobiology of collective behavior is now posted as a preprint, led by UCSD PhD student Jo-Hsien Yu
@anitajhyu.bsky.social
@ucsandiego.bsky.social
@danionella.bsky.social
www.biorxiv.org/content/10.1...
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Nicole Rust
about 1 month ago
The most universally agreed upon property that sets emotion/affect apart from everything else is valence: approach/avoid; pleasant/unpleasant. Here they target its computation in flies, where you can really figure out the biology. We know so little about how valence is computed by brains. Exciting!
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Katrin Vogt
about 1 month ago
How is valence computed in the brain? Check out our new preprint about a single cell that integrates excitatory and inhibitory input across modalities according to valence and impacts behavioral decisions. An exciting collaboration across many labs. Enjoy reading!
www.biorxiv.org/content/10.1...
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A multisensory, bidirectional, valence encoder guides behavioral decisions
A key function of the brain is to categorize sensory cues as repulsive or attractive and respond accordingly. While we have some understanding of how sensory information is processed in the sensory pe...
https://www.biorxiv.org/content/10.1101/2025.09.26.678749v1
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Raunak Basu
about 1 month ago
Ever wonder if there are spatial maps in the brain outside the hippocampal-entorhinal regions? In this preprint, we describe a novel spatial map in the orbitofrontal cortex (OFC) that preserves the topological arrangements and distance between locations. However, ...
www.biorxiv.org/cgi/content/...
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The orbitofrontal cortex forms a context-generalized spatial schema that preserves topology and distance
Flexible and efficient navigation requires the brain to construct maps that are both topological, preserving the relationships between locations, and schematic, enabling generalization across environm...
https://www.biorxiv.org/cgi/content/short/2025.09.15.676202v1
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Thomas Frank
Dr. Liz Haynes 🐟🔬
about 1 month ago
Want to image the adult zebrafish brain? Here's a nifty design that I made with the help of a talented master's student, Corey Steinhauser. Supporting files here!
morgridge.org/research/lab...
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Emre Yaksi
about 2 months ago
Check out this exciting study led by Anh-Tuan Trinh from our lab, where we investigated how thalamocortical-like circuits in the zebrafish pallium receive, represent, and integrate sensory information: 🔗
doi.org/10.1101/2025...
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Hierarchical processing of sensory information across topographically organized thalamocortical-like circuits in the zebrafish brain
Thalamocortical projections contribute to the spatial organization and functional hierarchies of the mammalian cortex. Primary sensory cortices receive topographically segregated information from firs...
https://doi.org/10.1101/2025.09.15.675867
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Emilie Macé
about 2 months ago
We currently have open positions for PhD and Postdocs! Interested in learning fUS: please apply!
brainwidenetworks.uni-goettingen.de/open-positio...
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Exciting new results now published in Science: responses to visual objects are boosted in the brain's spatial navigation system. Read more in the thread below! Congratulations to all the authors!!
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about 2 months ago
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Thomas Frank
Viola Priesemann
4 months ago
Physik studieren? Oder ein anderes Fach? In Göttingen geht jetzt beides, mit dem "Bachelor Interdisziplinär", der Physik mit spannenden Disziplinen Eurer Wahl, wie z.B. Künstlicher Intelligenz, Philosophie, Neurowissenschaften, ... kombiniert.
www.uni-goettingen.de/de/studium/6...
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Studiengang Physik interdisziplinär - Georg-August-Universität Göttingen
Webseiten der Georg-August-Universität Göttingen
https://www.uni-goettingen.de/de/studium/696296.html
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Thomas Frank
The Transmitter
3 months ago
A. James Hudpseth, who died 16 August at age 79, devoted his 50-year career to untangling how the ear converts sound into electrical signals. By
@callimcflurry.bsky.social
www.thetransmitter.org/hearing/reme...
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Remembering A. James Hudspeth, hair cell explorer
Hudspeth, who died 16 August at age 79, devoted his 50-year career to untangling how the ear converts sound into electrical signals.
https://www.thetransmitter.org/hearing/remembering-a-james-hudspeth-hair-cell-explorer/?utm_source=bluesky&utm_medium=org-social&utm_campaign=20250822-obit-james-hudspeth
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Kristen Kwan
4 months ago
🚨🚨🚨 Tol2kit announcement! We have rebuilt the wiki that was corrupted a few months ago! We’re in the process of also linking it to the original address. Please visit us here:
tol2kitkwan.genetics.utah.edu
Thank you for your patience!!
#zebrafish
#transgenesis
#plasmids
#sharing
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tol2kit for kwan lab
https://tol2kitkwan.genetics.utah.edu/index.php/Main_Page
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Thomas Frank
Dinu F Albeanu
8 months ago
New preprint on common algorithms and evolutionary inventions that may account for apparent idiosyncratic encoding of odor concentration across species millions of years apart by taking advantage of divisive normalization: steered by Yang Shen,
@arkarupbanerjee.bsky.social
and Saket Navlakha. 1/3
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An evolutionarily conserved scheme for reformatting odor concentration in early olfactory circuits
Understanding how stimuli from the sensory periphery are progressively reformatted to yield useful representations is a fundamental challenge in neuroscience. In olfaction, assessing odor concentration is key for many behaviors, such as tracking and navigation. Initially, as odor concentration increases, the average response of first-order sensory neurons also increases. However, the average response of second-order neurons remains flat with increasing concentration – a transformation that is believed to help with concentration-invariant odor identification, but that seemingly discards concentration information before it could be sent to higher brain regions. By combining neural data analyses from diverse species with computational modeling, we propose strategies by which second-order neurons preserve concentration information, despite flat mean responses at the population level. We find that individual second-order neurons have diverse concentration response curves that are unique to each odorant — some neurons respond more with higher concentration and others respond less — and together this diversity generates distinct combinatorial representations for different concentrations. We show that this encoding scheme can be recapitulated using a circuit computation, called divisive normalization, and we derive sufficient conditions for this diversity to emerge. We then discuss two mechanisms (spike rate vs. timing based) by which higher order brain regions may decode odor concentration from the reformatted representations. Since vertebrate and invertebrate olfactory systems likely evolved independently, our findings suggest that evolution converged on similar algorithmic solutions despite stark differences in neural circuit architectures. Finally, in land vertebrates a parallel olfactory pathway has evolved whose second-order neurons do not exhibit such diverse response curves; rather neurons in this pathway represent concentration information in a more monotonic fashion on average, potentially allowing for easier odor localization and identification at the expense of increased energy use. ### Competing Interest Statement The authors have declared no competing interest.
https://doi.org/10.1101/2025.01.23.634259
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Thomas Frank
Zebrafish Rock!
8 months ago
🔗 to original research:
www.nature.com/articles/s42...
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Thomas Frank
Jan-Matthis Lueckmann
8 months ago
⚡️ Excited to introduce ZAPBench, our
#ICLR2025
spotlight: The Zebrafish Activity Prediction Benchmark measures progress in predicting neural activity within an entire vertebrate brain (70k+ neurons!) Explore interactive visualizations, datasets, code + paper:
google-research.github.io/zapbench
🧠🧪
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ZAPBench
ZAPBench evaluates how well different models can predict the activity of over 70,000 neurons in a novel larval zebrafish dataset.
https://google-research.github.io/zapbench
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Thomas Frank
Claire MB
9 months ago
New paper! We studied how inhibitory circuits shape the processing of olfactory information using a tight interplay between modeling and experiments. Collaboration between
@fmiscience.bsky.social
and
@frankfishlab.bsky.social
.
doi.org/10.1016/j.ce...
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https://doi.org/10.1016/j.celrep.2025.115330
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Exciting opportunity! Strongly encourage to apply.
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11 months ago
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Thomas Frank
Adrien Peyrache
11 months ago
🚨New(ish) preprint In mice, visual objects are encoded in the navigation syst, not much in the visual cx, certainly because they are used for orientation. This new version now includes cool comp work from
@dlevenstein.bsky.social
using
@kenmiller.bsky.social
's SSNs.
www.biorxiv.org/content/10.1...
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Visual objects refine head direction coding
Animals use visual objects to guide navigation-related behaviors, from hunting prey, to escaping predators, to exploring the world. However, little is known about where visual objects are encoded in t...
https://www.biorxiv.org/content/10.1101/2024.10.21.619417v2.abstract
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Thomas Frank
Kevin Mitchell
11 months ago
Order matters: neurons in the human brain fire in sequences that encode information
www.nature.com/articles/d41...
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Order matters: neurons in the human brain fire in sequences that encode information
A timing-based code for semantic knowledge in humans complements the established role of firing rates in neural coding.
https://www.nature.com/articles/d41586-024-03835-y
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Very exciting work! Congratulations to the entire team.
add a skeleton here at some point
12 months ago
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Thomas Frank
Micah G. Allen
about 1 year ago
Starter packs are great, but they can only have 150 accounts on them. Check out my much larger list of Brain and Mind researchers here - and let me know if you would like to be added!
#neuroskyence
#psychscisky
bsky.app/profile/mica...
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Nicole Rust
12 months ago
Flushed cheeks, racing hearts, nervous tummies - all the stuff of where emotion meets interoception (the feeling of what's happening in our bodies). Which brain region seems to be involved? You guessed it, Insula! It's Day 5 of Insula week; let's talk about emotion & interoception. (A thread).
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Thomas Frank
Gergő A. Nagy
about 2 years ago
Aversive stimulus-tuned responses in the CA1 of the dorsal hippocampus
www.nature.com/articles/s41...
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Aversive stimulus-tuned responses in the CA1 of the dorsal hippocampus - Nature Communications
How fearful events are represented in the hippocampus remains unclear. Here, the authors describe aversive stimulus-triggered single neuron and population responses as well as alterations of the spati...
https://www.nature.com/articles/s41467-023-42611-w
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Thomas Frank
Guido Meijer
about 2 years ago
We're happy to share the extension of the ZETA-test into a full-fledged statistical family. 📈👨👩👧👦 Now you can also include more cells in your GCaMP data, and perform two-sample comparisons, all binning-free! With Jorrit Montijn and Alexander Heimel.
www.biorxiv.org/content/10.1...
#neuroscience
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Thomas Frank
bioRxiv Neuroscience
about 2 years ago
Synaptic Zn2+ contributes to deleterious consequences of spreading depolarizations https://www.biorxiv.org/content/10.1101/2023.10.27.564408v1
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Synaptic Zn2+ contributes to deleterious consequences of spreading depolarizations https://www.biorxiv.org/content/10.1101/2023.10.27.564408v1
Spreading depolarizations (SDs) are profound waves of neuroglial depolarization that can propagate r
https://www.biorxiv.org/content/10.1101/2023.10.27.564408v1
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Thomas Frank
Florian Jug
about 2 years ago
😱📣 BlueSky-ers: WE NEED YOUR HELP!!! 🙏 All of you who ever liked a lecture of mine... All of you who liked one of the courses I teach in... All of you I work(ed) with in one way or another... All of you who see my desperation! 😜 PLEASE re-post! 🙏
careers.humantechnopole.it/o/postdoc-in...
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Postdocs in Artificial Intelligence
Human Technopole (HT) is an interdisciplinary life science research institute, created and supported by the Italian Government, with the aim of developing innovative strategies to improve human health
https://careers.humantechnopole.it/o/postdoc-in-life-sciences
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Thomas Frank
Vincent Taschereau-Dumouchel
about 2 years ago
In our new pre-print, we found that "fear profiles" can be decoded from the ventral visual stream whether participants report being afraid of the stimuli or not. It is the interaction between the prefrontal and visual cortices that seemed to support subjective fear
www.biorxiv.org/content/10.1...
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Thomas Frank
Zebrafish Rock!
about 2 years ago
Cited more than 1300 times, 'The behaviour and ecology of the zebrafish, Danio rerio' by Spence et al. (2007) highlights the special abilities of a small cyprinid found on the Indian subcontinent. A more recent take by Parichy (2015) expands on this in the context of evolution.
#ZebrafishFunFacts
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Thomas Frank
Mackenzie Weygandt Mathis
about 2 years ago
I’m hiring!! Want to join our team? We need another software engineer! 🔥 hit me up on Linkedin ⬇️
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Mackenzie Mathis, PhD on LinkedIn: The Mathis Lab of Adaptive Motor Control
NEW! Software engineer position in NeuroAI 🔥 The Mathis Group of Computational Neuroscience & AI (UPAMATHIS, https://mathisgroup.org) and Mathis Laboratory…
https://www.linkedin.com/posts/mackenziemathis_the-mathis-lab-of-adaptive-motor-control-activity-7115645199027957760-j8Ej?utm_source=share&utm_medium=member_ios
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Thomas Frank
Zebrafish Rock!
about 2 years ago
The shoal is up over 200 now 🤩 If you are looking for
#zebrafish
tweeps to follow, check our followers list. Most have found us 🙏
#RockOn
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Thomas Frank
bioRxiv Neuroscience
about 2 years ago
Differential encoding of odor and place in mouse piriform and entorhinal cortex https://www.biorxiv.org/content/10.1101/2023.10.05.561119v1
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Differential encoding of odor and place in mouse piriform and entorhinal cortex https://www.biorxiv.org/content/10.1101/2023.10.05.561119v1
Associating odor cues with spatial information in the environment is critical for animal behavior. T
https://www.biorxiv.org/content/10.1101/2023.10.05.561119v1
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Thomas Frank
Micah G. Allen
about 2 years ago
#compneuro 🧠🤖
add a skeleton here at some point
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Thomas Frank
Michael Okun
about 2 years ago
Brain state transitions primarily impact the spontaneous rate of slow-firing neurons - now out in CellReports
doi.org/10.1016/j.ce...
#neuroskyence #compneuro
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https://doi.org/10.1016/j.celrep.2023.113185
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Celtic Karla
about 2 years ago
Indiana University Bloomington is hiring assistant professor in Animal Behavior. #neurojobs #neuroscience
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Thomas Frank
CLaE
about 2 years ago
Nature Neuroscience Interoceptive rhythms in the
www.nature.com/articles/s41...
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Interoceptive rhythms in the brain - Nature Neuroscience
Engelen et al. review in animals and humans how the CNS senses cardiac, respiratory and gastric rhythmic activity, and detail the range of cognitive functions impacted, from perceptual detection up to...
https://www.nature.com/articles/s41593-023-01425-1
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Thomas Frank
bioRxiv Neuroscience
about 2 years ago
A developmentally defined population of neurons in the lateral septum controls responses to aversive stimuli https://www.biorxiv.org/content/10.1101/2023.09.24.559205v1
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A developmentally defined population of neurons in the lateral septum controls responses to aversive stimuli https://www.biorxiv.org/content/10.1101/2023.09.24.559205v1
When interacting with their environment, animals must balance exploratory and defensive behavior to
https://www.biorxiv.org/content/10.1101/2023.09.24.559205v1
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Thomas Frank
Zebrafish Rock!
about 2 years ago
With more than 12,250 citations, “Stages of embryonic development of the zebrafish.” by Kimmel CB et al. is the most cited #zebrafish paper. In fact, one out of every five zebrafish papers cites this landmark. It was first published in Developmental Dynamics in 1995. #ZebrafishFunFacts
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Thomas Frank
CLaE
about 2 years ago
Hello! Blue Sky! #HiSciSky
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