It is always a lot of fun to share science. So happy to take part in the @mpibiochem.bsky.social Open Day!

Are you looking for a PhD? Join us in Barcelona! You'll dive into a community of >100 PhD students from 30 countries exploring the frontiers of biology. You can also join an online workshop on 6 November (15:00 CET) to learn how to find the right lab for you. More info: www.crg.eu/en/content/t...

Torna l'OBCatalunya que arriba a la 16a edició‼️ Repetim l'experiència i esperonem les vocacions científiques i el gaudi de la Biologia 🔔 Docents de #biologia, ja podeu inscriure els vostres alumnes 🔚 9/12 🔗 https://cbiolegs.cat/2025/10/21/torna-olimpiada-de-biologia-de-catalunya-obc-2026/

Here our next RNA Club! 📅 24/09/25 📍 @mpibiochem.bsky.social We will hear great talks from Selay Kaya (Nedialkova lab), Pierfrancesco D'Orlando (Rad lab), Gesine Behrens (Heissmeyer lab), Christopher Kuhn (Conti lab) and Kathrin Halter (Carell lab)! See you there!

Congrats for the poster prize at #EMBLProtein, Xavi @xavierheal.bsky.social‬ ! Wonderful to dissect the translational response to metabolic shifts with time series of ribosome profiling and AI. Exciting multidisciplinary project. So glad to work with you and Danny Nedialkova on this.

Exciting science at the #EMBLProtein meeting, and still one more day ahead! If you missed it, come today by my poster 130 to learn about our work at Nedialkova's @mpibiochem.bsky.social and @gagneurlab.bsky.social !

🚨🚨🚨 Please RT! We're looking for a postdoc to join an exciting joint project between our lab @upf.edu & @crg.eu (Barcelona) and the Sander lab @mdc-berlin.bsky.social (Berlin) investigating how alternative splicing and microexons influences the maturation of pancreatic islets. Deadline: 30/09/25👇

Extremely vibrant and amazing science at the EMBO Fellows' meeting, thank you @embo.org for organizing! It is so exciting getting to know so many excellent scientists that share the same passion for research!!

Update of our protein outlier caller PROTRIDER. We now handle missing values, a widespread issue for mass spec where missing values are not a random -- and this improves outlier detection on non-missing data! Thumbs up to Daniela and George for the great work. doi.org/10.1101/2025...

This year, the lab has a great representation at the #eshg2025: 3 talks, 2 posters, 1 spin-off stand ! 1/n

What a fun and amazing experience to be this year at the other side of the stage @pintofscience.de! 🙈 Thank you for organizing and everyone for participating. I think it was the most exciting and also toughest Q&A session ever! 😊 @mpibiochem.bsky.social @gagneurlab.bsky.social

Take you agendas for our next RNA club! 📅4th June 2025 15h 📍@www.helmholtz-munich.de We will hear great talks from Patrick Schinke (@marsico-lab.bsky.social), Niklas Petzold (@sattler-lab.bsky.social), and Christoph Mueller-Hermes (Dueck's lab @tum.de). See you there!

Amazing conference on the application of AI in RNA biology! With great science and and better scientists. Thrilling share and discuss such exciting topics and to be part of this emerging field! @gagneurlab.bsky.social @mpibiochem.bsky.social

I am very happy to participate in this year's @pintofscience.de!! I will be giving a talk on AI and biology May 20th at the Keg bar. Don't miss this and other events, tickets are out! @gagneurlab.bsky.social @mpibiochem.bsky.social @tum.de

Join us for our next Kipoi Seminar with Laura Martens, Gagneur lab, TUM @lauradmartens.bsky.social @gagneurlab.bsky.social @tum.de 🐕scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution 📅Wed May 7, 5:30pm CET 🧬https://kipoi.org/seminar/ 🦋kipoizoo.bsky

Ready for 4 days full of talks and posters on RNA and AI, in the beautiful Ascona! #rnaai

Sunsets from @mpibiochem.bsky.social 😍

On Wed., Pedro @pedrotomazdasilva.bsky.social talks about interpreting DNA Language models through nucleotide dependency analyses. Capturing functional interactions -maps like this one for an intron- and more: RNA structures, reg motifs,... preprint: www.biorxiv.org/content/10.1...

Join us in our next #MunichRNA19F! 📍 @mpibiochem.bsky.social 📅 19/02/2025 We will hear amazing talks from Shuyao Sha (@kusterlab.bsky.social), @lauradmartens.bsky.social (@gagneurlab.bsky.social), @michaelkugler.bsky.social (@hopfnerlab.bsky.social), Marc Schmitt-Supprian. Don't miss it! 🧬😀

🚨🚨🚨 If you're a bioinformatician who loves: 🧬 #SingleCell #LongReadSequencing & #AlternativeSplicing 🚀 Collaborating and travelling Apply to work with us at the spectacular BIMSB (@mdc-berlin.bsky.social) in Berlin + @upf.edu[email protected] in Barcelona. Qs: www.transdevolab.com Please RT! 🙏

Hey reg genomics folks, here is our little x-mas present: Flashzoi. Borzoi. Just as good. 3x faster. Thumbs up to @johahi.bsky.social for the great initiative, conception & implementation. Big thanks to Johannes Linder, David Kelley and colleagues to have created Borzoi and shared it freely.

Thank you @upf.edu @crg.eu for making my PhD journey so amazing! I am honored to have received the Extraordinary Award. And a special thanks to my PhD supervisors @martinschaefer.bsky.social and Luis Serrano. Moltes gràcies!

Very happy to share our modeling of mRNA translation at the @SCB_iec Bioinformatics and Genomics! @gagneurlab & Nedialkova lab @MPI_Biochem https://t.co/ie5HnWaBHQ

Tomorrow! 👇 https://t.co/HQ4G0Vx6Al

Beautiful sunsets from @MPI_Biochem 😍 https://t.co/PnjHhSmuBE

Ready for some days of exciting science @EESRNA! Looking forward to share our latest results from @MPI_Biochem @gagneurlab !! 😊 https://t.co/I9ORug4lK8

Don't miss the chance! Great lab and supervisor!⬇️ https://t.co/NhAXFDmyHK

Tomorrow! Happy to take part in this! 👇 https://t.co/hx8wmCnAEz

Looking forward to tonight! Happy to share my science in it!! 😊😍 https://t.co/N8bVSv0XrF

An extremely interesting work to take part in, and a great team effort! Exited to see how much DNA LMs can help understanding biology!! https://t.co/Jwi6VbnSDb

I am so happy to receive this award!! Thank you so much @UPFBarcelona It is a great honour to share it with great colleagues from @CRGenomica 😍 And a special thanks to my great supervisors and mentors @lab_serrano @MartinHSchaefer for the exciting journey together! https://t.co/R7zTEJns9P

Thank you so much for this amazing meeting! It was so exciting to hear so many great talks on AI in genomics, and to share our science @gagneurlab! 😊😍 https://t.co/VcoUpjxAtT

☺️😀 https://t.co/xVrud02xZd

Enhorabona papa!! 😍 Quina il·lusió que em fa poder-te acompanyar en un dia com aquest! Una passió compartida pel @corpusdesitges , que des de ben petits ens has transmès i contagiat! 😊 https://t.co/0c8ODDM16J

One day into the #EMBOLabLead course, and already so many useful insights, reflective thoughts, and shared experiences. And much more to come in the following days! Thanks @EMBOFellows @LeadSculpt @LifeSciLearn https://t.co/RUnfgAUoBg

Sunset @MPI_Biochem 😍 https://t.co/zaINBLc1Sp

1 year already... 🙈 https://t.co/U5PtCJPk4G

Looking forward to this!! https://t.co/D7iu5hqfIB

Congrats!! Exciting project and challenges ahead!! 😊 https://t.co/BobZcDceCA

Just presented our work on codon-anticodon modelling at #EMBLProtein conference! Thanks to @lab_serrano @Hannah_Benisty @MartinHSchaefer and Nedialkova lab @MPI_Biochem Please reach out for any further discussion! https://t.co/C2kiZgTMIo

Looking forward to the great talks and posters in this #EMBLProtein conference!! I'll be presenting my latest work from @lab_serrano & @MPI_Biochem during Session 3 on Friday! https://t.co/kXbomhL3R6

Great talks and science today at @pintofscienceDE !! And especially a much needed debate on the ethics of A.I.! 👨‍💻🍻😍 #pint23DE https://t.co/VAuHiGAD8m

Starting my postdoc at Nedialkova group @MPI_Biochem . Looking forward to exciting projects ahead, together with @gagneurlab !! Thanks to @EMBOFellows for supporting it 😊☀️ https://t.co/hPpDV2uXF6

A must-read article mechanistically linking cellular energy to tissue-specific codon optimality! Amazing work @gagneurlab https://t.co/pSrZJFCYJB

After 4 years 6 months 14 days, today is my last day in this amazing place. I don't have words to describe how much I will miss the people and memories behind the walls. Thanks @lab_serrano @MartinHSchaefer for being a second family to me and incredible mentors and friends 🥰🥰 https://t.co/ug60HDVuuS

Are A/T-ending codons more conserved than G/C-ending codons across mammals?? Check our newest work!! ⬇️ "Genes enriched in A/T-ending codons are co-regulated and conserved across mammals" https://t.co/cYato4snOb

Thanks a lot for reading! This work has been possible thanks to @MartinHSchaefer @hannah_benisty @lab_serrano @leandroradusky @CRGenomica @FundacionAreces @IEOufficiale @AIRC_it 11/11

We then used CUSTOM to design fluorescent variants of eGFP and mCherry optimized to either lung or kidney, and indeed we validated that their expression changed in kidney cells (HEK293T) versus lung cells (A549). 9/11 https://t.co/EheWplq0l4

We then use this data to develop CUSTOM (Codon Usage to Specific Tissues OptiMizer), a tool that allows us to design genes targeted to specific tissues. Check and try it out here! https://t.co/KkSkNL6020 8/11

In our study, we have analyzed proteomics and mRNA-seq datasets across 36 tissues to detect which genes are better or worse translated in one tissue versus others. And therefore we identified which codons are more common in one tissue versus others. 6/11 https://t.co/M5WJQxXNqQ