Daniel Franco-Barranco
@danifranco93.bsky.social
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Postdoc in Albert Cardona's lab at MRC LMB
BiaPy in Galaxy. Check it out! 🤓
galaxyproject.org/news/2025-10...
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New Galaxy Tool: BiaPy – Deep Learning for Bioimage Analysis in Galaxy
Perform advanced deep-learning-based workflows for image segmentation, classification, and reconstruction
https://galaxyproject.org/news/2025-10-21-bia-py-available-in-galaxy/
19 days ago
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BiaPy is now In Galaxy!! Don't miss the chance of using it to build your workflows in the cloud ;D
add a skeleton here at some point
23 days ago
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Looking for a PhD in AI & bioimage analysis? 🤠This is basically the ‘boss level’ of opportunities: cutting-edge research + a mentor you’d actually want to have coffee with. Don’t miss it 👇
add a skeleton here at some point
about 1 month ago
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Daniel Franco-Barranco
BiaPy
4 months ago
In the meantime, we have more than 46 pretrained models from ⛴️ BiaPy available now in the 🦒 Bioimage Model Zoo 🫶
@ai4life.bsky.social
🔗 Have a look at:
bioimage.io#/models
As usual, they are accesible from BiaPy's GUI 🖥️, Colab notebooks 📔 and our API 🤓
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BioImage.IO - Model Zoo
BioImage Model Zoo - A community-driven, open resource for sharing standardized AI models for bioimage analysis
https://bioimage.io/#/models
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Daniel Franco-Barranco
BiaPy
4 months ago
⛴️ BiaPy just reached version 3.6.1 💫 (latest release)!
github.com/BiaPyX/BiaPy...
➡️ v3.6.1 came right after (the more dense) v3.6.0 to fix some small bugs 🐞 Let me tell you a bit about what's new 👇
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Release Version 3.6.1 · BiaPyX/BiaPy
Minor: Disable painting matching instances by default as it takes a lot of time, i.e. TEST.MATCHING_STATS_THS_COLORED_IMG to [] (#135) Refine DA notebook Update notebooks to install BiaPy v3.6.0 ...
https://github.com/BiaPyX/BiaPy/releases/tag/v3.6.1
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Daniel Franco-Barranco
Arrate Munoz-Barrutia
6 months ago
Prou (ex-)supervisor & (always) mentor of
@ai4life.bsky.social
@egomezm.bsky.social
Teresa Zulueta Coarasa;
@danifranco93.bsky.social
@cfusterbarcelo.bsky.social
Carlos Garcia Lopez de Haro @uc3m @cienciauc3m
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Daniel Franco-Barranco
AI4Life
6 months ago
💬 After lunch, we’re back with the AI4Life Community: tool builders, research infrastructures, and industry voices. Community tools like
@biapyx.bsky.social
and SpotMAX show how AI4Life partners are building bridges between developers and end users.
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Daniel Franco-Barranco
Arrate Munoz-Barrutia
6 months ago
@biapyx.bsky.social
& Bioimage Model Zoo making people Happy! 😅 at
#neubiaspasteur2025
@jwpylvanainen.bsky.social
@ai4life.bsky.social
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reposted by
Daniel Franco-Barranco
Arrate Munoz-Barrutia
6 months ago
No words needed!
#neubiaspasteur2025
@iarganda.bsky.social
@danifranco93.bsky.social
@biapyx.bsky.social
Thank you
@jwpylvanainen.bsky.social
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Don’t miss the opportunity to work with a scientist like
@iarganda.bsky.social
!! Kind, honest and brilliant! Plus, the position is located in the beautiful Donostia / San Sebastian. What more do you need? 👇👇
add a skeleton here at some point
6 months ago
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Daniel Franco-Barranco
BiaPy
7 months ago
Kudos to you, my captain! 🦸♂️
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Daniel Franco-Barranco
Ignacio Arganda-Carreras
7 months ago
So happy to see this finally out! 🤗 Amazing job from an awesome team:
@ivanhcenalmor.bsky.social
,
@aaitorg.bsky.social
,
@caporalclement.bsky.social
,
@lmescu.bsky.social
,
@arratemunoz.bsky.social
munoz.bsky.social
, & more! Specially proud of
@danifranco93.bsky.social
that dedicated his PhD to this 🥰
add a skeleton here at some point
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Finally BiaPy is out in Nature Methods! 🥳🥳🥳 A major milestone in my research! I'm incredibly proud of the progress made. Huge thanks to my PhD supervisors,
@iarganda.bsky.social
and
@arratemunoz.bsky.social
, for their invaluable guidance and support throughout this journey. Check out the thread🧵👇
add a skeleton here at some point
7 months ago
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reposted by
Daniel Franco-Barranco
BiaPy
8 months ago
🆕 Did you experience troubles ⚠️ while installing BiaPy in our Google Colab notebooks? We did too! This is due to some updates in the default libraries of Colab. As a temporary solution, we have now included a new cell in the notebooks to reinstall the conflicting libraries 👇
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reposted by
Daniel Franco-Barranco
BiaPy
10 months ago
🆕 Now that the bugs have been fixed 🙃, we have a new video 📹 tutorial on how to import pretrained models from the BioImage Model Zoo 🦒 into your
#BiaPy
workflow using our friendly GUI 🖥️, by
@iarganda.bsky.social
:
youtu.be/Zq50Ew1s8ag
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BiaPy GUI: Import models from the BioImage Model Zoo
YouTube video by BiaPy
https://youtu.be/Zq50Ew1s8ag
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Daniel Franco-Barranco
Christoph Fischer
10 months ago
It took me more than 4 years to capture a scene I could only dream of. A magnificent Condor soars above the peaks of Argentina's Mount Fitz Roy, as they are spot lit in beautiful morning light. 🪶
#bluesky
#photography
#landscape
#birds
#nature
#landscapephotography
#naturephotography
#travel
#scape
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Don't miss the chance to check what's new in BiaPy's GUI! 😍
add a skeleton here at some point
10 months ago
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Daniel Franco-Barranco
Leah Caplan
11 months ago
When you’re imaging and your sample takes a Pikachu! Having fun playing around with our new
#Nikon
NSPARC for
#FluorescenceFriday
#microscopy
#myosin
#epithelial
#cellbiology
#meme
@tyskalabactual.bsky.social
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Daniel Franco-Barranco
Dani cRabaiotti 🦀
almost 2 years ago
Welcome to the Science feed! Please read our FAQs for instructions for how to be added as a contributor:
bossett.io/science-feed/
Mod introductory posts linked below⬇️ Use the test tube emoji on posts you want to appear in the feed🧪 Please like the feed and make sure you follow our feed rules:
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reposted by
Daniel Franco-Barranco
Zebrafish Rock!
12 months ago
Check out
#ZebrafishZunday
every Sunday for fintastic fish
#sciart
! 🧪
add a skeleton here at some point
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Is there any list I can join to see posts related to connectomics? 🧪🧪
12 months ago
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reposted by
Daniel Franco-Barranco
BiaPy
12 months ago
Did you like what you heard about BiaPy at
#SPAOM2024
? 🔬 Are you interested in giving its GUI a try? 🖥️🧙 Search no more! Here you have our walkthrough video tutorial on BiaPy's GUI by
@danifranco93.bsky.social
🤗 Let us know your thoughts, all feedback is welcome! 🤩
youtu.be/vY7aBh5FUNk?...
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BiaPy graphical user interface walkthrough
YouTube video by BiaPy
https://youtu.be/vY7aBh5FUNk?si=GSjXs4w699t7OKNw
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With how easily I get cold, I’ve had the luck to come to Cambridge during the coldest weeks of the year, according to the locals! Lucky me! 🧊🧊❄️❄️
12 months ago
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Don't miss the chance of knowing the last updates of BiaPy in
#SPAOM2024
!!! 🔬🤓
add a skeleton here at some point
12 months ago
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reposted by
Daniel Franco-Barranco
Andrew Hires
12 months ago
This paper is incredible. EM level connectomics on a light microscope.
www.biorxiv.org/content/10.1...
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reposted by
Daniel Franco-Barranco
Jesper Dr.amsch
12 months ago
Discover the key to unlocking impactful scientific contributions in the world of machine learning! 🤖📈 This tutorial aims to increase the quality of scientific contributions using reproducible methods, appropriate validation techniques, and better code quality. 🧪
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Discover the key to unlocking impactful scientific contributions in the world of machine learning! 🤖📈
Making models and data available increases the visibility of work and enables easier collaboration on future work.
http://amplt.de/OrangeHotOther
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Daniel Franco-Barranco
Guille Martín
12 months ago
Los tuits con bulos sobre salud tienen mucho más alcance que los científicos porque sus seguidores son mucho más activos y fanáticos. Así que si veis información interesante y de calidad: compartid y dad like. Es otra forma de luchar contra ellos.
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Today was my first day in Cardona's lab at MRC LMB. It was a pleasure to meet my new lab colleagues and I'm excited for the upcoming projects to develop. Stay tunned!
12 months ago
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Daniel Franco-Barranco
Ignacio Arganda-Carreras
12 months ago
🆕 We have updated our preprint in
@biorxivpreprint.bsky.social
📰 It explains better the current state of
#BiaPy
⛴️ while describing as well its limitations 🤗 Hope you like it! "BiaPy: Accessible deep learning on bioimages"
www.biorxiv.org/content/10.1...
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BiaPy: Accessible deep learning on bioimages
BiaPy is an open-source library and application that streamlines the use of common deep learning approaches for bioimage analysis. Designed to simplify technical complexities, it offers an intuitive i...
https://www.biorxiv.org/content/10.1101/2024.02.03.576026v2
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