Tom McLean
@tommclean.bsky.social
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Structural Biochemist. Research Officer at WEHI. Future DECRA Fellow at Monash.
reposted by
Tom McLean
Leah McPhillips
3 days ago
Excited to share this is now published in
@narjournal.bsky.social
🎉 see the preprint thread below for a summary of our findings on plasmids with multiple partition systems using the Streptomyces plasmid SCP1 as a model!
academic.oup.com/nar/article/...
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reposted by
Tom McLean
Tung Le
14 days ago
Here,
@tommclean.bsky.social
shows that another RK2 regulator, TrbA, likely also use this “clamp sliding-locking” mechanism to regulate gene expression. Interesting how a single sliding clamp might integrate multiple partners to potentially build a complex regulatory network...
shorturl.at/YQJOI
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https://shorturl.at/YQJOI
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reposted by
Tom McLean
Tung Le
14 days ago
KorB functions as a CTP-dependent DNA-sliding clamp traveling a long genomic distance. Sliding KorB is captured and locked in place by a partner protein, KorA, forming a stable A-B complex at target promoters to repress transcription.
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reposted by
Tom McLean
Tung Le
14 days ago
Sometimes ago Tom
@tommclean.bsky.social
uncovered a mechanism of bacterial gene regulation based on a clamp sliding and locking in a multi-drug resistance plasmid, RK2.
www.nature.com/articles/s41...
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KorB switching from DNA-sliding clamp to repressor mediates long-range gene silencing in a multi-drug resistance plasmid - Nature Microbiology
Structural and single-molecule analyses show the CTPase, KorB, is a sliding DNA clamp that interacts with a clamp-locking protein KorA to inhibit gene expression over distances of more than 1 kb in th...
https://www.nature.com/articles/s41564-024-01915-3
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reposted by
Tom McLean
Jovana Kaljević ⬜️
about 1 month ago
My second postdoc paper in
@tunglejic.bsky.social
lab and two of my favorite things in the lab combined: ParB and killing bacteria. Thanks to everyone who helped make this project possible!
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reposted by
Tom McLean
Tung Le
about 1 month ago
@biorxiv-microbiol.bsky.social
Who knew ParB-CTPase fold can kill!!! A protein fold best known for segregating chromosomes…can be transformed into a potent antibacterial toxin in some plant and animal pathogens.
www.biorxiv.org/content/10.6...
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Repurposing a chromosome segregation ParB-CTPase fold into an ATPase toxin for contact-dependent growth inhibition in plant and animal pathogens
Bacterial competition drives the evolution of antibacterial mechanisms, yet how new activities arise remains poorly understood. A major route to innovation is the reuse of pre-existing genetic systems, whereby conserved protein modules are repurposed in new biological contexts to generate new capabilities. Here, we show that the ParB-CTPase fold, a conserved nucleotide-binding module best known for its role in chromosome segregation, can be functionally repurposed as an antibacterial toxin. We identify ToxB, a ParB-like domain embedded within the polymorphic toxin region of contact-dependent inhibition systems and show that it functions as a potent antibacterial effector. Structural and biochemical analyses reveal that ToxB retains the core architecture of the ParB-CTPase fold but lacks DNA-binding capability and preferentially binds ATP. This shift in nucleotide specificity underpins a distinct mode of action, in which ATP binding and hydrolysis trigger rapid nucleoid compaction, chromosome segregation defects, oxidative stress, cell chaining, and ultimately cell lysis. ToxB also exhibits toxic activity in plant cells, suggesting that it targets conserved cellular processes. Together, these findings provide direct experimental evidence that the ParB-NTPase fold is biologically versatile and can be repurposed for biological roles fundamentally distinct from its ancestral function in DNA segregation. ### Competing Interest Statement The authors have declared no competing interest. Wellcome Trust, https://ror.org/029chgv08, 221776/Z/2/Z, 227755/Z/23/Z Biotechnology and Biological Sciences Research Council, https://ror.org/00cwqg982, BB/X01097X/1 Diamond Light Source, MX32728
https://www.biorxiv.org/content/10.64898/2026.05.05.722872v1
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reposted by
Tom McLean
WEHI (The Walter and Eliza Hall Institute of Medical Research)
3 months ago
Happy International Women’s Day! We’re celebrating the talented women across WEHI — scientists, students and professional staff — whose passion and expertise help power discoveries that change lives. 🧪 📸 L-R: Jill Chmielewski, Research Officer and Frankie Lyons, PhD student
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Reposting! We’re going to do some amazing science and have a lot of fun doing it!
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3 months ago
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Come do a PhD with me and
@trevor-lithgow.bsky.social
at
@monashuniversity.bsky.social
! We’re at the leading edge of pathogen biology using cutting edge Cryo-EM and AI-driven genetic screens to uncover the mysteries of outer membrane biology. Reach out to me for a chat!
macsys.org/phd-scholars...
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PhD Scholarship at Monash University - MACSYS
Do cutting-edge research at the intersection of cryo‑EM, genome-wide profiling, and AI-driven modelling. Work with world‑class cryo-EM/cryo-ET imaging and AI tools to discover how the dangerous bacter...
https://macsys.org/phd-scholarship-monash-2026/
4 months ago
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reposted by
Tom McLean
Victorian Infection and Immunity Network
4 months ago
This year Hartland Oration was delivered by Thomas McLean from
@wehi-research.bsky.social
, a great talk on how does the structure of DNA sliding clamp enable gene silencing on a multidrug-resistance plasmid. 👏
#lorneiandi
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reposted by
Tom McLean
Matt Hutchings
4 months ago
First results chapter from Kelly-Rose Tulley’s PhD is published. It was a great team effort to get this finished. This work supports previous results on S. coelicolor OrrA and suggests its function is highly conserved.
#microsky
#streptomyces
1/2
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Too excited by the science to include the link to the paper! Here it is:
journals.asm.org/doi/10.1128/...
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6 months ago
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Delighted to see the main work from my PhD finally published in
@mbio.bsky.social
! It all started with the observation that deleting the cutRS two-component system in S. venezuelae caused this amazing explorer phenotype in the presence of glucose. But what was going on?! (1/n)
6 months ago
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reposted by
Tom McLean
Leah McPhillips
6 months ago
📄 Delighted to share that the preprint of my main PhD work is out now! 👏 A huge thank you to everyone involved,
@tommclean.bsky.social
, Govind Chandra, Ngat Tran (both not on BlueSky) and especially my PhD supervisor
@tunglejic.bsky.social
👏 🧵 below!
www.biorxiv.org/content/10.6...
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Stable inheritance of the Streptomyces linear plasmid SCP1 by dual ParABS partition systems
Low-copy-number plasmids often rely on dedicated maintenance mechanisms, such as partitioning systems, to ensure stable inheritance across generations. These partition systems actively segregate siste...
https://www.biorxiv.org/content/10.64898/2025.12.10.693275v1
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Check out this work by the amazing
@leahmcphillips.bsky.social
from during her PhD!!
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6 months ago
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reposted by
Tom McLean
Jovana Kaljević ⬜️
6 months ago
Our preprint is now published in PNAS! This came together thanks to a great collaboration with Antoine Hocher and a strong team effort from the Le Lab. Thank you to the reviewers and to everyone who helped improve it. I hope ParB aficionados will enjoy it.
www.pnas.org/doi/10.1073/...
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Versatile NTP recognition and domain fusions expand the functional repertoire of the ParB-CTPase fold beyond chromosome segregation | PNAS
Nucleotide triphosphate (NTP)-dependent molecular switches regulate essential cellular processes by cycling between active and inactive states thro...
https://www.pnas.org/doi/10.1073/pnas.2527592122
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reposted by
Tom McLean
Ben Long
7 months ago
#straya
Bin Chicken: targeted metagenomic coassembly for the efficient recovery of novel genomes.
www.nature.com/articles/s41...
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Bin Chicken: targeted metagenomic coassembly for the efficient recovery of novel genomes - Nature Methods
By developing a strategy of metagenomic coassembly and prioritizing divergent marker gene sequences, Bin Chicken efficiently recovers more than 77,000 microbial genomes with high novel diversity, ther...
https://www.nature.com/articles/s41592-025-02901-1
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reposted by
Tom McLean
Harmit Singh Malik
7 months ago
When people celebrate the individual genius of folks in science, they should also mourn the collective loss of genius of folks who were actively discouraged or disadvantaged from a career in science because of the same person(s)
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reposted by
Tom McLean
Tung Le
8 months ago
new preprint from our group & Antoine Hocher:
www.biorxiv.org/content/10.1...
A fantastic collaboration with Antoine, with Jovana Kaljevic' initiated the collaboration and drives the project.
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Versatile NTP recognition and domain fusions expand the functional repertoire of the ParB-CTPase fold beyond chromosome segregation
Nucleotide triphosphate (NTP)-dependent molecular switches regulate essential cellular processes by cycling between active and inactive states through nucleotide binding and hydrolysis. These mechanis...
https://www.biorxiv.org/content/10.1101/2025.10.10.680097v1
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reposted by
Tom McLean
bioRxiv Microbiology
8 months ago
Versatile NTP recognition and domain fusions expand the functional repertoire of the ParB-CTPase fold beyond chromosome segregation
https://www.biorxiv.org/content/10.1101/2025.10.10.680097v1
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reposted by
Tom McLean
Matt Hutchings
10 months ago
Ever wondered why some antibiotics are made by Streptomyces on agar plates but not in liquid cultures? Read this work on redox control of antibiotic biosynthesis. Led by
katienoble241.bsky.social
and Rebecca Devine, and in collaboration with
@barriewilks.bsky.social
journals.asm.org/doi/10.1128/...
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https://journals.asm.org/doi/10.1128/mbio.01369-25
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After 8 wonderful years in Norwich, 3 at UEA and 5 at the JIC it’s time to say goodbye. I will miss each and every amazing person I’ve had the pleasure of working with or meeting here. It truly is a fine city.
11 months ago
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Nice to see our recent work on the fascinating KorAB system be featured on the back of
@johninnescentre.bsky.social
Advances! Read the full paper here:
www.nature.com/articles/s41...
11 months ago
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Check out our lab's new work on a CTP-independent ParABS system. Some fantastic work from Kirill et al!
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11 months ago
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Have a read of this simply phenomenal work on the weird and wonderful GTAs from star Fellow (and office mate) Emma Banks et al
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about 1 year ago
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reposted by
Tom McLean
Trevor Lithgow
about 1 year ago
"That telomere phages are so prevalent means that they are a selective force, one that we know little about. We now want to understand how the telomere-toxin is secreted and also understand how this ‘telocin’ wheedles its way into unsuspecting bacterial neighbors”
www.science.org/doi/10.1126/...
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Telomere bacteriophages are widespread and equip their bacterial hosts with potent interbacterial weapons
Klebsiella host strains infected with telomere phages can grow to be the dominant lineage in mixed populations.
https://www.science.org/doi/10.1126/sciadv.adt1627
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The paper is now live:
academic.oup.com/mbe/article/...
Absolutely delighted to play a role in this fascinating story!
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about 1 year ago
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reposted by
Tom McLean
Chris Thomas
about 1 year ago
The second great paper concerns the discovery in Eva Top's group that an enigmatic protein encoded by IncP-1beta plasmids modulates the IncP-1 circuitry in E. coli to make the plasmid a burden in this host: Elg et al recently accepted in Molecular Biology and Evolution
doi.org/10.1093/molb...
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pendingpublications
Pending Publication
https://doi.org/10.1093/molbev/msaf062
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reposted by
Tom McLean
Martin Thanbichler
about 1 year ago
#Postdoc
position - at the University of Marburg (Germany), funded within our ERC Advanced Grant "C-SWITCH" Focus: CTP-dependent molecular switches as a new principle of cellular regulation in bacteria (including bacteriophages) Apply by 04 May:
stellenangebote.uni-marburg.de/jobposting/2...
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Almost 8 years after starting this project finally happy to share the main research from my PhD! Couldn't have done it without the amazing help from
@ainsley-beaton.bsky.social
! We untangled a fascinating new redox sensor with the most extraordinary growth phenotype (I'm biased) in Streptomyces!
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about 1 year ago
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reposted by
Tom McLean
Ainsley Beaton
about 1 year ago
Further insight into how CutRS functions in Streptomyces and some thoughts on how its redox state detection via conserved dual cysteine residues in the extra cellular domain of a sensor kinase may be present in almost all bacteria
@tommclean.bsky.social
@matthutchings.bsky.social
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reposted by
Tom McLean
Matt Hutchings
about 1 year ago
Very happy to share this work led by
@tommclean.bsky.social
and
@ainsley-beaton.bsky.social
. The conserved Streptomyces sensor kinase CutS senses disulphide bond formation outside the cell. If it fails CutS activates CutR which switches on production of foldase HtrA3
www.biorxiv.org/content/10.1...
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Extracellular redox sensors control the protein secretion stress response in Streptomyces
Translocating unfolded polypeptides across membranes is essential in all domains of life and in bacteria requires the conserved Sec machinery and ATP. Bacterial Sec substrates fold outside the cell an...
https://www.biorxiv.org/content/10.1101/2025.03.20.644377v1
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It's done. I've deactivated my twitter account, good riddance.
about 1 year ago
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reposted by
Tom McLean
Matt Hutchings
over 1 year ago
Redox control of antibiotic biosynthesis in Streptomyces. Remarkable work led by
@katienoble241.bsky.social
and Rebecca Devine demonstrates why antibiotic biosynthesis is often switched on in solid cultures and off in liquid.
www.biorxiv.org/content/10.1...
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Redox control of antibiotic biosynthesis
Streptomyces bacteria make diverse specialised metabolites that form the basis of ~55% of clinically used antibiotics. Despite this, only 3% of their encoded specialised metabolites have been matched ...
https://www.biorxiv.org/content/10.1101/2025.03.04.641395v1
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reposted by
Tom McLean
Tung Le
over 1 year ago
Nice blog from the Lister Institute on our recent work on KorAB and long-range gene silencing on multi-drug resistance plasmid!!!
@tommclean.bsky.social
@johninnescentre.bsky.social
lister-institute.org.uk/biology-is-f...
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‘Biology is full of surprises’: How Tung Le’s team unlocked the secrets of RK2 plasmid proteins – Lister Institute
https://lister-institute.org.uk/biology-is-full-of-surprises-how-tung-les-team-unlocked-the-secrets-of-rk2-plasmid-proteins/
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reposted by
Tom McLean
Tung Le
over 1 year ago
Cool “Behind the paper” article on our recent KorB-KorA sliding clamp-locking clamp story. I remember Chris Thomas and Lewis Bingle (Birmingham) taught me about these proteins when I was an undergrad, and I kept remembering they said the mechanism was not clear!!!
www.nature.com/articles/s41...
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Sliding clamp protein enables long-range gene silencing in a bacterial plasmid - Nature Microbiology
Long-distance gene regulation is uncommon in bacteria, and its molecular mechanisms are unclear. Using a combination of structural, biochemical and single-molecule techniques, researchers revealed tha...
https://www.nature.com/articles/s41564-025-01924-w
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reposted by
Tom McLean
Nature Microbiology
over 1 year ago
OUT NOW: KorB is a DNA clamp which slides along DNA to mediate long-range gene silencing upon interaction with the clamp-locking KorA protein by Tung Le & co
@johninnescentre.bsky.social
www.nature.com/articles/s41...
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KorB switching from DNA-sliding clamp to repressor mediates long-range gene silencing in a multi-drug resistance plasmid - Nature Microbiology
Structural and single-molecule analyses show the CTPase, KorB, is a sliding DNA clamp that interacts with a clamp-locking protein KorA to inhibit gene expression over distances of more than 1 kb in th...
https://www.nature.com/articles/s41564-024-01915-3
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Super excited to share the peer-reviewed version of the KorAB paper. Amazing to work such talented collaborators and thanks to the reviewers for making the work even better!
www.nature.com/articles/s41...
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KorB switching from DNA-sliding clamp to repressor mediates long-range gene silencing in a multi-drug resistance plasmid - Nature Microbiology
Structural and single-molecule analyses show the CTPase, KorB, is a sliding DNA clamp that interacts with a clamp-locking protein KorA to inhibit gene expression over distances of more than 1 kb in th...
https://www.nature.com/articles/s41564-024-01915-3
over 1 year ago
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reposted by
Tom McLean
Timothée Poisot
over 2 years ago
New paper in PLOS Biol with
@graciellehigino.bsky.social
et al.: "Postdoctoral scientists are mentors, and it is time to recognize their work". We argue that ensuring that post-docs receive proper credit for ALL their labour would benefit all academia.
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Postdoctoral scientists are mentors, and it is time to recognize their work
Post-doctoral scientists are effective mentors for graduate students. This Perspective discusses how failures to properly credit them for this role has negative consequence for everyone and suggests p...
https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3002349
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Finally made the pilgrimage to Micropia! Dragged a whole bunch of friends to learn about microbes with me!
over 2 years ago
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reposted by
Tom McLean
Dr Katherine Duncan
over 2 years ago
Our review - Antibiotics from rare actinomycetes, beyond the genus Streptomyces - is now online Thanks to coauthors
@jonathanparra.bsky.social
@ainsleybeaton1 @ryanfseipke @barriewilksjic
@matthutchings.bsky.social
and editors Toni Gabaldón & Luiz Carvalho for the invitation
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Antibiotics from rare actinomycetes, beyond the genus Streptomyces
Throughout the golden age of antibiotic discovery, Streptomyces have been unsurpassed for their ability to produce bioactive metabolites. Yet, this su…
https://www.sciencedirect.com/science/article/pii/S1369527423001224
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reposted by
Tom McLean
Géraldine Laloux
over 2 years ago
First post in this place 💙our last story on the #ParABS system and the unique behaviour of #ParB during the #Bdellovibrio cell cycle is now alive at #PLOSGenetics! We love the revised version (thanks to the 3 super reviewers & great editorial advice). Read it here
dx.plos.org/10.1371/jour...
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Cell cycle-dependent organization of a bacterial centromere through multi-layered regulation of the ...
Author summary The precise distribution of genetic material to the progeny is essential for all living organisms, and the ParABS system is critical for this process in most bacteria. Our study provide...
https://dx.plos.org/10.1371/journal.pgen.1010951
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Finally some good news, UK rejoins Horizon Europe!
www.bbc.co.uk/news/uk-6673...
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UK rejoins EU science research scheme Horizon
UK-based scientists and institutions will have access to the £85bn fund from today.
https://www.bbc.co.uk/news/uk-66737714
almost 3 years ago
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