Carmen?
@probablycarmen.bsky.social
π€ 27
π₯ 39
π 18
Doctorate Candidate at the Bottanelli lab?
#FUBiochemistry
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reposted by
Carmen?
preLights
25 days ago
preLighters go live! A light and lively face-to-face conversation between the preLighters
@fadelvalle.bsky.social
& Vibha Singh and the researchers
probablycarmen.bsky.social
& Eva Mejia-Ramirez will be hosted at the
@focalplane.bsky.social
webinar. 4 Sept, 14.00-15.00 BST Tune in!
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preLighters go live! This Thursday - preLights
β How do membrane actin protrusions initiate to T-cells signalling? β What does RhoA have to do with nuclear envelope tensions in stem cells? β Does advanced microscopy help study mechano-signalling β...
https://prelights.biologists.com/news/prelighters-go-live-this-thursday/
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Carmen?
FocalPlane
30 days ago
One week to go! Register now for our
#FocalPlaneFeatures
webinar with
@prelights.bsky.social
.
us02web.zoom.us/webinar/regi...
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Carmen?
FocalPlane
about 1 month ago
#FocalPlaneFeatures
meets
@prelights.bsky.social
@fadelvalle.bsky.social
& Vibha Singh have picked 2 fantastic
#cellbio
preprints & will be presenting their preLights alongside research talks from
@probablycarmen.bsky.social
& Eva Mejia-Ramirez. Register:
focalplane.biologists.com/2025/08/20/f...
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Fran Bottanelli
about 1 month ago
Great to see our preprint from
@probablycarmen.bsky.social
and co highlighted in the
@focalplane.bsky.social
list of studies using
#microscopy
to answer bio questions questions!
www.biorxiv.org/content/10.1...
add a skeleton here at some point
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Carmen?
FocalPlane
about 2 months ago
π’Our preprint list is up on FocalPlane π¬ This week we featured preprints that use
#microscopy
to answer questions in
#biology
. Check them out and let us know about any recent preprints that we should add to the list!
focalplane.biologists.com/2025/08/12/m...
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Microscopy preprints - applications in biology - FocalPlane
Microscopy preprints - applications in biology - News
https://focalplane.biologists.com/2025/08/12/microscopy-preprints-applications-in-biology-17/
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Carmen?
STAR Protocols
about 2 months ago
Protocol for fast antibiotic resistance-based gene editing of mammalian cells with CRISPR-Cas9
#protocol
#starprotocols
#cellpress
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Protocol for fast antibiotic resistance-based gene editing of mammalian cells with CRISPR-Cas9
Protein tagging with CRISPR-Cas9 enables the investigation of protein function in its native environment but is limited by low homology-directed repair (HDR) efficiency. Here, we present a protocol for fast antibiotic resistance-based gene editing with CRISPR-Cas9 (FAB-CRISPR), which streamlines N/C-terminal tagging using an antibiotic resistance cassette for rapid selection and enrichment of gene-edited cells. We describe in detail guide RNA and HDR donor plasmid cloning, transfection of editin...
http://dlvr.it/TMMYwD
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Petia Adarska
about 2 months ago
Thrilled to share our step-by-step protocol for endogenous protein tagging with CRISPR/Cas9, featuring an antibiotic resistance cassette to boost knock-in efficiencies π§«π§¬ Now out in STAR protocols:
www.sciencedirect.com/science/arti...
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Protocol for fast antibiotic resistance-based gene editing of mammalian cells with CRISPR-Cas9
Protein tagging with CRISPR-Cas9 enables the investigation of protein function in its native environment but is limited by low homology-directed repaiβ¦
https://www.sciencedirect.com/science/article/pii/S2666166725003557?via%3Dihub
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Check out our new preprint on the role of T cell actin-rich protrusion in CAR signalling initiation. Spoiler alert: Protrusions do it better
www.biorxiv.org/content/10.1...
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T cell protrusions enable fast, localised initiation of CAR signalling
Actin-rich protrusions densely cover the surface of T cells and are well characterised for their role in cell migration. However, recent studies have uncovered their role in antigen surveillance and immune signalling initiation. To investigate how membrane protrusions initiate and contribute to signalling, from the first cell-cell contact to immunological synapse formation, we performed dynamic imaging experiments of endogenously tagged signalling proteins in T cells. To quantitatively capture the early dynamics of cell-cell interactions, we employed HER2βCAR-expressing T cells targeting HER2βΊ breast cancer cells. By harnessing live-cell imaging and super-resolution stimulated emission depletion (STED) microscopy we were able to capture topological membrane changes and their correlation with mesoscale protein rearrangements over time. Our findings indicate that, prior to activation, key molecular players in T cell activation, including the kinase Lck, the phosphatase CD45 and the adaptor LAT, as well as the exogenously expressed CAR, lack any enrichment in actin-rich protrusions. However, upon initial contact of the T cell with the target cell, a dynamic and fast rearrangement of the surface receptors, phosphatases, and kinases occurs within the protrusions, ensuring a rapid and effective initiation of the immune signalling cascade. The rapid clustering of the HER2-CAR occurs preferentially within protrusions rather than flat membrane regions and is accompanied by enhanced recruitment of the kinase ZAP-70 and LAT. While the localisation of the kinase Lck remained unchanged, protrusion-cell contacts trigger a pronounced exclusion of the phosphatase CD45, an effect observed both with and without the cytosolic signalling domain of the CAR. Overall, the signalling machinery rearranged more rapidly and efficiently at contacts mediated by protrusive structures compared to non-protrusive regions. Together, our data provide a quantitative framework illustrating how signalling proteins are dynamically reorganised to facilitate CAR-mediated activation within these specialised structures. ### Competing Interest Statement The authors have declared no competing interest.
https://www.biorxiv.org/content/10.1101/2025.07.08.662959v1
3 months ago
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Carmen?
Fran Bottanelli
7 months ago
Long in the making but our protocol for gene editing is online! FAB CRISPR is super easy and allows the generation of N and C terminal fusions with TurboID, SNAP, Halo and mStayGold. A single cloninf step to generate HDR templates!
arxiv.org/abs/2502.12675
1/n
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Fast Antibiotic resistance-Based gene editing of mammalian cells with CRISPR-Cas9 (FAB-CRISPR)
Protein tagging with CRISPR-Cas9 enables the investigation of protein function in its native environment but is limited by low homology-directed repair (HDR) efficiency causing low knock-in rates. We ...
http://arxiv.org/abs/2502.12675
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reposted by
Carmen?
Fran Bottanelli
10 months ago
T cells Thursday? Let's start it! We are a group of "accidental immunologists" diving into the mechanisms of membrane organization of signaling molecules in immune cells. Jurkat T cell expressing endogenously tagged ZAP70 (cyan) and a HER2 CAR (yellow), interacting with a SK-BR-2 breast cancer cell
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