Nicola Soranzo
@nsoranzo.bsky.social
📤 95
📥 117
📝 5
Galaxy developer at
@earlhaminst.bsky.social
. Views my own.
reposted by
Nicola Soranzo
Galaxy Project
15 days ago
Galaxy 25.1 is here! 🚀 New card-based history UI, Sample Sheets for complex workflows, enhanced Tool Discovery, Galaxy Charts with IGV.js browser, Recent Exports page, workflow editor search, redesigned User Preferences & more!
https://gxy.io/r/v25.1
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25.1 Galaxy Release (December 2025) — Galaxy Project 25.1.1.dev0 documentation
https://gxy.io/r/v25.1
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Nicola Soranzo
BioFAIR
3 months ago
🚀 The BioFAIR Fellowship launched today! Leaders in data & workflows, working together to advance FAIR practices for the life sciences. 👉 full details:
biofair.uk/updates/2025...
#FAIR
#OpenScience
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BioFAIR Fellowship Launches to Empower the Next Generation of FAIR Leaders - BioFAIR
We are delighted to announce the official launch of the BioFAIR Fellowship, starting on 1 October 2025. This new programme is designed to build a vibrant and skilled community of researchers and profe...
https://biofair.uk/updates/2025/biofair-fellowship-launches-to-empower-the-next-generation-of-fair-leaders/
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Nicola Soranzo
Galaxy Project
3 months ago
Nicola Soranzo presented 'Making Galaxy workflows sustainable and FAIR' on Day 2 of European Galaxy Days. Read more: https://www.earlham.ac.uk/research-project/elixir-uk #
#EGD2025
#
#galaxy_workflows
#
#sustainable
#
#galaxyproject
#
#workflows
#
#eosc
#
#fair
#
#open_science
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Nicola Soranzo
ELIXIR-UK
6 months ago
📢 ELIXIR-UK’s new Flexible Bursary scheme is open! 🧪 Up to £5K for: • Travel to ELIXIR events • Running local training or meetups • Technical visits & collaboration 🗓️ Deadline: 15 Aug, 5PM BST 🔗
elixiruknode.org/opportunity/...
#ELIXIRUK
#OpenScience
#FAIRdata
#LifeScience
#Funding
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2025 ELIXIR-UK flexible bursary | ELIXIR-UK
The Flexible Bursaries Scheme provides financial support to ELIXIR-UK members for community events and activities. These bursaries aim to facilitate partici ...
https://elixiruknode.org/opportunity/2025-elixir-uk-flexible-bursary/
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Nicola Soranzo
Galaxy Project
7 months ago
🦫 We are excited to announce the completion of an annotated reference assembly for the North American beaver, Castor canadensis! Ryan Langlois and his lab at the University of Minnesota will use the genome to study mechanisms of virus susceptibility and resistance. 🦠 (1/3)
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Nicola Soranzo
Sean Eddy
7 months ago
NIH funding supporting the HMMER and Infernal software projects has been terminated. NIH states that our work, as well as all other federally funded research at Harvard, is of no benefit to the US.
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Michael Love
7 months ago
Up until June 2 (Monday) you can apply for scholarship to attend GBCC2025 at Cold Spring Harbor Laboratory. This is the Bioconductor / Galaxy joint conference at the end of June. You should submit a poster abstract to apply for scholarship. Scholarship details below.
add a skeleton here at some point
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Nicola Soranzo
ELIXIR Europe
7 months ago
Join
#EBIF2025
to discuss
#FederatedData’s
challenges and its global impact 🌍 with experts from industry, academia and international organisations. Register for free 👉
loom.ly/6DEG-M4
@elixiruknode.org
@ga4gh.org
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ELIXIR Bioinformatics Industry Forum (EBIF) 2025 | ELIXIR
BMA House Tavistock Square London WC1H 9JP United Kingdom
https://loom.ly/6DEG-M4
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Nicola Soranzo
ELIXIR-UK
8 months ago
Check this out! Our ELIXIR-UK Head of Node, Carole Goble and BioFAIR UK Director, Tony Burdett waving the flag of best data practices for AI in biosciences at the AIBIO-UK annual meeting this week👇
@aibio-uk.bsky.social
@elixir-europe.org
@biofair.bsky.social
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Nicola Soranzo
Galaxy Project
8 months ago
1 week to go! The Galaxy Training Academy kicks off next Monday! Join learners from around the world for a week of free, self-paced training in topics like: 🧬Genome Assembly 🦠Microbiome 🧠Machine Learning 🌦️Climate 🐍Python ...and more! Register by May 8th!
training.galaxyproject.org/training-mat...
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Galaxy Training Academy 2025
The Galaxy Training Academy is a self-paced online training event for beginners and advanced learners who want to improve their Galaxy data analysis skills. Over the course of one week, we offer a div...
https://training.galaxyproject.org/training-material/events/2025-05-12-galaxy-academy-2025.html
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Nicola Soranzo
Stephen Turner
8 months ago
High-quality metagenome assembly from nanopore reads with nanoMDBG
www.biorxiv.org/content/10.1...
🧬🖥️🧪
github.com/GaetanBenoit...
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Nicola Soranzo
Seth Michael Larson
8 months ago
Another banger from Cory Doctorow about complex systems and fraud (the optimal amount of fraud in a system is never zero):
pluralistic.net/2025/04/24/h...
Cory is keynoting
#PyConUS
2025, so don't miss the opening keynote on Friday!
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Pluralistic: Every complex ecosystem has parasites (24 Apr 2025) – Pluralistic: Daily links from Cory Doctorow
https://pluralistic.net/2025/04/24/hermit-kingdom/
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Nicola Soranzo
Rob Waterhouse
8 months ago
⏩ Is your institute part of the
@elixir-europe.org
Network? ⏩ Do you work with
#biodiversity
#data
? The ELIXIR
#Biodiversity
Community 🟢 Recommendations:
f1000research.com/articles/10-...
🟦 Goals:
elixir-europe.org/communities/...
🟢 Community:
f1000research.com/articles/12-...
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F1000Research Article: Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR.
Read the latest article version by Robert M. Waterhouse, Anne-Françoise Adam-Blondon, Donat Agosti, Petr Baldrian, Bachir Balech, Erwan Corre, Robert P. Davey, Henrik Lantz, Graziano Pesole, Christian...
https://f1000research.com/articles/10-1238/v2
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Nicola Soranzo
Open Access Tracking Project
8 months ago
EOSC and the UK - a community discussion on potential contributions to a UK node | FAIR-IMPACT
https://www.fair-impact.eu/events/fair-impact-events/eosc-and-uk-community-discussion
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Nicola Soranzo
GTN
9 months ago
Survey about a week-long Galaxy Admin Training in Europe Read more at
https://training.galaxyproject.org/training-material/news/2025/04/16/admin-training-survey.html
@galaxyproject.bsky.social
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Nicola Soranzo
Bérénice Batut
9 months ago
🌟 Join Us for Optimising Metagenomics Assembled Genomes (MAGs) Building Workflows! 🌟
galaxyproject.org/events/2025-...
MAGs building wfs are crucial for building new genomes & reducing microbial dark matter! Join our hackathon to collaboratively improve these workflows!
#Metagenomics
#Workflows
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Nicola Soranzo
Hans-Rudolf Hotz
9 months ago
This week, the small scale
@galaxyproject.bsky.social
admins will meet on Thursday (April 17th):
galaxyproject.org/events/2025-...
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Nicola Soranzo
jxtxFoundation
9 months ago
On this day, five years ago, we lost James Taylor. The Galaxy continues, and the JXTX Foundation has enabled numerous students to attend genomic data science meetings. Help us continue by donating here:
jxtxfoundation.org/donate/
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Nicola Soranzo
Galaxy Project
9 months ago
📝 New blog post Released! https://galaxyproject.org/news/2025-03-26-gta-registration-open/ 🌠 Join the GTA2025 and learn how to analyze your data using Galaxy @galaxyproject.bsky.social #
#UseGalaxy
#
#GalaxyProject
#
#UniFreiburg
#
#EOSC
#
#EuroScienceGateway
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Galaxy Training Academy 2025 - Register now ð
ð Join the GTA2025 and learn how to analyze your data using Galaxy
https://galaxyproject.org/news/2025-03-26-gta-registration-open/
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Nicola Soranzo
Galaxy Project
10 months ago
🌍 Get ready for the Galaxy Training Academy 2025! Looking to boost your Galaxy data analysis skills or get started with Galaxy? Join us for GTA2025 – a self-paced online event perfect for beginners and advanced learners. 👉 For more info and to register:
training.galaxyproject.org/training-mat...
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Nicola Soranzo
ELIXIR-UK
10 months ago
🇬🇧 Calling all UK bioinformaticians, researchers, data stewards, data managers... Showcase your work at ISMB/ECCB 2025's UK track! Focus on Biodiversity, Agritech, Health & AI. Submit talks & posters via the official site (select "Bioinformatics in the UK" track)
elixiruknode.org/event/bioinf...
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Bioinformatics in the UK Track at ISMB / ECCB 2025
Join us for a special one-day UK track, showcasing the best of UK bioinformatics research, innovation, and talent – part of the 33rd ISMB and 24th ECCB
https://elixiruknode.org/event/bioinformatics-in-the-uk-ismb-eccb-2025/
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Nicola Soranzo
Michael Love
10 months ago
Galaxy and Bioconductor joint conference in June! Talks and workshops for both users and developers. Speakers: - Sergei Pond - Charlotte Soneson
@csoneson.bsky.social
- Jason Williams
@jasonwilliamsny.bsky.social
@galaxyproject.bsky.social
@bioconductor.bsky.social
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Nicola Soranzo
GTN
11 months ago
SPOC HDR UK ELIXIR-UK CoFest 2025: How did it go? Read more at
https://training.galaxyproject.org/training-material/news/2025/02/14/spoc_hdr_cofest.html
@galaxyproject.bsky.social
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Nicola Soranzo
BRC Analytics
10 months ago
🗓️ Join us for a webinar on March 26, 1PM EDT where we will discuss functionality of https://BRC-Analytics as well as improvements to Galaxy as a whole, workflows as a primary topic. See https://galaxyproject.org/events/2025-03-26-brc-galaxy-webinar/ for more information. #
#UseGalaxy
#
#NIAID
#
#BRC
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Nicola Soranzo
Javier Santoyo
10 months ago
Applying the FAIR Principles to computational workflows.
#FAIR
#Workflows
#Bioinformatics
#Genomics
#ScientificData
🧬 🖥️
www.nature.com/articles/s41...
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Applying the FAIR Principles to computational workflows - Scientific Data
Recent trends within computational and data sciences show an increasing recognition and adoption of computational workflows as tools for productivity and reproducibility that also democratize access t...
https://www.nature.com/articles/s41597-025-04451-9
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Nicola Soranzo
Stephen Turner
11 months ago
MARTi: a real-time analysis and visualisation tool for nanopore metagenomics 🧬🖥️🧪 Preprint
https://www.biorxiv.org/content/10.1101/2025.02.14.638261v1
Source
https://github.com/richardmleggett/MARTi
Docs
https://marti.readthedocs.io
Demo app
https://marti.cyverseuk.org/
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Nicola Soranzo
GTN
11 months ago
Call for Trainers and Helpers for the Galaxy Training Academy 2025 Read more at
https://training.galaxyproject.org/training-material/news/2025/02/14/gtn2025-call-trainer.html
@galaxyproject.bsky.social
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Nicola Soranzo
Earlham Institute
11 months ago
Applications close soon for a Senior Technical
#ProjectManager
to join the BioFAIR Hub at the Earlham Institute. This role will: ☑️ provide key project management leadership ☑️ establish the structure, staffing, partnerships and governance 📆 Apply by: 18 February
#openscience
#FAIRdata
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BioFAIR Senior Technical Project Manager
https://buff.ly/40UaYLT
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Nicola Soranzo
Nature
11 months ago
Use this form to tell us how the new US administration is affecting your research, or suggest future coverage
https://go.nature.com/4aYn9Me
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Are the Trump team’s actions affecting your research? How to contact Nature
Use this form to share information with Nature’s news team, or to make suggestions for future coverage.
https://go.nature.com/4aYn9Me
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A short report from the project I joined at the first HDR UK &
@elixiruknode.org
Joint Hackathon (thanks Wendi and Morgan!):
training.galaxyproject.org/training-mat...
It was a great event, hope to see it organised again next year!
add a skeleton here at some point
11 months ago
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On my way to Nottingham for the first HDR UK &
@elixiruknode.org
Joint Hackathon! Looking forward to contributing to some of the exciting projects for the next 3 days!
elixiruknode.org/event/2025-h...
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Join our first HDR UK & ELIXIR-UK Joint Hackathon in 2025
Get ready for three days of a hackathon bringing together the minds of UK professionals in both health data and life sciences to tackle shared challenges.
https://elixiruknode.org/event/2025-hdr-uk-elixir-uk-hackathon/
11 months ago
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Nicola Soranzo
Galaxy Project
11 months ago
🎉 GBCC2025 Abstracts & Registration Open! Join us June 23-26, 2025, at Cold Spring Harbor Lab for the first Galaxy & Bioconductor Community Conference. 🗓️ Abstract Deadline: April 1 🔗 Submit/Register: https://gbcc2025.org #
#UseGalaxy
#
#GBCC2025
#
#DataScience
#
#OpenScience
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GBCC2025
https://gbcc2025.org
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Nicola Soranzo
Galaxy Project
11 months ago
The Freiburg Galaxy Team is happy to announce this year's European Galaxy Days https://galaxyproject.org/events/2025-10-01-egd2025/ . Please mark you calendar: October 1st to 3rd We are looking forward seeing you in Freiburg ! #
#UseGalaxy
#
#GalaxyProject
#
#UniFreiburg
#
#EOSC
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European Galaxy Days (EGD)
European Galaxy Days meeting in Autumn 2025
https://galaxyproject.org/events/2025-10-01-egd2025/
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Nicola Soranzo
Earlham Institute
11 months ago
Applications close soon for two part-time secondments to the role of BioFAIR Architects. These positions will involve supporting the initial stages of the technical design of the BioFAIR UK infrastructure. 📆 Apply by: 14 February
#FAIRdata
#OpenScience
@elixiruknode.org
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BioFAIR Architect (Secondments)
https://buff.ly/4aReefR
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Nicola Soranzo
Earlham Institute
11 months ago
🆕 Registration has is open for our training course '#Nanopore
#Metagenomics
: from sample to analysis. The course provides a thorough overview of lab and in-field, real-time
@nanoporetech.com
sequencing, including DNA extraction, library preparation, and data analysis and visualisation. 🖥️ 🧬
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Nanopore metagenomics: from sample to analysis 2025
In this in-person workshop, learn how to extract DNA from metagenomic samples, prepare libraries, carry out nanopore sequencing and analyse data.
https://buff.ly/4hr5T4U
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Nicola Soranzo
Carl T. Bergstrom
11 months ago
1. Today the NIH director issued a new directive slashing overhead rates to 15%. I want to provide some context on what that means and why it matters.
grants.nih.gov/grants/guide...
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NOT-OD-25-068: Supplemental Guidance to the 2024 NIH Grants Policy Statement: Indirect Cost Rates
NIH Funding Opportunities and Notices in the NIH Guide for Grants and Contracts: Supplemental Guidance to the 2024 NIH Grants Policy Statement: Indirect Cost Rates NOT-OD-25-068. OD
https://grants.nih.gov/grants/guide/notice-files/NOT-OD-25-068.html
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Nicola Soranzo
Electronic Frontier Foundation
11 months ago
The Investigatory Powers Act could prohibit companies from revealing that the UK government has ordered them to remove encryption. “That raises the real risk of false reliance on a safety feature that isn’t there,” EFF’s Andrew Crocker told
@bloomberg.com
.
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Apple’s Dilemma in UK Over Encryption Alarms Privacy Experts
(Bloomberg) -- The UK government’s attempt to get Apple Inc. to build a backdoor into customer data stored on its cloud system is alarming privacy advocates and US government leaders who warn that the...
https://www.yahoo.com/news/apple-dilemma-uk-over-encryption-214416351.html
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On my way to Brussels for the 2025
#ELIXIR-STEERS
General Assembly, one year into this exciting project!
11 months ago
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Nicola Soranzo
GTN
about 1 year ago
Credit where it’s due: GTN Reviewers in the spotlight We would like to recognise and thank all of the reviewers who have contributed. Today, we are highlighting your efforts across every learning material in the GTN
https://training.galaxyproject.org/training-material/news/2024/12/02/reviewing.html
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Credit where it's due: GTN Reviewers in the spotlight
We would like to recognise and thank all of the reviewers who have contributed to the GTN tutorials; your efforts are greatly appreciated, and we are grateful for your contributions to the GTN communi...
https://training.galaxyproject.org/training-material/news/2024/12/02/reviewing.html
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Nicola Soranzo
Hans-Rudolf Hotz
12 months ago
Next week, the small scale
@galaxyproject.bsky.social
admins will meet for their first meeting this year, on Thursday (Jan 16th):
galaxyproject.org/events/2025-...
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Small Scale Galaxy Admins Meeting
All about Galaxy and its community.
https://galaxyproject.org/events/2025-01-small-scale/
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Nicola Soranzo
Rob Waterhouse
about 1 year ago
Are you an ELIXIR Europe member working on
#biodiversity-data-related
topics? Then join the ELIXIR Biodiversity Community (
elixir-europe.org/communities/...
) in 2025 to explore synergies across Nodes and help to deliver connected data for biodiversity research
f1000research.com/articles/12-...
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Biodiversity Community | ELIXIR
Join this Community Biodiversity represents the full spectrum of organisms on Earth, at population, community, and ecosystem levels.
https://elixir-europe.org/communities/biodiversity
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Nicola Soranzo
ELIXIR-UK
about 1 year ago
Exciting news! 🎉 Tony Burdett is the new Director of BioFAIR! With his expertise in FAIR data & leadership at EMBL-EBI and ELIXIR, BioFAIR's mission to enable global, FAIR-compliant data sharing is in great hands. Learn more:
elixiruknode.org/news/2024/ap...
#FAIRData
#LifeSciences
#Leadership
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ELIXIR-UK welcomes appointment of Tony Burdett – BioFAIR Director
ELIXIR-UK is proud to see BioFAIR, originally conceived within its community, take an important step forward with the appointment of Tony Burdett.
https://elixiruknode.org/news/2024/appointment-of-tony-burdett-as-director-of-biofair/
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Nicola Soranzo
Earlham Institute
about 1 year ago
VACANCY: We're looking for a
#postdoc
with experience in
#singlecell
and
#spatialtranscriptomics
data, and an understanding of statistics in biology, to join the group of Prof Irene Papatheodorou, as part of the
#Gut
#CellAtlas
programme. 📅 Apply by: 06 January 2025 📄 Contract length: 24 months
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Postdoctoral Research Scientist
https://www.earlham.ac.uk/vacancy/postdoctoral-research-scientist-papatheodorou
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Nicola Soranzo
Earlham Institute
about 1 year ago
Applications close Friday (20) for PhD projects as part of the
@daniorecode.bsky.social
MSCA doctoral network. Project available with Prof Irene Papatheodorou working on comprehensive cell atlases of regeneration in three different species.
#zebrafish
#singlecell
add a skeleton here at some point
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Nicola Soranzo
Richard Ostler
about 1 year ago
This is good news Friday
www.ukri.org/news/ukri-de...
! Good to see
#FAIRData
and a more integrated and consistent approaches to data management are in the pipeline plus promoting open research
#OpenData
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UKRI developing new research data policy framework
New pan-UKRI research data policy framework will maximise the value of data arising from UKRI funding and support an open research and innovation culture.
https://www.ukri.org/news/ukri-developing-new-research-data-policy-framework/
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Nicola Soranzo
European Movement UK
about 1 year ago
This is Erasmus: A transformative EU initiative providing education, training, and growth opportunities. Returning to Erasmus+ means empowering the UK with life-changing experiences and skills. Learn more and support our campaign to bring Erasmus+ back!
www.europeanmovement.co.uk/this_is_eras...
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This is Erasmus
Erasmus+ empowers students through opportunities to study, work, and grow across Europe. Join us in bringing this programme back to the UK
https://www.europeanmovement.co.uk/this_is_erasmus
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Nicola Soranzo
Earlham Institute
about 1 year ago
Through a blend of lectures and hands-on sessions, this course, led by
@conradn.bsky.social
and team will provide you with the skills necessary to analyse base modification profiles in various contexts. 📍 Online, via Zoom 🗓️ Register by: 03 January 2025
@nanoporetech.com
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Detection of DNA base modification using nanopore sequencing 2025
In this comprehensive two-day course, participants will learn how to use nanopore sequencing to detect DNA base modifications.
https://www.earlham.ac.uk/events/detection-dna-base-modification-using-nanopore-sequencing-2025
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Nicola Soranzo
Peter van Heusden (he/him) 🗿
about 1 year ago
Hey folks! We're hiring at SANBI (at University of the Western Cape in Cape Town, South Africa). This is part of the ISO in a Box project and we're looking for a bioinformatics developer, some people skilled in Linux and Scientific Computing and some training folks.
www.sanbi.ac.za/vacancies/
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Vacancies – SANBI – South African National Bioinformatics Institute
https://www.sanbi.ac.za/vacancies/
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Nicola Soranzo
Seth Michael Larson
about 1 year ago
Last week the Python package "Ultralytics" suffered a supply-chain attack on its build and release process. This is a review of the attack from
@pypi.org
's perspective. There's plenty of advice for how Python projects can increase their
#security
posture:
blog.pypi.org/posts/2024-1...
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Supply-chain attack analysis: Ultralytics - The Python Package Index Blog
Analysis of a package targeted by a supply-chain attack to the build and release process
https://blog.pypi.org/posts/2024-12-11-ultralytics-attack-analysis/
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Nicola Soranzo
Earlham Institute
about 1 year ago
🆕 We're recruiting a
#postdoc
to join Prof Irene Papatheodorou at the Earlham Institute. The role will work with
#scRNASeq
data as part of a wider collaboration contributing to the Gut
#CellAtlas
– normal and Crohn’s Disease research programme. 📅 Apply by 06 January 2025
#singlecell
#scijobs
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Postdoctoral Research Scientist
https://www.earlham.ac.uk/vacancy/postdoctoral-research-scientist-papatheodorou
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