🖱️ Picking out individual cells in distorted microscopy images is now as easy as clicking a button, thanks to Cellpose3: www.janelia.org/news/newest-...

Super excited to share our new method: Context-dependent Identification of Spatial Motifs (CISM)! 🚀 A two-step approach for uncovering fine-scale intercellular modules associated with human disease states from single-cell spatial data. doi.org/10.1101/2025... 🧵 1/n

We are proudly hosting 𝐃𝐫. 𝐓𝐚𝐥𝐥𝐞𝐲 𝐋𝐚𝐦𝐛𝐞𝐫𝐭 @talley.codes (CITE, Harvard Medical School): 𝐒𝐢𝐦𝐮𝐥𝐚𝐭𝐢𝐧𝐠 𝐫𝐞𝐚𝐥𝐢𝐬𝐭𝐢𝐜 𝐥𝐢𝐠𝐡𝐭 𝐦𝐢𝐜𝐫𝐨𝐬𝐜𝐨𝐩𝐲 𝐢𝐦𝐚𝐠𝐞𝐬 𝐮𝐬𝐢𝐧𝐠 𝐦𝐢𝐜𝐫𝐨𝐬𝐢𝐦 When: 𝐌𝐚𝐲 𝟐𝟗𝐭𝐡 @ 𝟏𝟏 𝐚𝐦 𝐄𝐃𝐓 (Boston time) Join us on Zoom! harvard.zoom.us/j/9762343464...

🚀🔬🦠 Releasing 🤖Cellpose-SAM🤖, a cellular segmentation algorithm with superhuman generalization 🦸‍♀️. Try it now on 🤗 huggingface.co/spaces/mouse... paper: www.biorxiv.org/content/10.1... w/ @computingnature.bsky.social 1/n

🥳 Happy #DNADay! 🧬 What better way to celebrate than with cycleHCR: one of our newest tools, developed by the Liu Lab, that uses a novel DNA barcode system to track hundreds of RNA & protein molecules in single cells within thick biological samples ➡️ www.janelia.org/news/new-met...

Very happy to see our work finally in print! www.pnas.org/doi/10.1073/... TLDR: Tilt illusion is not a bug, but a feature of a well-designed visual system that maximizes information capacity adaptively based on spatial context. (1/6)

How can AI help you to analyze your microscopy images? Find out at the "Machine Learning for Microscopy Image Analysis" course at the @mblscience.bsky.social in Woods Hole from Aug 22-Sep 6! Applications are due 🚨 April 30 🚨 Read on for more! 👇 www.mbl.edu/education/ad...

Igor Siwanowicz of @hhmijanelia.bsky.social captured these photos of pollen grains on the sigma of a morning glory flower. This is part of the early stage in creating a seed, it might also be the reason why you can’t stop sneezing!

I was wrong before, *this* was actually tailor-made for me.

Yes, the paper is cool... BUT if you’re a fan of fly vision and neuroanatomy, the Supplemental Materials are the real treat 🎉 We made a catalog of all the cells and it's ✨beautiful✨ 🧭 Interactive explorer: reiserlab.github.io/male-drosoph...

I know there's a 𝒍𝒐𝒕 going on right now, but I couldn’t be prouder to share this long-incubated labor of love: the complete connectome of the male 𝐷𝑟𝑜𝑠𝑜𝑝ℎ𝑖𝑙𝑎 optic lobe 🧠🪰 🔗 www.nature.com/articles/s41...

in the crowd ... an ant cricket (possibly a desert ant cricket, Myrmecophilus manni) cruises amongst 100s of ants beneath a flipped stone oak woodland near Warner Springs CA

the thomas sanders x dropout combo feels tailor made for me

Join Janelia Senior Group Leader & Head of Computation & Theory Stephan Saalfeld @herrsaalfeld.bsky.social this Thursday at #ScienceOnTap at Old Ox Brewery, hosted by @loudounlibrary.bsky.social 🤖 Learn how #AI aids in understanding the complexity of biological systems & their interactions.

It can feel like we have made no progress in the fight against climate change. That's not the case. youtu.be/h1jOqyjcO4g?...

We read "Large Concept Models" in our reading group. It models language at the sentence resolution - "concepts". We had lots of thoughts about it! You can read them in our new Janelia CVML blog post: janelia-cvml.github.io/blog/posts/L... #ML #AI #Janelia @adjavon.bsky.social @bogovicj.bsky.social

The preprint is now available! Check it out... and... if you want to repost, why not 👇the post down here👇, so others get the bioRxiv link right away? Oh, and... 𝐭𝐡𝐚𝐧𝐤𝐬! 🙏 doi.org/10.1101/2025... bsky.app/profile/flor...

Immagine you could image two cellular structures in the same fluorescent channel and still reliably get them separated afterwards… What would you do with this? Now… what would you do if that also worked with 4 structures at once? 👇 #MicroSplit #preview🧵

📢 Submissions are now open for the CellMap Segmentation Challenge. Build the best method for segmenting cellular organelles in vEM using our 289 annotated volumes, 40 organelle classes, and 22 diverse cell and tissue types. 🔗 hhmi.news/410evJQ

Different year, different conference, same vibe.

Can you spot the difference between the cells on the left and right? Read on for the solution (and a preprint announcement)… 👇 1/6

📢📢📢 The 12th iteration of the workshop on Fine-Grained Visual Categorization will be taking place at #CVPR2025 this year: sites.google.com/view/fgvc12/... There is a separate call for 4 page non-archival and 8 page official CVPR proceedings papers.

PLEASE SHARE: Postdoc Opportunity in Montpellier France. 18 months starting May 2025: Generative AI for Studying the Influence of Habitats on the Diversification of Bird Color Patterns. Applications and information here: tinyurl.com/2368teak @evoldir.bsky.social

We're at #CellBio2024! Come visit us in the exhibit hall to learn more about Beautiful Biology, AI@HHMI, our joint graduate programs with Johns Hopkins, our Theory Fellow program, a fun CellMap challenge, and many open positions across all of @hhmi.bsky.social.