@tomdna.bsky.social
📤 13
📥 25
📝 2
reposted by
ERGA - European Reference Genome Atlas
2 months ago
🇩🇪💻 ERGA was present at the
@elixir-europe.org
#BioHackEU25
in Berlin last week! Our Annotation & Data Analysis Committees worked on two projects: - Benchmarking BUSCO genes for
#phylogenomics
- Streamlining
#FAIR
metadata for genome annotations
#ERGA
#community
#bioinformatics
#genomics
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reposted by
ERGA - European Reference Genome Atlas
3 months ago
🏙️ Last week,
#ERGA
joined the
@vertebrategenomes.bsky.social
#VGP
Conference in NYC, a great chance to connect with
@ebpgenome.bsky.social
projects and share progress on
#FAIR
genome assemblies & reporting under
@biogeneurope.bsky.social
www.erga-biodiversity.eu/post/erga-me...
#genomes
#conference
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ERGA meets VGP in New York City
Last week, ERGA was present at the Vertebrate Genomes Project 2025 Conference, held at The Rockefeller University in New York City from September 30 and October 1. ERGA and VGP share a long-standing c...
https://www.erga-biodiversity.eu/post/erga-meets-vgp-in-new-york-city
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reposted by
Marc A. Marti-Renom
7 months ago
Diego
@diegomics.bsky.social
visited us years ago to learn Hi-C to produce the best possible genome assembly of the impressive Condor of the Andes (Argentina). They managed!! 👏🏼👇🏼
onlinelibrary.wiley.com/doi/10.1111/...
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3
3
reposted by
Biodiversity Genomics Europe (BGE)
7 months ago
The 3rd episode of
#GenomicConnections
, the new
#sciencepodcast
, is now live! 💥 This time, it’s about ‘DNA
#Metadata
and FAIR Play’. Go to 🔗:
biodiversitygenomics.eu/2025/06/19/g...
ergabiodiv.bsky.social
iboleurope.bsky.social
#sequencing
#biodiversity
#BGE
@ebi.embl.org
@enasequence.bsky.social
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Genomic connections #3 - DNA Metadata and FAIR Play with Joana Pauperio - Biodiversity Genomics Europe
The European Reference Genome Atlas (ERGA) and the European node of the International Barcode of Life (iBOL Europe), two international communities of scientists brought together under the Biodiversity...
https://biodiversitygenomics.eu/2025/06/19/genomic-connections-3-dna-metadata-and-fair-play-with-joana-pauperio/
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2
reposted by
EMBL-EBI
7 months ago
Listen to the latest episode of
#GenomicConnections
featuring Joana Pauperio, Biodiversity Curator at
@enasequence.bsky.social
She joins
@ergabiodiv.bsky.social
to discuss the power of metadata and how it supports
#FAIR
data in biodiversity genomics.
@biogeneurope.bsky.social
add a skeleton here at some point
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6
4
reposted by
iBOL Europe
7 months ago
Why is metadata so critical for biodiversity genomics research, and how does it help ensure that data are FAIR? In the third episode of Genomic Connections, we talk about all things metadata with Joana Castro Pauperio from
@ebi.embl.org
@enasequence.bsky.social
:
iboleurope.org/genomic-conn...
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Genomic Connection #3 – DNA Metadata and FAIR Play
In the third episode of Genomic Connections, Christian and Kasia chat with Joana Pauperio, Biodiversity Project Manager at the European Nucleotide Archive, in the European Bioinformatics Institute (EM...
https://iboleurope.org/genomic-connection-3-dna-metadata-and-fair-play/
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4
reposted by
ERGA - European Reference Genome Atlas
7 months ago
🎧 What is metadata and how does it help make research outputs
#FAIR
? Find out in the latest
#GenomicConnections
episode: DNA Metadata & FAIR Play with Joana Pauperio from
@ebi.embl.org
🎙️
www.erga-biodiversity.eu/post/genomic...
@enasequence.bsky.social
#SciencePodcast
#Metadata
#podcast
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Genomic Connections #3 - DNA Metadata and FAIR Play
In the third episode of Genomic Connections, Kasia and Christian chat with Joana Pauperio, Biodiversity Project Manager at the European Nucleotide Archive, in the European Bioinformatics Institute (EM...
https://www.erga-biodiversity.eu/post/genomic-connections-3-dna-metadata-and-fair-play
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3
reposted by
ERGA - European Reference Genome Atlas
8 months ago
#ERGAReads
| Scientific
#data
analysis should be scalable, transparent, and shareable - yet computational
#workflows
are often fragmented and hard to find.
#WorkflowHub
tackles this with a unified registry that promotes reproducibility, and
#FAIRdata
: 🔗
www.nature.com/articles/s41...
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9
4
reposted by
Galaxy Project
8 months ago
Using the Galaxy infrastructure and workflows to teach de-novo genome assembly and annotation https://galaxyproject.org/news/2025-05-19-bge-workshops/ #
#UseGalaxy
#
#GalaxyProject
#
#EOSC
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3
4
reposted by
ERGA - European Reference Genome Atlas
8 months ago
📚 Learn how the
@galaxyproject.bsky.social
training infrastructure is being used as part of
@biogeneurope.bsky.social
to teach early-career researchers how to produce high-quality de novo
#genome
assemblies and annotations. ➡️
galaxyproject.org/news/2025-05...
#genomes
for
#biodiversity
#training
add a skeleton here at some point
0
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reposted by
Silvia Manrique
10 months ago
🧪📣Course alert!📣🧪 Applications are open for the new edition of the
@EMBO.org
course on Genome assembly and downstream analysis in Florence 🇮🇹. We can’t wait to welcome a new group of participants after the success of🇧🇪 & 🇪🇸 editions. 🗓️ Apply by May 31. 🧪🧬🖥️
#EMBOgenomeSeq
#ScienceTraining
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Genome sequencing, assembly, curation, and downstream analyses
Advances in long-read sequencing methods such as Pacific Biosciences (PacBio) and Oxford Nanopore Technologies (ONT) and scaffolding approaches using chromosome conformation capture have significantl…
https://meetings.embo.org/event/25-genome-seq
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9
7
reposted by
ERGA - European Reference Genome Atlas
9 months ago
Hands-on @EMBO course in
#genome
sequencing, assembly, curation, and downstream analyses: 08 –12 Sep 2025 in
#Florence
Italy 🇮🇹☀️ DEADLINE: 31/05!
meetings.embo.org/event/25-gen...
#EMBOgenomeSeq
@biogeneurope.bsky.social
@ebpgenome.bsky.social
#assembly
#bioinformatics
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Genome sequencing, assembly, curation, and downstream analyses
Advances in long-read sequencing methods such as Pacific Biosciences (PacBio) and Oxford Nanopore Technologies (ONT) and scaffolding approaches using chromosome conformation capture have significantl…
https://meetings.embo.org/event/25-genome-seq
0
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The genomes of all sea-turtle species are now online and ready for use! Find the haplotype-resolved assemblies from our preprint below on ENA
tinyurl.com/seaturtle-ge...
🐢
#genomes
#turtles
add a skeleton here at some point
10 months ago
0
3
1
reposted by
bioRxiv Genomics
10 months ago
Haplotype-resolved reference genomes of the sea turtle clade unveil ultra-syntenic genomes with hotspots of divergence
https://www.biorxiv.org/content/10.1101/2025.03.26.644878v1
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reposted by
ERGA - European Reference Genome Atlas
10 months ago
🔔 New ERGA-
@biogeneurope.bsky.social
reference
#genome
of the Crete spiny mouse! This resource will help shed light on the phylogenetic relationships within the genus Acomys. 🔗Read the genome report:
preprints.arphahub.com/articles.php...
#Crete
#biodiversity
#genomics
#endemic
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reposted by
Tomek Mamos
11 months ago
Another amazing workshop within the Biodiversity Genomics Europe in PolBOL
www.polbol.uni.lodz.pl/szczegoly/dn...
behind us. All possible thanks to synergy of
@iboleurope.bsky.social
and
@ergabiodiv.bsky.social
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3
reposted by
Bat1K Genome Project
11 months ago
We’re looking for photos of Triaenops persicus for our
#Bat1K
21 Family Publication! 🦇 If you have any or know someone who does, let us know! 🙌 Of course, full credit will be given to the owner. Drop us a message or tag someone who might help! 📨
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reposted by
Bat1K Genome Project
12 months ago
🚨Bat1K Paper Alert🚨There couldn’t be a better first post for us on this app - excited to share 10 new bat genomes and groundbreaking insights into bat immunity and viral resistance! 🌍🔬
www.nature.com/articles/s41...
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Bat genomes illuminate adaptations to viral tolerance and disease resistance - Nature
A systematic analysis of 115 mammalian genomes, including 10 new bat genomes, reveals prevalent positive selection in immune genes in bats and shows key adaptations in the antiviral gene ISG15 that ai...
https://www.nature.com/articles/s41586-024-08471-0
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reposted by
Karolinska Institutet
12 months ago
Researchers have mapped the genome of the Iberian ribbed newt and revealed how the composition and organization of the DNA are linked to its ability to regenerate entire body parts. Published in Cell Genomics by
@andrassimon.bsky.social
et al.
news.ki.se/mapping-of-a...
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10
3
reposted by
Nature
12 months ago
Nature research paper: Bat genomes illuminate adaptations to viral tolerance and disease resistance
https://go.nature.com/3EfZn2e
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Bat genomes illuminate adaptations to viral tolerance and disease resistance - Nature
A systematic analysis of 115 mammalian genomes, including 10 new bat genomes, reveals prevalent positive selection in immune genes in bats and shows key adaptations in the antiviral gene ISG15 that aid disease resistance in bats, including to coronaviruses.
https://go.nature.com/3EfZn2e
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reposted by
Bat1K Genome Project
12 months ago
We're new here—help us spread the word! 🦇 🚀 Please like, follow, and share as we build our presence. We don’t have all the handles yet, so it is difficult tag everyone just yet!! If you are here - let us know 🙌💙
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reposted by
ERGA - European Reference Genome Atlas
about 1 year ago
Read this new ERGA-BGE
#GenomeReport
and celebrate the first-ever reference genome for a species in the order
#Solifugae
! 🎉 ➡️
www.biorxiv.org/content/10.1...
Want to learn more about the little known
#Solifuges
? Here is an interesting reference:
academic.oup.com/zoolinnean/a...
add a skeleton here at some point
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The 🐐
add a skeleton here at some point
about 1 year ago
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reposted by
ERGA - European Reference Genome Atlas
about 1 year ago
Introducing
#ERGAReads
👓 📖 🧬 Every Wednesday, we share a selection of community-recommended
#research
articles on
#biodiversity
and
#genomics
. Stay tuned and join the conversation! Feel free to suggest papers by leaving a comment💬
#ERGACommunity
@ebpgenome.bsky.social
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2
reposted by
ERGA - European Reference Genome Atlas
about 1 year ago
#ERGAReads
| Too many genomes to analyze?! GENESPACE is an important tool in the
#comparative
#genomics
toolbox🔧⚙️ It integrates conserved gene order and orthology to help define the expected physical position of genes across multiple
#genomes➡️https://elifesciences.org/articles/78526
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