Isabell Grothaus
@isabellgrothaus.bsky.social
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PostDoc at
#Dioscuri
Centre in @MCB_UJ and @MPIbp | Computational glycobiochemist Ultrarunner 🏔 🏳️🌈
Glycans' conformers 🥦 majorly influence their processing by CAZymes. Linkage and ring distortion are correlated!🤩 Check-out our new preprint:https://www.biorxiv.org/content/10.1101/2025.06.27.661892v1 Wonderful colab with Carme Rovira!
#glycotime
#CAZymes
6 months ago
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Matt Sikora
6 months ago
Puzzled 🧩 how glycans 🍬influence protein life? With
@rommiee.bsky.social
@rocovino.bsky.social
, Attilio Vargiu and Giorgio Colombo we made
@cecamevents.bsky.social
event that will clear things out for you!
tinyurl.com/x7ajbzn9
Deadline 30.06! (look at the lineup...)
@ncn.gov.pl
@mpibp.bsky.social
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Isabell Grothaus
Rafael C. Bernardi
10 months ago
🚀 First Bluesky Post! 🎉 VMD 2.0 Alpha is here! Released today at BPS 2025, this is the biggest update in 30 years—new UI, real-time ray tracing, fast surfaces, UHD & touchscreen support. Monthly updates coming in 2025! Try it now!
#VMD
#BPS2025
#MolecularVisualization
www.ks.uiuc.edu/Research/vmd...
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Isabell Grothaus
BioExcel CoE
10 months ago
Our webinar on new features and performance improvements in GROMACS 2025 is next week on Tuesday 18 February at 15:00 CET Don't forget to register ➡️
bit.ly/40Ebbme
#webinar
#moleculardynamics
#GROMACS
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Isabell Grothaus
Alejandra Caraballo
11 months ago
This is a 5 alarm fire. They're going to pull down all publicly available data, studies, guidance, etc that involves LGBTQ people so when the worst happens to us, no one will know. They're actively trying to erase us.
gizmodo.com/cdc-ordered-...
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CDC Ordered to Scrub Website of Words Like 'Transgender' and 'LGBT'
A CDC employee spoke with Gizmodo about the
https://gizmodo.com/cdc-ordered-to-scrub-website-of-words-like-transgender-and-lgbt-2000557177
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Isabell Grothaus
Carolyn Bertozzi
11 months ago
www.forbes.com/sites/roncar...
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One More Time: Why Diversity Leads To Better Team Performance
Discussions on diversity in the workplace can be heated and contentious. But the data still shows more diverse teams outperform their less diverse peers. Here's how.
https://www.forbes.com/sites/roncarucci/2024/01/24/one-more-time-why-diversity-leads-to-better-team-performance/
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Isabell Grothaus
Jörg Enderlein
11 months ago
Georg Restle: „And the AfD laughs and smirks. “Now a new era begins!” The name Merz will go down in history as the man who, for the first time since 1945, made common cause with fascists. 80 years after the liberation of Auschwitz, the conservatives have learned nothing from history.“
add a skeleton here at some point
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Isabell Grothaus
Gräter lab
11 months ago
Grappa is out:
pubs.rsc.org/en/content/a...
We are looking forward to feedback from and extensions by the community! Try it out for your favorite (bio)molecules - ligands, post-translational modifications, metal-enzymes, DNA, ...
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Grappa – a machine learned molecular mechanics force field
Simulating large molecular systems over long timescales requires force fields that are both accurate and efficient. In recent years, E(3) equivariant neural networks have lifted the tension between co...
https://pubs.rsc.org/en/content/articlelanding/2025/sc/d4sc05465b
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Isabell Grothaus
Matthew Gibson
11 months ago
We have a
#postdoc
researcher vacancy @UoMChemistry @UoMMIB . Join us to use our new automated glycan assembly (Glyconeer) platform to discover next generation sustainable polysaccharide materials in world-class labs and environment.
#glycotime
Pls RT.
www.jobs.manchester.ac.uk/Job/JobDetai...
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Isabell Grothaus
EuroHPC Joint Undertaking
11 months ago
Hello EuroHPC Community!👋 As of today, the EuroHPC Joint Undertaking is officially on
#BlueSky
! 🦋 We look forward to sharing updates and insights with you here. Follow us to stay informed on
#EuroHPC
developments! 💻⚡
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Isabell Grothaus
Matthieu Chavent
11 months ago
I am wondering if there are papers about starting a MD simulation project (eg 10 simple rules, Living journals of comp Mol Science , etc ..) ? What do you do/need ? It may be useful for students starting in the lab
@lindorfflarsen.bsky.social
@justinlemkulvt.bsky.social
@agrossfield.bsky.social
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Thanks for all the comments! Here comes my "not so elegant but so far only" solution as a Christmas gift 🎄 1. Build correct structure with
glycam.org
2. Reorder and rename atoms to fit CHARMM convention topology from Charmm-gui 3. Use topology & FF files from Charmm-gui with corrected structure
add a skeleton here at some point
about 1 year ago
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Isabell Grothaus
Max Bonomi
about 1 year ago
Do you want to work at the interface of molecular simulations, structural biology experiments and
#AI
? Come to Paris for a PhD at
@pasteur.fr
1 PhD position is available in our lab funded by ERC_Research. Please repost!!
#compchem
#compbio
Info 👇
research.pasteur.fr/b/15Hr
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One PhD thesis in integrative structural biology | Research - Institut Pasteur
https://research.pasteur.fr/b/15Hr
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Isabell Grothaus
Bussi Lab
about 1 year ago
📢 New
#preprint
describing our community effort to share
#plumed
tutorials
arxiv.org/abs/2412.03595
! Explore the tutorials at
www.plumed-tutorials.org
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PLUMED Tutorials: a collaborative, community-driven learning ecosystem
In computational physics, chemistry, and biology, the implementation of new techniques in a shared and open source software lowers barriers to entry and promotes rapid scientific progress. However, ef...
https://arxiv.org/abs/2412.03595
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Dear
#comchem
#glycotime
folks 🍭, I need your help! Does anyone know a tool to build sulfated polysaccharides and get structure und topology files for GROMACS with CHARMM36 FF?🤔 Unfortunately Charmm-gui is placing sulfate groups in wrong orientations. Please RT!
#moleculardynamics
about 1 year ago
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Isabell Grothaus
Giovanni Bussi
about 1 year ago
Preliminary results from
#CASP16
assessors suggest our prediction scored very well - we obtained the highest cross correlation between predicted and experimental density maps 🎉. Also Simon Poblete from southeRNA did very well 👏
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CompBioPhys
about 1 year ago
📢 It's our great pleasure to invite you all to our upcoming
#Workshop
on "Computer Simulation and
#Theory
of Macromolecules" in
#Hünfeld
on March 7-8, 2025 in
#hybrid
format! See you online or on-site! More details are provided here:
www.mpinat.mpg.de/workshop/hue...
#TheoryHünfeld2025
#biophysics
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Isabell Grothaus
Robert Aboukhalil
about 1 year ago
“We don’t value software, data, and methods in the same way we value papers, even though those resources empower millions of scientists” 💯
www.statnews.com/sponsor/2024...
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New report highlights the scientific impact of open source software
Two of the scientists who won this year’s Nobel Prize for cracking the code of proteins’ intricate structures relied, in part, on a series of computing
https://www.statnews.com/sponsor/2024/11/26/new-report-highlights-the-scientific-impact-of-open-source-software/
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🥳Hugh thank you to
@brukercorporation.bsky.social
and the University of Bremen for awarding me this year's study prize for my dissertation on the decoding of the GlycoCode with a focus on the influence of the 3D dynamics of glycans on biological processes.
#glycotime
#massspec
#moleculardynamics
❤️
about 1 year ago
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Isabell Grothaus
Anne Imberty
about 1 year ago
Still time to register to awsome Glycobiology Gordon Research Conference 2025. We have a fantastic line of speakers and this will be top
#glycotime
in Tuscany !! Register at
www.grc.org/glycobiology...
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