Marco Gabrielli
@mgabrielli.bsky.social
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#DrinkingWaterMicrobiology
| PostDoc | Eawag
http://mgabriell1.github.io
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Marco Gabrielli
Eawag Aquatic Research
26 days ago
Eawag scientist Serina Robinson receives the ERC Starting Grant. She is investigating how microbial enzymes bind PFAS. 👉
www.eawag.ch/en/info/port...
@erc.europa.eu
@ethz.ch
#Eawag
#pollutants
#foreverchemicals
#ERCStG
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Marco Gabrielli
Julie Johnston
3 months ago
Protect Trans Scientists. cowritten with a lot of amazing people (I tagged those I could find but there are so many more incredible folks)
www.science.org/doi/10.1126/...
@thepunkscientist.bsky.social
@jlw-ecoevo.bsky.social
@bfrancescol.bsky.social
@drsueishaq.bsky.social
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Protect transgender scientists
Transgender and gender nonconforming (TGnC) people are a primary target of the Trump administration. Multiple executive orders seek to erase TGnC protections; mandate denial of gender identity; and ba...
https://www.science.org/doi/10.1126/science.ady0962
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Marco Gabrielli
Rolf Kümmerli
4 months ago
We are looking for a highly motivated postdoc to work on pathogen interactions. Please send in your application via
jobs.uzh.ch/job-vacancie...
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UZH: Postdoctoral researcher in microbiology
The Department of Quantitative Biomedicine is an interdisciplinary biomedical research unit that combines basic science with biotechnological and medical research, using both experimental and computat...
https://jobs.uzh.ch/job-vacancies/postdoctoral-researcher-in-microbiology/cdc6739a-e48a-4ea1-bd1b-da257177fe26
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Marco Gabrielli
Caitlin R Proctor
4 months ago
Having fun catching up with
#Eawag
at
#MEWE11
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Marco Gabrielli
Segata Lab
4 months ago
There is still time to apply for
#PhD
studentships with us! Thanks for spreading the word.
#phdchat
#phdlife
#academiclife
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Marco Gabrielli
Julie Johnston
5 months ago
Please support my students kickstarter to finish an educational wastewater video game we started building! I taught an interdisciplinary capstone class video game where programmers, artists, sound designers, and education students could work together!
www.kickstarter.com/projects/que...
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What the Floc: Educational Wastewater Video Game
Educational video game where players operate a wastewater treatment plant to protect the city and environment from pollution!
https://www.kickstarter.com/projects/queermsfrizzle/what-the-floc-educational-wastewater-video-game?ref=user_menu
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Marco Gabrielli
Michael Brockhurst
8 months ago
☎️ Calling
#MEvoSky
☎️ 2x 5-year research associate / research assistant positions in experimental evolution ERC-funded project: How do mobile genetic elements and defence systems shape bacterial genome evolution? Join the friendly and exciting
@mermanchester.bsky.social
community in Manchester!
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Viktoria Cologna
8 months ago
Our global study on the state of trust in scientists is now out in Nature Human Behaviour! 🥳 With a team of 241 researchers, we surveyed 71,922 people in 68 countries, providing the largest dataset on trust in scientists post-pandemic 👇🧵https://www.nature.com/articles/s41562-024-02090-5
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IWA MEWE 2025
9 months ago
📢 Just 2 days left for
#MEWE11
abstracts! Deadline: Jan 10 Submit ASAP at
mewe11.ce.gatech.edu/call-for-papers
The 11th International Water Association Conference on Microbial Ecology and Water Engineering awaits your research! 🦠💧
#microbialecology
#microbiomeengineering
#water
#sustainability
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Call for papers – IWA MEWE-11 CONFERENCE
https://mewe11.ce.gatech.edu/call-for-papers
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Marco Gabrielli
IWA MEWE 2025
10 months ago
📢 Abstract submission deadline for
#mewe11
extended to Jan 10, 2025! Early submissions (before Dec 15) are now under review. Later submissions reviewed rolling basis. Learn more & submit:
mewe11.ce.gatech.edu/call-for-papers
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Call for papers – IWA MEWE-11 CONFERENCE
https://mewe11.ce.gatech.edu/call-for-papers
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Marco Gabrielli
A. Murat Eren (Meren)
10 months ago
We are very happy to announce a free-to-attend
#anvio
workshop and ECR symposium in Oldenburg to discuss integrated microbial 'omics and learn applications of anvi'o. More information and application link (application deadline is Jan 10):
anvio.org/workshops/20...
Please apply and/or circulate 😇
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Be sure to give a read to Alessio's latest work! Cool combination of cultivation, bioinformatics and LC-MS to understand Legionella antagonism 🦠
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10 months ago
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Marco Gabrielli
Martin Hunt
10 months ago
I just made a first release of TNA - new tool to compare 2 bacterial genomes. Is shamelessly inspired by ACT, but should be simpler to use. Drag-n-drop two genomes: it runs BLAST for you and then you can visualize. For Mac, Windows 11, Linux
tna.readthedocs.io
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TNA documentation — TNA 0.0.1 documentation
https://tna.readthedocs.io/en/v0.1.0/
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Marco Gabrielli
Microbial Systems Ecology Lab
11 months ago
Check out our new paper, led by Astrid Stubbusch and
@nonresidentdesi.bsky.social
on bacterial degradation-dispersal cycles, out in
@elife.bsky.social
!
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Marco Gabrielli
Anna S. Weiss
10 months ago
My friend & colleague
@micsysecolab.bsky.social
Matthias has written this extremely insightful and fascinating perspective on bacterial collective metabolism, out now in
@naturemicrobiol.bsky.social
. So happy to see this out & super excited for proteome allocation!
www.nature.com/articles/s41...
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A framework for understanding collective microbiome metabolism - Nature Microbiology
This Perspective explores why microbiome members perform partial metabolism of substrates and suggests that proteome efficiency is a driver of collective microbiome metabolism.
https://www.nature.com/articles/s41564-024-01850-3
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Glen Dsouza
11 months ago
New preprint! A bit of new direction for my research program: How can bacteria get nutrients when autonomous growth is not possible or passive leakage is not enough to support high growth? Shoot spearguns with toxins into other cells and leak out nutrients!
www.biorxiv.org/content/10.1...
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Antagonism as a foraging strategy in microbial communities
In natural habitats, nutrient availability limits bacterial growth. We discovered that bacteria can overcome this limitation by acquiring nutrients through lysing neighboring cells via contact-depende...
https://www.biorxiv.org/content/10.1101/2024.11.04.621785v1
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How many species of Legionella exist? If you ask your petri dish the answer is around 75, but is this the real number? And how are they different? Excited to share the answer to those questions, after an analysis of over 5000 genomes!
doi.org/10.1101/2024...
1/n
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Expansion, restructuring and characterization of the Legionellaceae family
Legionellaceae are a large and widespread family of facultative intracellular bacteria with high clinical relevance. While Legionella pneumophila , the most clinically relevant species, is relatively ...
https://doi.org/10.1101/2024.10.21.619444
11 months ago
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[ 📢 Job opportunity 📢 ] We are looking for a research assistant to investigate the prevalence of Legionella species 🦠 in WWTPs across Switzerland, here at Eawag Apply here
apply.refline.ch/673277/1198/...
, get in touch to know more or retweet 🙏
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Research assistant (80 – 100%) in the field of Legionella monitoring in wastewater treatment systems
The Department of Environmental Microbiology (Umik) and Engineering (ENG) have a joint vacancy for a
https://apply.refline.ch/673277/1198/pub/1/index.html
about 1 year ago
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Marco Gabrielli
Ashwin Sudarshan
over 1 year ago
Poster up
#ASMicrobe
based on our latest preprint! Happy to chat about this work in case anyone is interested!
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Marco Gabrielli
Ameet Pinto
over 1 year ago
#ASM2024
is right around the corner and our research group has lots to share with the ASM community. We have four posters and two oral presentations at hashtag#ASM2024. Please do consider stopping by to hear about some of our recent research findings. read below thread!! (1/n)
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What is the current best strategy to curate assemblies of Illumina-only bacterial isolates?🧐🧬 I want to curate some genomes for which a closed "species representative" is available and I'm wondering what people are using nowadays
#bioinfo
#microbiology
over 1 year ago
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Marco Gabrielli
Ameet Pinto
over 1 year ago
Very excited for this new
@biorxivpreprint.bsky.social
led by
@ashsudarshan.bsky.social
! "New drinking water genome catalog identifies a globally distributed bacterial genus adapted to disinfected drinking water systems." Check it out.
www.biorxiv.org/content/10.1...
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New drinking water genome catalog identifies a globally distributed bacterial genus adapted to disinfected drinking water systems.
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
https://www.biorxiv.org/content/10.1101/2024.05.22.595307v1
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Marco Gabrielli
Simon Roux
over 1 year ago
VEGA conferences are great and unique opportunities (in my unbiased opinion) to get a sense for some of the latest viral ecogenomics research. This one will have a day 1 dedicated to "Viromics measurement", and day 2 around "virus-host interactions" and "atypical viruses
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Marco Gabrielli
Frederik Hammes 🇨🇭🇿🇦
over 1 year ago
New preprint from our group just dropped in bioRxiv! Alessio
@alecava.bsky.social
investigated the impact of two common DNA extraction methods on microbial community analysis in general and specifically on Legionella quantification. 🦠🧫
@mgabrielli.bsky.social
biorxiv.org/cgi/content/...
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Marco Gabrielli
Nicolas Mouquet
over 1 year ago
As director of CESAB, I'm incredibly proud to share the latest article of our postdocs today in Ecology Letters. 👏 They call for a more ethical academic publishing landscape but also ask to not let only the Early Career Researchers pay the price of this paradigm shift !
doi.org/10.1111/ele....
🧪🌍
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Last 48 hours for early career researchers to apply to the Legionella symposium at @EawagResearch ! 🦠🔬🏘️ Prepare for lots of good science and heated workshops discussions 🔥 Link:
bit.ly/LeCo_Symp
add a skeleton here at some point
over 1 year ago
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📣 Second announcement 📣 Come to Eawag to present your research and discuss with international researchers the state of Legionella research and future research directions! 🦠🔬 Travel and childcare grants available! Link:
bit.ly/LeCo_Symp
Deadline: 15 March
over 1 year ago
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Marco Gabrielli
Kimberly Kline 🏔
over 1 year ago
PhD student opening! We are collaborating with the team of David Johnson @EawagResearch to understand E. faecalis polymicrobial community assembly, interactions, and consequences for AMR and infection. Details of the position and how to apply can be found here:
tinyurl.com/ywa52a6a
.
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A great opportunity for all interested in Legionella and the microbiology of building plumbing systems🦠🏘️! Prepare for discussion on epidemiology, ecology and beyond!!
#MicroSky
add a skeleton here at some point
over 1 year ago
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Marco Gabrielli
Marco Mauri
over 1 year ago
The Population Dynamics Virtual Seminars has a new home
sites.google.com/view/popdyn/
Check the webpage and get informed on the 2024 speaker's list!
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Marco Gabrielli
bioRxiv Microbiology
over 1 year ago
Metatranscriptomic analysis reveals synergistic activities of comammox and anammox bacteria in full-scale attached growth nitrogen removal system. https://www.biorxiv.org/content/10.1101/2024.01.08.574720v1
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Metatranscriptomic analysis reveals synergistic activities of comammox and anammox bacteria in full-scale attached growth nitrogen removal system. https://www.biorxiv.org/content/10.1101/2024.01.08.574720v1
Leveraging comammox Nitrospira and anammox bacteria for shortcut nitrogen removal can drastically lo
https://www.biorxiv.org/content/10.1101/2024.01.08.574720v1
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Marco Gabrielli
Cameron Thrash
almost 2 years ago
Eukfinder: a pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data.
www.biorxiv.org/content/10.1...
#jcampubs
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Eukfinder: a pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data.
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
https://www.biorxiv.org/content/10.1101/2023.12.28.573569v1
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Marco Gabrielli
Ákos T Kovács
almost 2 years ago
Nine (not so simple) steps: a practical guide to using machine learning in microbial ecology👇🏼
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Marco Gabrielli
Pedro Leão
almost 2 years ago
📢Listen up Microbial Ecology nerds! 🤓
#ISME19
Abstract submission deadline is February 2nd if you want to be considered for an oral or poster presentation! We want to see and hear from you in Cape Town from August 18-23 next year!
isme19.isme-microbes.org/isme19-abstr...
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Abstract Submission | ISME
https://isme19.isme-microbes.org/isme19-abstract-submission
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Marco Gabrielli
Eduardo Rocha
almost 2 years ago
New postdoc position in our lab for a project led by Marie Touchon (bioinformatics) and with O Tenaillon (experiments) on the evolution and dynamics of microbial genomes to understand their diversification by gene flow. Check
research.pasteur.fr/en/job/postd...
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Marco Gabrielli
Sara Mitri
almost 2 years ago
Our department is recruiting a tenure-track Assistant Professor on microbial interactions linked to the NCCR Microbiomes
nccr-microbiomes.ch
Don't miss this opportunity to join a friendly, dynamic department in a city with hard-to-beat quality of life. Apply
tinyurl.com/4k2mevax
by Jan 31!
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Marco Gabrielli
Katrina Velle
almost 2 years ago
I am actively recruiting students for my lab at UMass Dartmouth! Are you interested in a project on actin, amoebae, cell migration, and/or pathogenesis? Send me an email & apply to the Integrative Biology PhD program by Jan 15! Please RT More info:
katrinavelle.wixsite.com/science
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Home | Katrina B Velle, PhD
I'm Katrina Velle, a cell biologist interested in actin-driven phenotypes and microbial pathogenesis. As a postdoc, I am investigating the contributions of the actin cytoskeleton to phenotypes in Naeg...
https://katrinavelle.wixsite.com/science
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Marco Gabrielli
Ameet Pinto
almost 2 years ago
Looking to recruit 3 grad researchers. (1) Drinking water micro-ecology, (2) Nitrogen micro (specifically comammox), and (3) Algal micro + imaging. as Spring 2024 & late as Fall 2024. if you know someone creative + motivated + interested in these topics - would appreciate u sharing this with them.
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Marco Gabrielli
Cameron Thrash
almost 2 years ago
Eukaryotic genomes from a global metagenomic data set illuminate trophic modes and biogeography of ocean plankton
journals.asm.org/doi/full/10....
#jcampubs
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Eukaryotic genomes from a global metagenomic data set illuminate trophic modes and biogeography of o...
Single-celled eukaryotes play ecologically significant roles in the marine environment, yet fundamental questions about their biodiversity, ecological function, and interactions remain. Environmental ...
https://journals.asm.org/doi/full/10.1128/mbio.01676-23?af=R
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Marco Gabrielli
Chenxin Li, PhD
almost 2 years ago
Not enough people know about
bioicons.com
Open source vector graphics. Free alternatives to BioRender.
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