#mbkceesme2025 🇬🇷 already mingling @mikrobiokosmos.bsky.social

Congrats to ALL #EESMicrobiome poster prize winners! Our lab member ✨ Gabriel Baldanzi ✨ won the prize with his poster on gut microbiome signature of type 2 diabetes in 3,692 cases and >200,000 controls.

☀️ It’s a sunny day at 'The human microbiome' symposium and the vibes are just right 😎 #EESMicrobiome Nothing beats enjoying lunch outdoors, soaking up the late summer sun, and catching up with colleagues between sessions 🌿🍴

Such an engaged audience at #EESMicrobiome with lots of great questions after my talk! Big thanks to the organisers for inviting me to present some of the teams recent early life #microbiome work. Conference has been AMAZING so far!

☀️ Good morning from Day 3 of #EESMicrobiome 🦠 ☕🥨 Fuelled by coffee and pretzels, we’re starting strong with Session 4: Microbiome–host interactions in health and disease. 🎤 'Understanding gut-to-host communication to prevent cardiovascular disease' by @fzmarques.bsky.social (Monash University)

TODAY at #EESMicrobiome

TODAY at #EESMicrobiome

Day 2 of the The human Microbiome conference #EESMicrobiome - Our editor Dr. Ruby Ponnudurai @rubyponnudurai.bsky.social is on the Meet the Editor panel today at lunch. Get in touch with her to know more about @reviewcommons.org. The human microbiome www.embl.org/about/info/c...

Our scientific organisers opened ‘The human microbiome’ symposium by giving us a brief update on their most recent work 🦠 #EESMicrobiome 🔹Mani Arumugam, University of Copenhagen 🔹Ami Bhatt, Stanford University School of Medicine 🔹Peer Bork, EMBL Heidelberg 🔹Nicola Segata, University of Trento

NEXT WEEK -> #mbkceesme2025 🇬🇷 Drop me a line if you want to chat over ☕ about open science and open source: #BugSigDB #curatedMetagenomicData @microbiomevif.bsky.social #Outreachy @nsurp.bsky.social #microbiomedigest 👋 @mikrobiokosmos.bsky.social

See you at #EESMicrobiome in Heidelberg🇩🇪

On Thursday, 18 Sept. Flash talk (ft) session 2 (16:30 -17:10) and Poster (p) session 2 (17:10 – 19:10) ✨ Gabriel Baldanzi ✨ Gianmarco Piccinno ✨ @cengoni.bsky.social will present our latest findings! Looking forward to sharing #microbiome science! 3/3

On Wednesday, 17 Sept. from 16h don't miss Flash talk (ft) session 1 and Poster (p) session 1 and meet our lab members: ✨ @fackelmeister.bsky.social ✨ @vheidrich.bsky.social 2/3

#GloMiNe recordings now available!! @cassyni.bsky.social ▶️ cassyni.com/s/mvif-glomi... YouTube ▶️ www.youtube.com/playlist?lis... @microbiotavault.bsky.social #MVIF Thanks @tosina.bsky.social for putting all up.

#MVIF Season 5 has started! Check out the program and feel free to join the keynotes by presenting your work–abstract submission is open: www.microbiome-vif.org/en-US/-/info...

See you at #EESMicrobiome in Heidelberg🇩🇪

NEXT WEEK we are at #EESMicrobiome in Heidelberg @events.embl.org Full program: www.embl.org/about/info/c... On Tuesday, 16 Sept. see you at Session 1 from 15:30 ✨Liviana Ricci will give a talk "Microbial strain transmission between infants in nurseries drives gut microbiome development" 1/3

NEXT WEEK we are at #EESMicrobiome in Heidelberg @events.embl.org Full program: www.embl.org/about/info/c... On Tuesday, 16 Sept. see you at Session 1 from 15:30 ✨Liviana Ricci will give a talk "Microbial strain transmission between infants in nurseries drives gut microbiome development" 1/3

June #MVIF updated! @julesdeep.bsky.social

#MeetTheSpeakers 🎤Gloria Dominguez-Bello will open #GloMiNe2025 in Atlantic & Pacific events, both LIVE! Youzheng Teo and Anton Lavrinienko in the Atlantic event, Adrian Egli in the Pacific event will introduce the @microbiotavault.bsky.social initiative More info👇 cassyni.com/s/mvif-glomi... 1/n

👋 Season 5 program is coming soon! Follow #MVIF NEWS here and 👉 www.microbiome-vif.org/en-US

Check out our latest publication where we performed AMR screening in ~2000 metagenomes from food and production surfaces in Europe. >60% samples carrying ARGs, >70% of all ARG found, and critical role of non-ESKAPEE from surfaces of the latest stages of production over the final products’ resistome!

We're happy to welcome @nmquijada.bsky.social to our lab as a visiting researcher! Narciso is a researcher from Instituto de Biología Funcional y Genómica (IBFG) who investigates food microbiome and resistome as well as contributes to bioinformatics efforts in the field github.com/nmquijada

Our lab member @amirn.bsky.social will be attending the @femsmicro.org conference in Milan 🇮🇹 next week. Feel free to connect or meet up at the #FEMS2025! If you miss the talk on Wednesday (details ⬇️) you can check out the poster with ID Number: wed_2.1_519_S

Our lab member @amirn.bsky.social will be attending the @femsmicro.org conference in Milan 🇮🇹 next week. Feel free to connect or meet up at the #FEMS2025! If you miss the talk on Wednesday (details ⬇️) you can check out the poster with ID Number: wed_2.1_519_S

Highly recommended!

🧬🖥️ Postdoc positions available SOON!! Looking for researchers with strong computational skills (programming essential) to work on microbiome & phylogenetics projects. 📅 Start on Nov 1, 2025 (flexible) 📍 Trento, Italy DM me for details or share! #postdocjobs #microbiome #metagenomics #phylogenetics

Francesco is building a team 🥁 He is an open minded researcher with expertise in human microbiome and bioinformatics. Plus I am pretty sure you will enjoy chatting with him about future projects and your potential contribution!!

A Step-by-Step Guide to Publishing a BugSigDB Study by @toriaburah.bsky.social #outreachy @bioconductor.bsky.social burah.hashnode.dev/step-by-step...

We're happy to welcome Karlijn Johanna Van Dijk to our lab as a visiting researcher! Karlijn is a PhD student from #UniversityofStavanger who investigates human gut microbiome in oncology. www.uis.no/en/profile/4...

📥 You have only until 24 June to submit your abstract for 'The human microbiome'❗ 🔬💊 Explore cutting-edge breakthroughs in #microbiome research, from methodological innovations to integrative approaches and personalised therapeutics. Join #EESMicrobiome 🦠🔍 ➡️ https://s.embl.org/ees25-08-bl

The new version of MetaPhlAn v4.2.2 released! 📌taxonomic profiling of long-read metagenomes for the first time 📌new version of the MetaPhlAn db (vJan25_202503) containing >21k new SGBs Try it out & @hutlab.bsky.social and we are looking forward to your feedback! forum.biobakery.org/t/metaphlan-...

Very excited to see the long-read #microbiome profiling feature included in this tool! I'll be taking a look at #PacBio HiFi performance in the near future.

The new version of MetaPhlAn v4.2.2 released! 📌taxonomic profiling of long-read metagenomes for the first time 📌new version of the MetaPhlAn db (vJan25_202503) containing >21k new SGBs Try it out & @hutlab.bsky.social and we are looking forward to your feedback! forum.biobakery.org/t/metaphlan-...

Today I went to my daughter’s childcare to talk to the toddlers about heart health and gut microbes ❤️ They were very excited to tell me about their fav fruits and veggies Big thanks to @cibiocm.bsky.social for the toy microbes 🦠🙏 @monashuniversity.bsky.social

Join us at #EESMicrobiome! Organisers Mani Arumugam (#uni_copenhagen), Ami Bhatt (@stanfordpress.bsky.social), Peer Bork (@borklab.bsky.social) and Nicola Segata (#CIBIO_UniTrento) look forward to welcoming #microbiome scientists in September at @embl.org! @events.embl.org

In this study just published at the Journal of Clinical Periodontology - a collaboration between @cibiocm.bsky.social and PreBiomics - we evaluated the microbiome of dental implants using metagenomic sequencing onlinelibrary.wiley.com/doi/10.1111/...

Join us at #EESMicrobiome! Organisers Mani Arumugam (#uni_copenhagen), Ami Bhatt (@stanfordpress.bsky.social), Peer Bork (@borklab.bsky.social) and Nicola Segata (#CIBIO_UniTrento) look forward to welcoming #microbiome scientists in September at @embl.org! @events.embl.org

🥁NEW: our latest collaboration with PreBiomics on plaque microbiome is OUT! This manuscript was the winner of the third 2025 Jaccard - EFP Prize in Periodontology. Check out 🧵⬇️

🥁NEW: our latest collaboration with PreBiomics on plaque microbiome is OUT! This manuscript was the winner of the third 2025 Jaccard - EFP Prize in Periodontology. Check out 🧵⬇️

Let us introduce a new subspecies: ✨Catenibacterium mitsuokai subsp. tridentinum✨ Plus, we also propose a taxonomic reclassification of publicly available reference genomes belonging to the C. mitsuokai sp. More details ⬇️ www.microbiologyresearch.org/content/jour...

Let us introduce a new subspecies: ✨Catenibacterium mitsuokai subsp. tridentinum✨ Plus, we also propose a taxonomic reclassification of publicly available reference genomes belonging to the C. mitsuokai sp. More details ⬇️ www.microbiologyresearch.org/content/jour...

🥁NEW publication from our lab: the largest meta-analysis of gut microbiome associations with CRC! www.nature.com/articles/s41... 🧵⬇️ 1/6

🥁NEW publication from our lab: the largest meta-analysis of gut microbiome associations with CRC! www.nature.com/articles/s41... 🧵⬇️ 1/6

. @marconiroberta.bsky.social is attending and presenting at the upcoming GUT MICROBIOLOGY SYMPOSIUM gutmicrobiology-2025.symposium.inrae.fr Her talk is about our latest cultivation efforts. It will be on Tuesday at 17:15. Come say HI and discuss ☕️ and gut microbiome with Roberta!

. @marconiroberta.bsky.social is attending and presenting at the upcoming GUT MICROBIOLOGY SYMPOSIUM gutmicrobiology-2025.symposium.inrae.fr Her talk is about our latest cultivation efforts. It will be on Tuesday at 17:15. Come say HI and discuss ☕️ and gut microbiome with Roberta!

There is still time to apply for #PhD studentships with us! Thanks for spreading the word. #phdchat #phdlife #academiclife

There is still time to apply for #PhD studentships with us! Thanks for spreading the word. #phdchat #phdlife #academiclife

🥁 NEW: Commentary in @cellcellpress.bsky.social! by @msabrysarhan.bsky.social Giacomo Antonello @whansi.bsky.social @cengoni.bsky.social @dmascalzoni.bsky.social @leviwaldron1.bsky.social Nicola Segata, Christian Fuchsberger www.cell.com/cell/fulltex... 1/4

We are looking forward to this Wednesday! #UniTrentoCIBIO Happy Hour PLUS the internal seminar by our lab member Gianmarco Piccinno on the human gut microbiome in oncology!