Cameron Thrash
@jcamthrash.bsky.social
📤 6209
📥 1729
📝 5615
Professor, USC Marine and Environmental Biology, microbe hunter. he/him. Not a bot. thethrashlab.com
Sediment trap preservative choice impacts particle‐associated microbial community composition
aslopubs.onlinelibrary.wiley.com/doi/10.1002/...
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https://aslopubs.onlinelibrary.wiley.com/doi/10.1002/lom3.70026?af=R
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Rhythms of lysis: Viral regulation of prokaryotic turnover across diel cycles
aslopubs.onlinelibrary.wiley.com/doi/10.1002/...
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https://aslopubs.onlinelibrary.wiley.com/doi/10.1002/lol2.70097?af=R
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From microscale to microbial insights: validating high-throughput microvolume extraction (HiMEx) methods for marine microbial ecology
academic.oup.com/ismecommun/a...
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From microscale to microbial insights: validating high-throughput microvolume extraction (HiMEx) methods for marine microbial ecology
Abstract. Extracting and directly amplifying DNA from small-volume, low-biomass samples would enable rapid, ultra-high-throughput analyses, facilitating th
https://academic.oup.com/ismecommun/article/5/1/ycaf218/8342219
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AI-empowered super-resolution microscopy: a revolution in nanoscale cellular imaging
www.nature.com/articles/s41...
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AI-empowered super-resolution microscopy: a revolution in nanoscale cellular imaging - Nature Methods
This Review provides a comprehensive discussion of how methods in machine learning and computer vision have been used to improve super-resolution microscopy to gain insights into subcellular biology.
https://www.nature.com/articles/s41592-025-02871-4
1 day ago
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100 Years of Soil Organic Matter Priming Research
onlinelibrary.wiley.com/doi/10.1111/...
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100 Years of Soil Organic Matter Priming Research
Since the first identification of soil organic matter (SOM) priming by Löhnis in 1926, priming effect (PE) has emerged as a key mechanism regulating soil carbon (C) turnover, yet its magnitude, drive...
https://onlinelibrary.wiley.com/doi/10.1111/gcb.70674?af=R
1 day ago
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The Role of Fe(II) Minerals in Carbon Stabilization in Coastal and Estuarine Anoxic Environments
agupubs.onlinelibrary.wiley.com/doi/10.1029/...
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Troubleshooting common errors in assemblies of long-read metagenomes
www.nature.com/articles/s41...
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Troubleshooting common errors in assemblies of long-read metagenomes - Nature Biotechnology
Long-read sequence assemblies from metagenomes contain frequent errors.
https://www.nature.com/articles/s41587-025-02971-8
1 day ago
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Rapid and Consistent Genome Clustering for Navigating Bacterial Diversity with Millions of MAGs and Isolates
www.biorxiv.org/content/10.6...
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3 days ago
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Modeling assembly dynamics and stability of microbial communities
www.biorxiv.org/content/10.6...
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3 days ago
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Out of Antarctica: new insights into Antarctic Subcluster 5.2 picocyanobacteria based on high-quality genomes
www.biorxiv.org/content/10.6...
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3 days ago
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Molecular evidence for depth‐dependent microbial transformation of dissolved organic matter into carboxyl‐rich alicyclic molecules in coastal marginal seas
aslopubs.onlinelibrary.wiley.com/doi/10.1002/...
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3 days ago
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Draft genomes of three abundant bacterial isolates from hypersaline Don Juan Pond, Antarctica
journals.asm.org/doi/full/10....
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4 days ago
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Persistent virulent phages exist across bacterial isolates
www.nature.com/articles/s41...
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Persistent virulent phages exist across bacterial isolates - Nature Microbiology
The long-term existence of diverse virulent phages within cultures of Escherichia coli and others challenges the virulent–temperate dichotomy and points to non-canonical phage lifestyles.
https://www.nature.com/articles/s41564-025-02207-0
4 days ago
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Large-scale analysis of bacterial genomes reveals thousands of lytic phages
www.nature.com/articles/s41...
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Large-scale analysis of bacterial genomes reveals thousands of lytic phages - Nature Microbiology
Diverse genomes of lytic phages are found in bacterial assemblies, challenging assumptions about the nature of the lytic lifestyle.
https://www.nature.com/articles/s41564-025-02203-4
4 days ago
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RAMBO: Resolving Amplicons in Mixed Samples for Accurate DNA Barcoding with Oxford Nanopore
www.biorxiv.org/content/10.6...
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4 days ago
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Unraveling Candidatus Dermatophostum as a Novel Genus of Polyphosphate-Accumulating Organisms for High-Strength Wastewater Treatment
www.biorxiv.org/content/10.6...
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4 days ago
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Temperature alters interactions and keystone taxa in the marine microbiome
academic.oup.com/ismej/advanc...
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4 days ago
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The ecology of carbon sequestration in coastal upwelling ecosystems
www.biorxiv.org/content/10.6...
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The ecology of carbon sequestration in coastal upwelling ecosystems
The biological carbon pump (BCP) transports carbon fixed by phytoplankton into the deep ocean via multiple pathways and leads to net carbon dioxide sequestration. The BCP is very active in highly prod...
https://www.biorxiv.org/content/10.64898/2025.12.29.696936v1?rss=1
4 days ago
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Comparative genomics reveals the molecular basis for divergent algicidal strategies in two Alteromonas macleodii strains
journals.asm.org/doi/full/10....
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5 days ago
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On-site microbial community analysis in rivers: integrating autonomous sampling with a portable sequencing workflow
www.biorxiv.org/content/10.6...
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5 days ago
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The Two Frontiers Project Field Handbook and OpenTools: Standardizing microbial fieldwork for biobank-scale sequencing and culturomics
www.biorxiv.org/content/10.6...
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5 days ago
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Discovery of a chemosynthetic community at the serpentinite-hosted seep on the Quaker Seamount, Mariana Forearc
www.biorxiv.org/content/10.6...
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5 days ago
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The geometry of cooperation: decoding microbial interactions
www.biorxiv.org/content/10.6...
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5 days ago
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Challenges, adaptations, and biotechnological potential of oligophilic bacteria
link.springer.com/article/10.1...
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5 days ago
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Interactions with bacteria shape diatom adaptation to carbon concentration changes
www.nature.com/articles/s41...
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Interactions with bacteria shape diatom adaptation to carbon concentration changes - Nature Communications
Diatoms are key marine primary producers and establish intricate partnerships with bacteria. Bacterium Loktanella enables diatoms to indirectly utilize glucose and maintains their photoautotrophic met...
https://www.nature.com/articles/s41467-025-68050-3
5 days ago
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reposted by
Cameron Thrash
Jeffrey Mervis
6 days ago
The National Science Foundation starts 2026 with a new management structure that affects every scientist with--or applying for--NSF funding. Here's what you need to know.
www.science.org/content/arti...
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The National Science Foundation just had a big reorganization. Here are five things to know
Divisions and rotators disappear as more career staff become supervisors
https://www.science.org/content/article/national-science-foundation-just-had-big-reorganization-here-are-five-things-know
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Ultrasmall episymbiont Nanosynbacter lyticus employs multiple ATP-generating metabolic pathways during horizontal transmission
academic.oup.com/ismej/advanc...
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5 days ago
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Coordination of chromosome segregation and cell division in the archaeon Sulfolobus acidocaldarius
www.nature.com/articles/s41...
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Coordination of chromosome segregation and cell division in the archaeon Sulfolobus acidocaldarius - Nature Communications
Very little is known about the molecular basis of chromosome segregation in archaea. Here, the authors describe conformational changes in the chromosome during the cell cycle of the archaeon Sulfolobu...
https://www.nature.com/articles/s41467-025-67934-8
10 days ago
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Genomic insights into a versatile deep-sea methanotroph constituting the rare biosphere of a Brazilian carbonate mound complex
journals.asm.org/doi/full/10....
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10 days ago
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Metagenomics reveals potential interactions between Patescibacteriota and their phages in groundwater ecosystems
journals.asm.org/doi/full/10....
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10 days ago
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The glycine betaine-cobalamin feedback loop drives cross-feeding between marine bacteria and algae
www.biorxiv.org/content/10.6...
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10 days ago
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Virus community response rewires methane-suppressed peat microcosm carbon metabolism
www.biorxiv.org/content/10.6...
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10 days ago
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Global geography outweighs long-term dynamics in shaping marine microbial population structure
www.biorxiv.org/content/10.6...
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10 days ago
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epsSMASH uncovers exopolysaccharide biosynthetic gene clusters in environmental and human microbiomes
www.biorxiv.org/content/10.6...
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10 days ago
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The changing roles of Escherichia coli
www.nature.com/articles/s41...
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The changing roles of Escherichia coli - Nature Microbiology
Richard Lenski traces the legacy of Escherichia coli and how science is evolving to use this model organism in new ways.
https://www.nature.com/articles/s41564-025-02230-1
10 days ago
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Reconstruction of 2,965 Microbial Genomes from Mangrove Sediments across Guangxi, China
www.nature.com/articles/s41...
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Reconstruction of 2,965 Microbial Genomes from Mangrove Sediments across Guangxi, China - Scientific Data
Scientific Data - Reconstruction of 2,965 Microbial Genomes from Mangrove Sediments across Guangxi, China
https://www.nature.com/articles/s41597-025-06438-y
10 days ago
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Deep metatranscriptomic sequencing data of wastewater from Los Angeles, USA, 2023–2024
www.nature.com/articles/s41...
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Deep metatranscriptomic sequencing data of wastewater from Los Angeles, USA, 2023–2024 - Scientific Data
Scientific Data - Deep metatranscriptomic sequencing data of wastewater from Los Angeles, USA, 2023–2024
https://www.nature.com/articles/s41597-025-06475-7
10 days ago
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Eukaryotic Recombinases Duplicated After Divergence From Known Asgard Archaeal RadA: Implications for the Evolution of Sex During Eukaryogenesis
academic.oup.com/gbe/article/...
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Eukaryotic Recombinases Duplicated After Divergence From Known Asgard Archaeal RadA: Implications for the Evolution of Sex During Eukaryogenesis
Abstract. The origin of meiotic sex was a key milestone in the evolution of the eukaryotic cell. The paralogous DNA recombinases Rad51 and meiosis-specific
https://academic.oup.com/gbe/article/17/12/evaf240/8402114?login=false
10 days ago
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Phylogenetic and functional characterization of Asgard primases
academic.oup.com/mbe/advance-...
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10 days ago
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Resolving the changing pace of Arctic rivers
www.nature.com/articles/s41...
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Resolving the changing pace of Arctic rivers - Nature Climate Change
Whether rivers are speeding up or slowing down in a warming Arctic is unclear, but has implications for carbon cycling and infrastructure. This study finds divergent behaviour in migration rates for r...
https://www.nature.com/articles/s41558-025-02512-w
10 days ago
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Carbon cycle system and origin of organic molecules in subseafloor serpentinized rocks of the Atlantis Massif (Mid-Atlantic Ridge, 30°N) oceanic core complex
www.sciencedirect.com/science/arti...
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Carbon cycle system and origin of organic molecules in subseafloor serpentinized rocks of the Atlantis Massif (Mid-Atlantic Ridge, 30°N) oceanic core complex
The Atlantis Massif (Mid-Atlantic Ridge, 30°N) provides a natural laboratory in the deep ocean for understanding the links among the hydrothermal syst…
https://www.sciencedirect.com/science/article/abs/pii/S0967063725002018?dgcid=rss_sd_all
10 days ago
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Chemosynthesis enables microbial communities to flourish in a marine cave ecosystem
academic.oup.com/ismej/advanc...
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10 days ago
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Urea-driven nitrification contributes to N2O production in the oligotrophic euphotic ocean
academic.oup.com/ismej/advanc...
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10 days ago
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Persister Cells Form Based on Low Ribosome Content
www.biorxiv.org/content/10.6...
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10 days ago
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BioGeoFormer: A deep learning approach to classify unknown genes associated with critical biogeochemical cycles
www.biorxiv.org/content/10.6...
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10 days ago
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Isolation of Crenothrix bacteria reveals the distinct ecophysiologies of filamentous methanotrophs and adaptations to redox stress
www.biorxiv.org/content/10.6...
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10 days ago
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The redefined role of PhaG and CoA ligases in medium-chain-length 3-hydroxy acid and polyhydroxyalkanoate production in Pseudomonas putida
www.biorxiv.org/content/10.6...
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10 days ago
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Beyond magnetosomes: ubiquitous and diverse intracellular inclusions expand the role of magnetotactic bacteria in biogeochemical cycling
www.biorxiv.org/content/10.6...
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10 days ago
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Extraordinary claims require extraordinary evidence: evaluating nodule-associated dark oxygen production
www.frontiersin.org/journals/mar...
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10 days ago
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Machine learning enables scalable and systematic hierarchical virus taxonomy
www.nature.com/articles/s41...
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Machine learning enables scalable and systematic hierarchical virus taxonomy - Nature Biotechnology
vConTACT3 enables multirank, large-scale classification of eukaryotic and prokaryotic viruses.
https://www.nature.com/articles/s41587-025-02946-9
10 days ago
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