Today’s dive we start around 2pm central, and will be exploring where I think there’s a canyon that has not been sampled. I expect it to be very exciting! www.youtube.com/@SchmidtOcean #AsgardArchaea @schmidtocean.bsky.social @moorefound.bsky.social @texasscience.bsky.social @utmsi.bsky.social

Sampling is underway! #AsgardArchaea @schmidtocean.bsky.social @moorefound.bsky.social @texasscience.bsky.social @utmsi.bsky.social

An optimized flow cytometry sorting-sequencing workflow reduces storage, sorting and extraction bias in sorted microbial communities www.biorxiv.org/content/10.1... #jcampubs

The role of biological nitrogen fixation in polyhydroxybutyrate production from methane by methane-oxidizing bacteria: a review of metabolic routes and yield enhancement www.frontiersin.org/journals/mic... #jcampubs

Conserved genetic markers reveal widespread diatom sexual reproduction in the global ocean www.nature.com/articles/s41... #jcampubs 🌊

Factors influencing the spatial distributions of river microbial communities at the watershed scale: a case study involving the Wuding River Basin www.frontiersin.org/journals/mic... #jcampubs

Metagenomic editing of commensal bacteria in vivo using CRISPR-associated transposases www.science.org/doi/abs/10.1... #jcampubs

DNA viral community enhances microbial carbon fixation capacity via auxiliary metabolic genes in contaminated soils www.nature.com/articles/s41... #jcampubs

Key role of hydrogen in regulating hydrogenases and the reductive TCA cycle in a thermophilic, autotrophic sulfur-reducing bacterium journals.asm.org/doi/full/10.... #jcampubs

Augmenting microbial phylogenomic signal with tailored marker gene sets www.nature.com/articles/s41... #jcampubs

Viral NblA proteins negatively affect oceanic cyanobacterial photosynthesis www.nature.com/articles/s41... #jcampubs 🌊

Deep-branching magnetotactic bacteria form intracellular carbonates enriched in trace metals journals.asm.org/doi/full/10.... #jcampubs

Bioplastic Production Potential of Azospira suillum PS: Growth-Associated PHB Production Under Aerobic and Anaerobic Conditions www.biorxiv.org/content/10.1... #jcampubs

Chemical richness and diversity of uncultivated ‘Entotheonella’ symbionts in marine sponges www.nature.com/articles/s41... #jcampubs

Nitrite accumulation in marine oxygen minimum zones induced by microbial nitrite consumers www.nature.com/articles/s41... #jcampubs 🌊

Bin Chicken: targeted metagenomic coassembly for the efficient recovery of novel genomes www.nature.com/articles/s41... #jcampubs

Assembly, architecture and functional roles of microbial surface layers www.nature.com/articles/s41... #jcampubs

Deep-sea corals near cold seeps associate with sulfur-oxidizing chemoautotrophs in the family Ca. Thioglobaceae microbiomejournal.biomedcentral.com/articles/10.... #jcampubs

Introgression impacts the evolution of bacteria, but species borders are rarely fuzzy www.nature.com/articles/s41... #jcampubs

Job Opening **ASSISTANT PROFESSOR MARINE ECOLOGY**, Department of Biological Sciences, University of Rhode Island. jobs.uri.edu/postings/15960

Decoding emergent properties of microbial community functions through subcommunity observations and interpretable machine learning academic.oup.com/ismej/articl... #jcampubs

Plastic degradation by enzymes from uncultured deep sea microorganisms academic.oup.com/ismej/articl... #jcampubs

Metagenomes and Metagenome-Assembled Genomes from Microbial Communities in a Biological Nutrient Removal Plant Operated at Los Angeles County Sanitation District (LACSD) with High and Low Dissolved Oxygen Conditions www.biorxiv.org/content/10.1... #jcampubs

Fluorescein-based dyes are not valid reporters of oxidative stress in bacteria, and conclusions based on their use must be reconsidered www.pnas.org/doi/abs/10.1... #jcampubs

Marine Bacterioplankton Composition Predicts Oxygen Consumption During Dissolved Organic Matter Degradation Experiments enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/... #jcampubs 🌊

Quantifying microbial interactions based on compositional data using an iterative approach for solving generalized Lotka-Volterra equations journals.plos.org/ploscompbiol... #jcampubs

Strain displacement in microbiomes via ecological competition www.nature.com/articles/s41... #jcampubs

Reciprocal transplantation experiments reveal local adaptation of seaweed-associated bacteria academic.oup.com/ismecommun/a... #jcampubs

Spatiotemporal and temperature-dependent disconnect between ammonia oxidation and dark DIC fixation in deep oligotrophic Lake Constance academic.oup.com/ismecommun/a... #jcampubs

A century of research on Planctomycetota bacterial phylum, previously known as Planctomycetes academic.oup.com/femsre/advan... #jcampubs

Phytoplankton Under Pressure: Temperature, Precipitation and Cyanobacterial Blooms as Drivers of Chytrid Infections enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/... #jcampubs

The Hidden Viral Network: How Viruses Shape Microbial Adaptability and Biogeochemical Cycling in the Polyextreme Mars‐Analog Qaidam Basin Desert enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/... #jcampubs

The cell envelope of diderm bacteria: a unified scaffold, not a stack of layers www.sciencedirect.com/science/arti... #jcampubs

Spontaneous evolution of heterotrophy in cultured dinoflagellate algae www.sciencedirect.com/science/arti... #jcampubs

Carbon monoxide-driven proton respiration enables facultative anaerobes to survive electron acceptor limitation www.biorxiv.org/content/10.1... #jcampubs

Facilitation-competition tradeoffs structure microbial niches and nitrogen cycling www.biorxiv.org/content/10.1... #jcampubs

Microcompartments in Hodarchaeales: a bioenergetic engine that could have fuelled eukaryogenesis www.biorxiv.org/content/10.1... #jcampubs

PGAP2: A comprehensive toolkit for prokaryotic pan-genome analysis based on fine-grained feature networks www.nature.com/articles/s41... #jcampubs

Multifunctionally diverse alkaline phosphatases of Alteromonas drive the phosphorus cycle in the ocean www.nature.com/articles/s41... #jcampubs 🌊

Increased mutation rates and diversity are dominant features of Geobacter multiheme cytochromes www.biorxiv.org/content/10.1... #jcampubs

Metabolic Potential of Candidatus Saccharimonadia Including Rare Lineages in Activated Sludge enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/... #jcampubs

River metabolism in the contiguous United States: A West of extremes www.science.org/doi/10.1126/... #jcampubs

Methanogenic archaea encoding Pyrrolysine maintain ambiguous amber codon usage www.pnas.org/doi/10.1073/... #jcampubs

New chemicals fuel the evolution of microbial biodegradation journals.asm.org/doi/abs/10.1... #jcampubs

Depth-resolved paired metagenomes and metatranscriptomes from the Lake Erie ‘dead zone’ journals.asm.org/doi/full/10.... #jcampubs

Inferring absolute counts from proportions by constraining multivariate normal distributions www.biorxiv.org/content/10.1... #jcampubs

Characterization of Phytoplankton-Excreted Metabolites Mediating Carbon Flux through the Surface Ocean www.biorxiv.org/content/10.1... #jcampubs 🌊

Single-particle genomics uncovers abundant non-canonical marine viruses from nanolitre volumes www.nature.com/articles/s41... #jcampubs

Bacteria sense virus-induced genome degradation via methylated mononucleotides www.biorxiv.org/content/10.1... #jcampubs

Tracing the contribution of dust origins on deposition and phytoplankton carbon uptake in global oceans bg.copernicus.org/articles/22/... #jcampubs 🌊