Raphael Ferreira
@f-raphael.bsky.social
📤 146
📥 228
📝 1
Postdoctoral researcher @harvardmed
Our work on nucleic acid sensing in live human cells is out 🧬⚫️🟢! preprint:
www.biorxiv.org/content/10.1...
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8 months ago
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reposted by
Raphael Ferreira
Leopold Parts
9 months ago
We're hiring to expand on the work to understand the human genome by engineering it!
lnkd.in/da-gitNc
add a skeleton here at some point
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reposted by
Raphael Ferreira
Luciano A. Masullo
9 months ago
ÅNGSTRÖM-RESOLUTION IMAGING OF CELL-SURFACE GLYCANS 🧬🎨🍬 The glycocalyx, our cells' sugar coat, holds secrets in immunology, cancer, viral infections, and more. Visualizing its molecular architecture was impossible… until now.
#glycotime
#microscopy
www.biorxiv.org/content/10.1...
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reposted by
Raphael Ferreira
Romain Koszul
9 months ago
Our latest work: how can compartmentalization emerge in a eukaryotic genome lacking canonical heterochromatin? By investigating bacterial genomes put in yeast, we show that the presence or absence of transcription is sufficient!
#chromatin
#3Dgenome
#generegulation
www.science.org/doi/10.1126/...
👇
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Sequence-dependent activity and compartmentalization of foreign DNA in a eukaryotic nucleus
In eukaryotes, DNA-associated protein complexes coevolve with genomic sequences to orchestrate chromatin folding. We investigate the relationship between DNA sequence and the spontaneous loading and a...
https://www.science.org/doi/10.1126/science.adm9466
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reposted by
Raphael Ferreira
Di Jiang
9 months ago
🧬@science.org Randomizing the human genome by engineering recombination between repeat elements
bit.ly/4jyT4Hf
@jonaskoeppel.bsky.social
@f-raphael.bsky.social
@geochurch.bsky.social
@proftomellis.bsky.social
@leopoldparts.bsky.social
+al.
@sangerinstitute.bsky.social
@harvardmed.bsky.social
#synbio
add a skeleton here at some point
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reposted by
Raphael Ferreira
Di Jiang
9 months ago
@science.org
Genome recombination on demand | Science
www.science.org/doi/10.1126/...
a Perspective by
@seczmarta.bsky.social
Lars Steinmetz
@stanford.edu
on two studies
bit.ly/4hzFRMg
+
bit.ly/4jyT4Hf
that generate large genome rearrangements in mammalian cells @ unprecedented scale
#synbio
#genome
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Genome recombination on demand
Large genome rearrangements in mammalian cells can be generated at scale
https://www.science.org/doi/10.1126/science.adt0750
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reposted by
Raphael Ferreira
Leopold Parts
9 months ago
We're delighted to share our work on scrambling the human genome using prime editing, repetitive elements, and recombinases in
@science.org
, led by
@jonaskoeppel.bsky.social
,
@f-raphael.bsky.social
, with
@proftomellis.bsky.social
and George Church.
www.science.org/doi/10.1126/...
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Randomizing the human genome by engineering recombination between repeat elements
We lack tools to edit DNA sequences at scales necessary to study 99% of the human genome that is noncoding. To address this gap, we applied CRISPR prime editing to insert recombination handles into re...
https://www.science.org/doi/10.1126/science.ado3979
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reposted by
Raphael Ferreira
Leopold Parts
10 months ago
We are happy to share our enhancer scramble story, a strategy to create hundreds of stochastic deletions, inversions, and duplications within mammalian gene regulatory regions and associate these new architectures with gene expression levels 🧵
www.biorxiv.org/content/10.1...
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