My weekly newsletter is out! ramikrispin.substack.com/p/issue-67-t... #python #ai #llm

Excited to share "Claude Code for Everyone"—a set of step-by-step, hands-on tutorials to help you put AI to work on your laptop. It isn’t just an AI coding tool for developers; it is a powerful local AI agent to support research, writing, editing, and more. Check it out: gexijin.github.io/vibe/

Claude Code for Everyone The following tutorial by Prof. Steven Ge (@stevenge.bsky.social ) provides a step-by-step guide for setting up and working with Claude Code. This includes different routes by OS (Mac and Windows) and programming languages ( #Rstats and #Python). gexijin.github.io/vibe/

80-mer DNA aptamer as a selective marker for #Senescence Targeting EDA-Fibronectin Kd 500~1000 pM Label senescent cells in naturally aged🐭🫁 Aptamer binding ⬇️in 21-mo INK-ATTAC🐭 with p16 cells eliminated #Aging_Cell 2025 onlinelibrary.wiley.com/doi/10.1111/...

Excited to share "Claude Code for Everyone"—a set of step-by-step, hands-on tutorials to help you put AI to work on your laptop. It isn’t just an AI coding tool for developers; it is a powerful local AI agent to support research, writing, editing, and more. Check it out: gexijin.github.io/vibe/

Claude Code is more than coding. To prove it: here’s how I built ~100 tutorials in about a week by packaging my workflow into slash commands (reusable prompts)—write, review, and translate. It automates workflows. How I did it: gexijin.github.io/vibe/Buildin... Tutorials: gexijin.github.io/vibe/

To be effective, data science agents need to be able to read plots reliably. @sara-altman.bsky.social and I wrote about some concerning findings on LLMs' ability to interpret plots when the content contradicts their expectations on the @posit.co blog. posit.co/blog/introdu...

This is my R development setup — built on VS Code and running both Claude Code and OpenAI’s Codex inside a Docker container. It also supports Shiny apps and has been working great for me. I am on Windows. These coding agents were initially designed for Linux, I think. github.com/gexijin/vibe

The data is searchable on this site that the Renthal lab put together (thanks to Shams in Will's lab for leading this): painseq.shinyapps.io/u19humandrga...

New iDEP feature: instantly annotate k-means clusters with enriched pathways. Fewer clicks, better insights. Explore your data! Give it a spin on your RNA-seq data: bioinformatics.sdstate.edu/idep/

GitHub Copilot Chat in Positron Assistant 🤖 Positron Assistant now supports GitHub Copilot for both completions and chat! Add GitHub Copilot as a model provider for access to its models, chat participants, and tools. Learn more: positron.posit.co/assistant

I put out a patch release of mirai today. Version 2.5.2 really improves the OpenTelemetry integration so you can more easily see into your async workflows. Other key ecosystem packages will roll out with this enabled - next up: Shiny! mirai.r-lib.org #Rstats

In this video, I show how to use iDEP to interpret bulk RNA-seq data. Start with QC plots and exploratory analyses before identifying differentially exp. genes and pathways. We picked up on high mitochondrial rRNA counts, one male mixed in with 7 female mice. www.youtube.com/watch?v=ta1o...

I kicked off a new newsletter focused on time series analysis and forecasting. My goal is to use it as both a framework and motivation to write my upcoming books on time series and forecasting. If you are interested, please sign up here: theforecaster.substack.com #timeseries #rstats #python

The Department of Statistics at the University of Nebraska–Lincoln is under threat of closure, with tenured faculty facing dismissal. This is a small but globally impactful department. Please consider writing a letter of support. Your voice could make a real difference.

5 tools to visualize genomic datasets 🧵 1. Karyoploter bernatgel.github.io/karyoploter...

I had a 26GB TSV file. R choked. So I turned to UNIX. And it worked. 1/ You only need 500 columns. But the file is 26GB. R freezes. Memory bleeds. You need the data—but you don’t need the pain. Here’s what I did.

My weekly newsletter is out! ramikrispin.substack.com/p/the-cagent...

My weekly newsletter is out! ramikrispin.substack.com/p/the-snakem... #llm #ai #python

My Docker Model Runner tutorial is also available on Medium (for paid subscribers). Alternatively, for non-subscribers, it is open in my newsletter. medium.com/data-science... AIOps newsletter: theaiops.substack.com #ai #docker #datascience

Understand NGS sequencing files bioinf.comav.upv.es/courses/seq...

My weekly newsletter is out! This week: 🔹 Open Source of the Week - The PandasAI project 🔹 New learning resources 🔹 Book of the week - Learning SQL by Alan Beaulieu 📌 Join 30k subscribers and subscribe for weekly updates. ramikrispin.substack.com/p/the-pandas... #ai #python #datascience #sql

Hello #dataBS (& especially #TidyTuesday) fam! I'm trying to organize a thing to help me keep TidyTuesday running smoothly, but first I need to get a bit of a runway. Every week I curate a TT dataset, and it's wearing me down. Please see github.com/rfordatascie... for some ways you can help! #RStats

Life-saving idea! Pass it on!

My weekly newsletter is out! This week's agenda: 🛠️ The social-media-kit project 📝 New learning resources 📚Book of the week - Models Demystified by Michael Clark and Seth Berry 📌 Join 30k subscribers and subscribe for weekly updates. ramikrispin.substack.com/p/new-book-m... #datascience #ai

I NEED to tell you the story of Tae Heung “William” Kim. He's a graduate student at Texas A&M where he's working on a vaccine for Lyme disease. He's a *legal permanent resident* of the United States. And he's been in ICE detention for 12 days & counting, transferred Tuesday to South Texas.

Flossie Wong-Staal (1946 – 2020) was a Chinese-American virologist and molecular biologist. She was the first scientist to clone HIV and determine the function of its genes, which was a major step in proving that HIV is the cause of AIDS. 🔬🧪 #WomenInSTEM

I will present on AI-powered data science platforms on Monday, July 21, at 11 am EST at the Univ of Virginia. Zoom link: kohl.aaec.vt.edu/events/data-...

Orbital - new OSS from Posit, looks super practical application for ML pipelines 👇🏼 posit.co/blog/introdu... #python #rstats #datascience

New blog post: @posit.co Positron Assistant provides inline completions with GitHub Copilot and chat/agent using Claude 4 Sonnet. Demo: using agent mode to create an #Rstats package with Roxygen2 docs and testthat unit tests. doi.org/10.59350/gkj...

🚨 BREAKING 🚨 The National Science Foundation has sent an email out to its members to collect signatures for a dissent declaration similar to the NIH’s Bethesda Declaration and the EPA’s Declaration of Dissent. This comes on the heels of Lee Zeldin putting 139 EPA declaration signers on admin leave

Mayor Brandon Scott has reduced crime in Baltimore by 62%, and now has the lowest homicide rate in Baltimore history. How did he do it? NOT be spending more on police. He did it by MAJOR investment in afterschool and literacy programs. Socialism works

What's in the Big Beautiful Bill? I made a simple chatbot! You can ask questions, and AI will answer based on the 500-page document. Ask for summaries or explanations. See the impact on different groups. Kids are off to sleepovers. I'm home alone, bored to tears. ☺️ www.orditus.com/bbb/

Ever wonder how the #tidyverse came to be? 🤔 #TheTestSet's first episode features @hadley.nz on his accidental empire of #RStats packages, bear encounters, and more! Stream it at thetestset.co, Spotify, or Apple Podcasts. #DataAnalytics #PodcastLaunch

I gave a talk on good enough practices for reproducible Bioinformatics at the DataDrivenPharma event organized by Ilya. Thanks, Eric Ma, for hosting us. Please find the slide deck at this link divingintogeneticsandgenomics.com/talk/2025-m...

My weekly LinkedIn Newsletter is out! This week's agenda: 🔹 Open Source of the Week - Marimo extension to Quarto 🔹 New learning resources 🔹 Book of the week - Health Metrics and the Spread of Infectious Diseases by Federica Gazzelloni ramikrispin.substack.com/p/marimo-ext... #rstats #python #ai

Just wrapped up Data Science Camp with 20 amazing high schoolers! We taught a crash course in R and how to use ChatGPT to build web apps. All materials and student projects (mostly games) are available via the link below. 1/n

Weekly Recap (June 2025, part 2): Interactive visualization of tabular data, shared foundations of gene expression and chromatin structure, fast protein structure searching with graph embeddings, visualizing cis-regulatory rules 🧬🖥️🧪 doi.org/10.59350/wrg...

I came across this great tutorial by Oskar Dudycz for setting up a PostgreSQL database and PGadmin IDE inside a container: event-driven.io/en/automatic... #docker #postgres #data

While the world watches Israel's war with Iran, Netanyahu's extremist government continues to starve and massacre Palestinians in Gaza. Today, Israeli forces again opened fire on people desperately trying to collect food aid, killing dozens. Over 56,000 have been killed so far.

PSA: around 5-8% of the population has a color vision impairment for red/green. Many talks at #2025ICDB still use red-green LUTs on slides that are not accessible to everyone. Changing to more accessible colors is doable and easy. We can do better. #devbio #ICDB2025 #WeTheColorBlind

Five VScode Extensions for AI Applications: 1️⃣ GitHub Copilot 2️⃣ Codeium 3️⃣ Continue 4️⃣ Gemini Code Assist 5️⃣ Amazon Q More details are available below: ramikrispin.substack.com/p/five-vscod... #vscode #ai

My weekly newsletter is out 👇🏼 This week's agenda: 🔹 Open Source of the Week - The PostgreSQL VScode extension 🔹 New learning resources 🔹 Book of the week - Forecasting: Principles and Practice - The Pythonic Way ramikrispin.substack.com/p/forecastin... #python #forecasting #llm #datascience

Ever wonder what chemicals are being released in your neighborhood? Excited to launch toxonline.net. Type any U.S. address and get an interactive, map-based view of EPA's Toxics Release Inventory data. It began as Aidan Frederick’s final project in my data science class.

My weekly newsletter is out 🗞️👇🏼 ramikrispin.substack.com/p/the-vitals... #RStats #Python #AI

We're super focused on bringing the latest capabilities to the #Rstats open source community. The acquaint MCP server uses the same event-driven async and modern communications layer as mirai.r-lib.org.

NIH funding supporting the HMMER and Infernal software projects has been terminated. NIH states that our work, as well as all other federally funded research at Harvard, is of no benefit to the US.

All of NIH funding to Northwestern University is frozen. This pause includes noncompeting approved funding, new and competing grants with fundable scores. No reimbursements for money already spent have been received since March. This situation is rarely reported so please Please get the word out!

My weekly newsletter is out! This week's: ✅ Open Source of the Week - The DataMap project by @stevenge.bsky.social ✅ New learning resources ✅ Book of the week - Scaling Up with R and Apache Arrow by Nic Crane, Jonathan Keane, and Neal Richardson ramikrispin.substack.com/p/the-datama... #Rstats

(2/2) ➡️ A function that creates a prompt based on a user's input ➡️ A function that sends the prompt to an LLM and parses the answer into SQL code, and ➡️ A function that picks up the query and sends it to a database to get the data All the workshop materials: github.com/RamiKrispin/...