Margaret Lam
@margaretlam.bsky.social
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Research Fellow at Monash University - microbial genomics, Klebsiella, Acinetobacter, plasmids
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Margaret Lam
Kim Walker
about 2 months ago
The latest in our quest to understand the role of HMV and hypercapsule in convergent Klebsiella is out! So thankful to this team for making this project really fun!
@stphnslsbry.bsky.social
@leslieannaerobe.bsky.social
@margaretlam.bsky.social
@katholt.bsky.social
journals.asm.org/doi/10.1128/...
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The acquisition of rmpADC can increase virulence of classical Klebsiella pneumoniae in the absence of other hypervirulence-associated genes | mBio
Klebsiella pneumoniae is a global pathogen, and gene exchange between hypervirulent (hvKp) and classical (cKp) strains is a rising threat. It is essential to understand how hvKp genes impact virulence phenotypes and identify the cKp strain backgrounds most amenable to enhanced virulence. Hypermucoviscosity (HMV) is a critical virulence factor in hypervirulent K. pneumoniae, conferred by the rmpADC locus. The rmp genes are encoded on mobile genetic elements and have been detected in convergent antibiotic-resistant K. pneumoniae strains of concern. In this study, we explored the impact of rmp acquisition in a broad set of classical clinical isolates. We observed that HMV appears necessary, but not sufficient, for increased virulence. Sequence type, capsule type, and HMV capacity could not predict which classical isolates gain an rmp-dependent colonization benefit. These insights increase our understanding of the distinctions between cKp and hvKp and further our ability to identify and treat new strains of concern.
https://journals.asm.org/doi/10.1128/mbio.03122-25
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Margaret Lam
sylvain Brisse
2 months ago
Huge preprint if you are interested in bacterial strain taxonomy! The why and how of cgMLST LIN codes: An extensively revised and expanded version
doi.org/10.1101/2024...
I will summarize it for you in this thread ๐
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Life Identification Numbers: A bacterial strain nomenclature approach
Unified strain taxonomies are needed for the epidemiological surveillance of bacterial pathogens and international communication in microbiological research. Core genome multilocus sequence typing (cg...
https://doi.org/10.1101/2024.03.11.584534
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Margaret Lam
Marit Hetland
5 months ago
Thrilled to share this preprint on Klebsiella pneumoniae plasmids in a One Health setting ๐ฆ Fantastic work by
@twinkler.bsky.social
! ๐
@irenlohr.bsky.social
@margaretlam.bsky.social
add a skeleton here at some point
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Margaret Lam
Joe Wanford
5 months ago
I want to thank all of my fantastic collaborators their help and support with this work
@codendall.bsky.social
@neisseriaspanin.bsky.social
@margaretlam.bsky.social
@katholt.bsky.social
@josebengoechea.bsky.social
(+ many others not on bluesky)
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Margaret Lam
Hugh Cottingham
6 months ago
Pleased to say that our preprint benchmarking Nanopore data for MLST, cgMLST, cgSNP & AMR typing from bacterial isolates is out! TL;DR you can get almost perfect results from 50x depth using live SUP basecalling with a GPU in under 20 hours
#microsky#IDsky
๐ฆ ๐งฌ๐ฅ๏ธ /1
www.medrxiv.org/content/10.1...
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Margaret Lam
Mehrad Hamidian
9 months ago
๐จ New preprint out! Pan-Genus Analysis and Typing of AMR Plasmids in Acinetobacter Here, is the link:
doi.org/10.21203/rs....
#AMR
#Acinetobacter
@liamtobin1.bsky.social
@margaretlam.bsky.social
@aimi-uts.bsky.social
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Pan-Genus Analysis and Typing of Antimicrobial Resistance Plasmids in Acinetobacter
Plasmids play a central role in horizontal gene transfer and bacterial adaptation, especially in the context of antimicrobial resistance (AMR) among opportunistic pathogens. Some members of the genus ...
https://doi.org/10.21203/rs.3.rs-6165751/v1
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Margaret Lam
Ben Vezina
6 months ago
New preprint where we analysed IS loads in ๐ฆ
#Klebsiella
pneumoniae lineages and found they're inversely associated with nutrient usage. We propose an insertional tolerance model, whereby IS can only insert into metabolically-tolerable sites.
#IDSky
#MicroSky
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www.biorxiv.org/content/10.1...
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Margaret Lam
KlebNET-GSP
9 months ago
We are pleased to launch the KlebNET Genomic Epidemiology Consortium! We aim to build a public metadata repository; systematic risk framework for global genomic surveillance; and genomic epi reviews for high-impact
#Klebsiella
clones. Join us here:
klebnet.org/klebnet-gsp-...
#ABPHM25
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KlebNET-GSP
https://klebnet.org/klebnet-gsp-epidemiology-consortium/
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