MolViewSpec: describe, share, and reproduce Mol* molecular scenes with a simple extension

Register for the Aug 11 Virtual Office Hour on Pairwise Alignment Learn how to align one or more protein chains to a reference structure in a pairwise manner pdb101.rcsb.org/news...

New release for #ipymolstar: I've added a widget for the amazing and very powerful MolViewSpec. This allows you to control the camera📷from python🐍, as well as all other molviewspec features 🎉 ipymolstar repo: github.com/jhsmit/ipymo... Molviewspec: molstar.org/mol-view-spec/

sorry, trying better res

Isosurface of X-ray density only lit by emissive slice of same density. Illuminated in #molstar.

You can try it on Huggingface: huggingface.co/spaces/Jhsmi... The data is only encoded in the link and not stored so you can use it to share unpublished data* (at your own risk, no warranty, links might stop working)

Here's a neat way to share you protein-annotated data 🚀🧪 Upload your .csv with residue/value data, select data column, colormap and norm to interactively color your protein model. Then, add title/description and click the button to open a shareable view with url-encoded data and settings.

A quick molecule of the month render for November's Malaria Parasite PTEX (pdb101.rcsb.org/motm/299) using #b3d and #MolecularNodes #GeometryNodes #SciArt

#ipymolstar v0.0.9: Added click interactions try it on pycafé: py.cafe/jhsmit/ipymo...

Gave a short presentation on Illuminating Molecules in #molstar at the November 2024 #WebGL & #WebGPU Meetup www.khronos.org/events/webgl...

Significant new work on LOD of aggregates! mangosister.github.io/scene_agn_si...

🚀 Excited about our pre-print: AlphaBridge: A User-Friendly Tool for Interpreting Protein Predictions Whether you're an expert or just new to the field of Protein Prediction, AlphaBridge is the way to go! 🔁Try it and share your thoughts! 📜 Article: www.biorxiv.org/content/10.1...

InterProt (interprot.com#/sae-viz/SAE...) is a tool that applies the same interpretability analysis used to make Golden Gate Claude to protein language models. For example feature 4000 recognizes residues lining inside of de novo designed & natural transmembrane beta-barrels (PDBs 6X1K, 6X9Z, 2MLH)

Two-way tertiary/primary structure hover and highlight with #ipymolstar and #altair Try it on pycafe: py.cafe/jhsmit/ipymo...

Ionic lock in inactive rhodopsin - illuminated in #molstar