Peter Shum
@shump.bsky.social
📤 118
📥 191
📝 11
Tennis, genomics, father of two girls!
reposted by
Peter Shum
15 days ago
New paper alert! We show deep genetic divergence between morphotypes of Actinia equina and evidence of ploidy-based gene flow barrier. Thanks to co-authors at
@uniexecec.bsky.social
and LinneSys fund of
@linneansociety.bsky.social
and
@systassn.bsky.social
for funding.
tinyurl.com/mr2mmmnp
loading . . .
https://authors.elsevier.com/a/1m1dm51aUv0%7EiNew
0
3
2
Divergence and admixture of an island gecko!!
rdcu.be/eMh85
@ljmulibrary.bsky.social
@ljmu-ris.bsky.social
#genomics
loading . . .
Genomic identification of conservation areas amid lineage divergence and admixture in a threatened island gecko
https://rdcu.be/eMh85
22 days ago
0
0
0
reposted by
Peter Shum
Dr Danni Hinchcliffe
23 days ago
One week left to apply for this fully funded PhD studying pied flycatchers in the Peak District at
@ljmuofficial.bsky.social
in collaboration with
@nationaltrust.org.uk
A 🐦 project that inc.
#genetics
#physiology
&
#conservation
#technology
to explore bird fitness.
www.findaphd.com/phds/project...
loading . . .
Should I stay or should I go: Drivers of variation in population performance of a migratory bird (Pied flycatcher, Ficedula hypoleuca) as a proxy for monitoring wider climate and habitat impacts. at L...
PhD Project - Should I stay or should I go: Drivers of variation in population performance of a migratory bird (Pied flycatcher, Ficedula hypoleuca) as a proxy for monitoring wider climate and habitat...
https://www.findaphd.com/phds/project/should-i-stay-or-should-i-go-drivers-of-variation-in-population-performance-of-a-migratory-bird-pied-flycatcher-ficedula-hypoleuca-as-a-proxy-for-monitoring-wider-climate-and-habitat-impacts/?p187334
0
5
8
reposted by
Peter Shum
Dr Danni Hinchcliffe
about 1 month ago
Thrilled to share my latest open access research publication - Shifting Seasons: Long‐Term Insights Into Climate Change Effects on Bird Phenology From UK Bird Observatory Ringing Data
#ornithology
#ljmu
#impact
@ljmuofficial.bsky.social
@ljmu-ris.bsky.social
onlinelibrary.wiley.com/doi/10.1002/...
loading . . .
Shifting Seasons: Long‐Term Insights Into Climate Change Effects on Bird Phenology From Ringing Data
This study analyses a 25-year bird ringing dataset from Spurn Bird Observatory to assess how climate change affects migratory bird arrival times and species abundance. While there was a weak associat...
https://onlinelibrary.wiley.com/doi/10.1002/ece3.72317
0
8
3
reposted by
Peter Shum
Javier Santoyo
about 1 month ago
Nanopore sequencing and haplotyping of mitochondrial DNA hypervariable regions and its application on mixed stain.
#MitochondrialDNA
#HypervariableRegions
#Nanopore
#Sequencing
#ForensicDNA
#ForensicScienceInternational_Genetics
www.sciencedirect.com/science/arti...
0
1
1
reposted by
Peter Shum
Physalia-courses@Online
2 months ago
Learn eDNA metabarcoding with
@nanoporetech.com
! 🧬💻 Hands-on online course with
@shump.bsky.social
covering lab workflows & bioinformatics—turn samples into real biodiversity insights.
#eDNA
#longreads
#Nanopore
www.physalia-courses.org/courses-work...
0
3
3
reposted by
Peter Shum
Magnus Johnson
4 months ago
Some hints and tips for those new to teaching in university/college based on 25 years afore the lectern. Some are my own, others stolen from colleagues.
www.marine-biology.net/he-teaching-...
loading . . .
HE Teaching hints and tips.
Since I first wrote this we have been challenged by the rapid rise of the AI monster. I have spent days over the last 2 years working out how students have cheated on written reports. I detest the …
https://www.marine-biology.net/he-teachin
0
2
1
reposted by
Peter Shum
Physalia-courses@Online
4 months ago
🚀 A big thank you to all participants and instructors of our eDNA Metabarcoding course! 🙌 We explored amazing user-friendly tools like BolDigger, Aspcale, and TaxonTable, had a great intro to
@nanoporetech.com
data, and wrapped up with an inspiring open discussion full of ideas and projects.
1
3
3
reposted by
Peter Shum
Mike Galsworthy
5 months ago
Everyone should write to their MP saying: Israel’s attack on Iran is insane. It is also being used to distract from Gaza, where internet has been cut, and the West Bank, where settlements are aggressively expanding. The UK government MUST recognise the State of Palestine now. Does your MP agree?
52
761
251
reposted by
Peter Shum
Javier Santoyo
5 months ago
SVbyEye: A visual tool to characterize structural variation among whole-genome assemblies.
#StructuralVariants
#SVs
#Visualization
#WholeGenome
#Assemblies
#Bioinformmatics
academic.oup.com/bioinformati...
0
6
3
reposted by
Peter Shum
Physalia-courses@Online
6 months ago
Join us for the Eukaryotic Metabarcoding course w/
@leeselab.bsky.social
@dominikbuchner.bsky.social
shorturl.at/wRW4T
Till &
@shump.bsky.social
Get hands-on experience analysing Illumina &
@nanoporetech.com
data & learn how to run metabarcoding pipelines from raw sequences to ecological insights
loading . . .
Eukaryotic metabarcoding
14-18 July 2025 To foster international participation, this course will be held online
https://www.physalia-courses.org/courses-workshops/course4/
0
3
2
reposted by
Peter Shum
Andhika Prasetyo
6 months ago
The study recommends protecting multiple nesting sites within the BHS to preserve the genetic diversity and distinct subpopulations of leatherback turtles. Incorporating genetic data into conservation planning is necessary to ensure targeted and effective management.
add a skeleton here at some point
0
3
2
reposted by
Peter Shum
Naiara Sales
7 months ago
🧬Have you used DNA metabarcoding in your research or work? We want to understand how this tool can help monitor neotropical biodiversity and gather insights into the experiences, challenges, and needs of those using it, including researchers and environmental managers.
forms.gle/osk8T7gGyabq...
loading . . .
Survey on the use of DNA metabarcoding
In order to strengthen the standardization and use of DNA metabarcoding in Neotropical biodiversity monitoring, it is essential to understand how the results and analyses of this approach have been us...
https://forms.gle/osk8T7gGyabqQDdF9
1
4
6
reposted by
Peter Shum
Physalia-courses@Online
8 months ago
This morning, as part of the AquaEcOmics meeting, we ran a 4-hour crash course on
#eDNA
#metabarcoding
with
@nanoporetech.com
data, led by
@shump.bsky.social
A fantastic deep dive into the analysis workflow, packed with insightful case studies — a great start to the day!
0
7
1
reposted by
Peter Shum
The Mariani Lab
8 months ago
Another side of
#seafood
#mislabeling
:
@marscicaf.bsky.social
(with
@shump.bsky.social
and others) emphasizes that, if we can’t fully trace
#cod
product origin, what chance do we have with dozens/hundreds of other less-studied traded species? Paper here:
www.sciencedirect.com/science/arti...
add a skeleton here at some point
0
9
5
reposted by
Peter Shum
Darin Self
9 months ago
Tracking the performance of the S&P 500 through 100 days of an administration because I don't want to grade.
115
5460
2000
reposted by
Peter Shum
Shawn Baker
9 months ago
Roche’s Fantasy Sequencer Slowly Turning Into a Fantastic Reality
#sequencing
#nanopore
#genomics
sandiegomics.com/roches-fanta...
loading . . .
Roche’s Fantasy Sequencer Slowly Turning Into a Fantastic Reality
After 10+ years of mostly silence, Roche is finally starting to lift the curtain on their nanopore sequencer. It’s based on a combination of Genia’s nanopore platform (acquired in 2014) and Stratos…
https://sandiegomics.com/roches-fantasy-sequencer-slowly-turning-into-a-fantastic-reality/
1
24
13
reposted by
Peter Shum
SassyMetisChick
9 months ago
The Indigenous People of North America have decided to go back to calling the Gulf of Mexico, “Chalchiuhtlicueyecatl”. It is what the Nahuatl People originally called it as it is the domain of the goddess Chalchiuhtlicue, who is assoc w/water bodies, including the Gulf of Mexico.
1015
41048
11467
reposted by
Peter Shum
Physalia-courses@Online
9 months ago
📢Registrations are now open for the next edition of the Eukaryotic Metabarcoding Workshop with
@leeselab.bsky.social
@dominikbuchner.bsky.social
@tillmacher.bsky.social
&
@shump.bsky.social
📅Save the dates: 14-18 July 🔗For more information:
www.physalia-courses.org/courses-work...
0
3
3
reposted by
Peter Shum
Physalia-courses@Online
10 months ago
🌊 Food Traceability Using Genomic Tools 🧬 Join us for an online course with
@marianilab.bsky.social
&
@shump.bsky.social
, in February, to learn how cutting-edge genomic technologies (@illumina,
@nanoporetech.com
& qPCR) are revolutionising seafood traceability and sustainability
shorturl.at/Wsdyz
0
5
4
reposted by
Peter Shum
Paddy Tkaczynski
10 months ago
Royal Society Newton Fellowships are open:
royalsociety.org/grants/newto...
If you're from outside the UK, looking for a primate-focused postdoc related to our current projects (
www.plasticprimateslab.com/our-projects...
), get in touch!
loading . . .
Newton International Fellowships | Royal Society
This fellowship is for non-UK scientists who are at an early stage of their research career and wish to conduct research in the UK.
https://royalsociety.org/grants/newton-international/
0
7
5
reposted by
Peter Shum
Physalia-courses@Online
10 months ago
Only 2 seats left!!!
add a skeleton here at some point
1
1
1
reposted by
Peter Shum
Love Dalén
10 months ago
At Stockholm University, we are now starting a 2-year Master’s programme in Evolutionary Genomics! Topics include population genetics, phylogenetics, molecular & genome evolution, DNA sequencing, bioinformatics, and palaeogenetics. Please spread the word!
www.su.se/english/sear...
0
126
92
In Sicily for Christmas - like every year for the last 10 years - and I have never seen so many mosquitoes in winter! worse than being here in summer!!
11 months ago
0
0
0
reposted by
Peter Shum
Physalia-courses@Online
11 months ago
What an incredible journey bringing together researchers from across the globe to learn about eDNA metabarcoding from these stellar instructors
@leeselab.bsky.social
Dominik Buchner, Till-Hendrik Macher and
@shump.bsky.social
!🗺️🧬 Big thanks to
@ednacollab.bsky.social
for making it all happen! 💡💫
0
7
5
reposted by
Peter Shum
Physalia-courses@Online
11 months ago
After three days of learning about eDNA metabarcoding with short reads, it’s exciting to have
@shump.bsky.social
sharing with us his expertise on eDNA metabarcoding using long reads.
@leeselab.bsky.social
@marianilab.bsky.social
0
6
2
reposted by
Peter Shum
Physalia-courses@Online
11 months ago
🚨 We’re thrilled to kick off the eDNA Metabarcoding course, funded by
@ednacollab.bsky.social
! 🌍 Researchers worldwide are joining us this week to learn how to analyse their eDNA data with guidance from an exceptional team of instructors.
@leeselab.bsky.social
@shump.bsky.social
0
7
6
reposted by
Peter Shum
Physalia-courses@Online
12 months ago
📢 As part of the
#AquaEcomics
Symposium, we're offering a 1-day course on
#eDNA
#metabarcoding
with
@nanoporetech.com
Sequencing Technology with
@shump.bsky.social
on March 21st. 🧬🌊 Seats are limited—reserve yours today! 🔗
www.physalia-courses.org/courses-work...
1
13
10
reposted by
Peter Shum
Physalia-courses@Online
12 months ago
🐟Food Traceability Using Genomic Tools🧬 Learn how cutting-edge genomic technologies (Illumina,
@nanoporetech.com
, qPCR) are revolutionising food traceability and sustainability 🦾:
@shump.bsky.social
&
@marianilab.bsky.social
🔗https://www.physalia-courses.org/courses-workshops/food-traceability/
0
9
5
Received the latest in
#nanopore
#mc1d
tech today. Will use it today to generate data for the
@physaliacourses.bsky.social
bioinformatics workshop in December in Collab with
@ednacollab.bsky.social
12 months ago
2
11
3
I have been invited to review 8 papers this week. Unfortunately I won't be doing any new reviewing tasks for the rest of the year. Look forward to reading the published papers!
12 months ago
1
2
0
reposted by
Peter Shum
Physalia-courses@Online
over 1 year ago
Registrations are now open for the course "Food Traceability Using Genomic Tools" with
@shump.bsky.social
and
@marianilab.bsky.social
in July (2-5). From Sanger sequencing to cutting-edge technologies, it covers it all—plus bioinformatic analysis!
www.physalia-courses.org/courses-work...
0
0
2
Plugging a recently published paper on nanopore sequencing of seafood products for improved traceability of geographic origin.
shorturl.at/bnyIK
over 1 year ago
0
4
4
Check out the buffet of prey on offer for Norwegian lobster from suspension feeding to active foraging. A fresh wave of data for better fisheries management. 🦞
#Scampi
#Metabarcoding
journals.plos.org/plosone/arti...
loading . . .
DNA metabarcoding reveals the dietary profiles of a benthic marine crustacean, Nephrops norvegicus
Norwegian lobster, Nephrops norvegicus, are a generalist scavenger and predator capable of short foraging excursions but can also suspension feed. Existing knowledge about their diet relies on a combi...
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0289221
about 2 years ago
0
5
3
I have arrived. thanks to
@marianilab.bsky.social
for the invite.
about 2 years ago
0
5
2
you reached the end!!
feeds!
log in