Read the full paper here: tinyurl.com/2a5z6tt8

🔬 New blog post! Infections after joint replacement are serious, and identifying the bacteria quickly is crucial for patient care. We explain our research into metagenomic sequencing—reading all DNA in a sample to identify bacteria without needing lab growth. 👉 tinyurl.com/mrh8ukha #AMR #Genomics

Our paper is out in Microbial Genomics! 🧬 We evaluate gnomonicus, an open-source AMR prediction tool, using 2,663 Mycobacterium tuberculosis genomes—showing how WGS can deliver faster, scalable TB resistance predictions. Read the full paper here🔗 bit.ly/4iZepd1 #TB #AMR #Genomics

📢Job Alert! Translational Research Collaboration Manager in Infectious Disease and Antimicrobial resistance. 🦠💊 Know anyone who would be good? Pass it on! www.imperial.ac.uk/jobs/search-...

Our team wore blue for World Antimicrobial Awareness Week 2025💙 Research into how resistance emerges, spreads and can be prevented is vital. Our group works to understand these processes and develop better tools to detect, monitor and combat antimicrobial resistance. #WAAW @oxfordbrc.bsky.social

This World Antimicrobial Resistance Awareness Week #WAAW, we’re championing our microbiology and infection researchers whose work is benefiting patients and informing health care policy. Read: oxfordbrc.nihr.ac.uk/research-the... @ox.ac.uk @ouhospitals.bsky.social @modmedmicro.bsky.social

Why is antimicrobial awareness important? Antimicrobial resistant infections are rising. In the next 25 years an estimated 39.1 million people globally will die from infections with antimicrobial resistance. So what can you do to help? Something as simple as finishing your course of antibiotics!

For #WorldAntimicrobialAwarenessWeek, we introduce our recent paper on antibiotic-resistant subpopulations in TB. TB may be one of humanity’s oldest diseases, yet it still kills over 1M people yearly. As resistance spreads, knowing each patient’s resistance profile before treatment is vital. 🧬💊

Antimicrobial resistance occurs when bacteria, viruses, fungi & parasites change over time - leading to medicines being less effective against them. Here you see bacteria growing and antibiotics (the small discs) which kill the bacteria...unless they are resistant! #WAAW #AMR @oxfordbrc.bsky.social

Are you interested in infections, the micro-organisms that cause them and antimicrobial resistance? So are @bashthebug.net and they're looking for new members to join their patient & public group. More info: bashthebug.net/lay-represen... Deadline 27 Nov @ouhospitals.bsky.social @medsci.ox.ac.uk

New paper by @vbrunner.bsky.social looking at detecting rifampicin resistant subpopulations in M. tuberculosis infections using genetics and putting a lower limit on the proportion that arose due to secondary infections. bit.ly/47rwf42 @modmedmicro.bsky.social @oxfordbrc.bsky.social

🔔🔔Post-doc in microbial genomics with @modmedmicro.bsky.social🧬 - deadline tomorrow! Big genomic and clinical datasets to play with, friendly and very multidisciplinary team! my.corehr.com/pls/uoxrecru...

Our recent paper on rifampicin resistant subpopulations in M. tuberculosis (M. tb) has been published at JAC-antimicrobial resistance. I am really happy to see this work published just hours before submitting my DPhil thesis! 🔗👇 doi.org/10.1093/jaca...

We have a fully funded PhD studentship available @modmedmicro.bsky.social in Oxford to work on a really cool project looking at population heterogeneity in bloodstream infections www.ndm.ox.ac.uk/study/dphil-... Please spread the word/get in touch if you'd like to chat.

Now published in @natcomms.nature.com 🎉 www.nature.com/articles/s41... With Gillian Rodger, @nstoesser.bsky.social, @samlipworth.bsky.social, @stat-sarah.bsky.social, and many others!

🧪 ♻️ Want to make lab and computational research more sustainable? Check out our Oxford Climate Society blog post: oxfordclimatesociety.com/blog/from-pi... Shout out to Green Team colleagues @modmedmicro.bsky.social for helping! #LEAFAward #GreenDiSC #GreenImpact #SustainableScience

From Pipettes to Pipelines: Greening a Multidisciplinary Research Lab. @dotnagy.bsky.social writes about the experiences from the Modernising Medical Microbiology (MMM) research group on engaging wet lab, computer lab, and office teams on the #sustainability agenda. #GreenLab #SustainableScience

Great new work from #DotNagy @modmedmicro.bsky.social - she tool 96 clinical isolates from the NEKSUS study and sequenced with both Illumina and Nanopore - question was, can we do away with hybrid sequencing for the rest of the study? www.biorxiv.org/content/10.1...

Pleased to see this pre-printed, highlighting the completeness/accuracy of @nanoporetech.com long-read genome assembly for clinical Enterobacterales: www.biorxiv.org/content/10.1... Thanks to colleagues @modmedmicro.bsky.social, @ukhsa.bsky.social, @genewiz.bsky.social and @oxfordbrc.bsky.social!

Come and work with Nicole Stoesser and I in Oxford with the fantastic team @modmedmicro.bsky.social - great opportunity for a postdoc in microbial genomics to do some creative research with great datasets as part of our HPRU. my.corehr.com/pls/uoxrecru...

Great new opportunity to work with #Liamshaw and @mutantbug.bsky.social as part of our HPRU collaboration (www.expmedndm.ox.ac.uk/research/hpr...) - sinks, phages, wastewater genomes, novel threat detection bit.ly/45Wcv6I - deadline 14th Sept 👀

'Linking life expectancy to the bacteria in our gut: A final year undergraduate project'. Akika investigated how the gut microbiome influences longevity, with fieldwork in Nagano, Japan—home to the country’s longest-living population. Read the blog post here ➡️ bashthebug.net/2025/08/22/l...

More evidence to support best practice "water-safe" care in healthcare facilities is urgently needed. If you're interested please tap into the @hisinfection.bsky.social Wastewater and AMR Special Interest Collaborative (SPARC) - see you there!

More discussion about the JHI study with @emrsa15.bsky.social in the Infection Control Matters podcast series infectioncontrolmatters.com/2025/04/02/t...

This builds on the SinkBug group's earlier work in @thejhi.bsky.social www.journalofhospitalinfection.com/article/S019... where we showed that sink infrastructure in hospitals was common, highly varied, and that antibiotics were detected in a third of sink-traps.

New analysis from Kevin Chau @modmedmicro.bsky.social for the SinkBug Consortium (a collaboration with teams across 29 UK hospitals, NITCAR, UKHSA): Pathogen and AMR gene burden in 287 hospital sink-trap metagenomes and factors associated with high burdens.

Participate at our global conference on Antimicrobial Resistance🧬 🗓️ 23-25 March 2026 #AMR2026 Join a community at the vanguard of #AMR genomics, to explore how big data and innovative technologies are driving solutions to tackle this health crisis. 📎Abstracts welcome: bit.ly/3SWzJUm #MicroSky

Bit over 24 hours left to apply for these two posts to help us develop pipelines to process pathogens..! Senior Bioinformatic Engineer bit.ly/4ecl0hF Senior Biostatistical Researcher bit.ly/4kRfZxI Grade 8 or 7, depending on experience closing date: noon Tues 8 July

Job advert to come and work with me on tuberculosis closes tomorrow (Friday) at noon! Part of #OxCOD4TB bit.ly/4ndKOhF @ndm.ox.ac.uk @modmedmicro.bsky.social @oxfordbrc.bsky.social

Come and work with us! Senior Biostatistical Researcher bit.ly/4kRfZxI Senior Bioinformatic Engineer bit.ly/4ecl0hF both Grade 8 or 7, closing noon Tue 8 Jul Computational Mycobacteriologist Grade 7, closing noon Fri 4 Jul bit.ly/4ndKOhF @medsci.ox.ac.uk @oxfordbrc.bsky.social @ndm.ox.ac.uk

Three posts all closing next week! Senior Biostatistical Researcher bit.ly/4kRfZxI Senior Bioinformatic Engineer bit.ly/4ecl0hF both Grade 8 or 7, closing noon Wed 2 Jul Computational Mycobacteriologist Grade 7, closing noon Fri 4 Jul bit.ly/4ndKOhF @medsci.ox.ac.uk

Come and work with me and use the 53,897 samples of M. tuberculosis we have collated to help tackle this important disease! We are part of the OxCoD4TB consortium that is developing new therapeutics for tuberculosis. Grade 7, funding until 28 Feb 2028, deadline noon Fri 4 July bit.ly/4ndKOhF

@vbrunner.bsky.social doing her pitch for her poster at #ESMyco! @modmedmicro.bsky.social

Just like buses, here is a third role we are advertising for! Come and help @philipwfowler.bsky.social use the large TB datasets we hold to help the OxCoD4TB consortium develop new therapeutics for tuberculosis. Grade 7, funding until 28 Feb 2028, deadline noon Fri 4 July bit.ly/4ndKOhF

Come and help us develop and validate genetic pipelines for processing pathogens in collaboration with @eitoxford.bsky.social Senior Bioinformatic Engineer bit.ly/4ecl0hF Senior Biostatistical Researcher bit.ly/4kRfZxI Grade 8 or 7, depending on experience closing date: noon Wednesday 2 July

Come and help us develop and validate genetic pipelines for processing pathogens in collaboration with @eitoxford.bsky.social Senior Bioinformatic Engineer bit.ly/4ecl0hF Senior Biostatistical Researcher bit.ly/4kRfZxI Grade 8 or 7, depending on experience closing date: noon Wednesday 2 July

Come and find @modmedmicro.bsky.social at the Westgate in Oxford as part of the @oxfordbrc.bsky.social showcase!

Come along to Oxford’s Westgate Centre on Thursday 29 May for our Health Research Showcase, held jointly with @oxhealthbrc.bsky.social. It's a fantastic and fun way to find out about the research taking place in Oxford. oxfordbrc.nihr.ac.uk/brc-event/he... @ouhospitals.bsky.social @medsci.ox.ac.uk

Kevin Yuan talking now at #ESCMIDGlobal in Hall 9!

And on the last day of #ESCMIDGlobal we have 1406 Hall 9 - Kevin Yuan P3166 - Dot Nagy

ModMedMicro at #ESCMIDGlobal (well nearly everyone!)

…and Valentina Pennetta presenting her poster! With MICs for 38 ABX for each sample 😱

@junkotakata.bsky.social presenting her poster at #ESCMIDGlobal!

Another busy day at #ESCMIDGlobal! 0906 @vbrunner.bsky.social “RIF and subpopulations in TB” 0918 Ruan Spies “comparing TB pipelines" both in Hall 5 1000 Nicole Stoesser “plasmids & 1Health” in H2 1509 Jane Wei in Hall 2 “CAP and EHR” P1405 - Valentina Pennetta P2242 - Junko Takada

Busy day at #ESCMIDGlobal for us! Check out 1330 Justin Xu in Hall 2 "AI in radiological reports" 1445 @samlipworth.bsky.social in Area 3 "Mol epi of Kleb using ONT" P0602 @philipwfowler.bsky.social P0663 Jeremy Westhead P0675 Dylan Adlard P0730 Amelie Andrews P0869 @dotnagy.bsky.social

1/14 Delighted that our COVID paper is out now @thelancetinfdis.bsky.social - authors.elsevier.com/a/1kta85E-Uo... Link is to free full text. Some notes....

#Tuberculosis kills over a million people each year, but research can change that. The following seminar shows how our scientists are developing new vaccines and treatments, while a former patient shares her experience youtu.be/vky73AhyjEc?... #WorldTBDay @modmedmicro.bsky.social @ndm.ox.ac.uk

Closing dates for applying for these jobs are Mon, Wed and Fri next week! All are at noon on the day. RA/PDRA (Grade 6/7) noon 10 Feb bit.ly/4jANpAc Senior Bioinformatician (G8) 12 Feb bit.ly/4hcMB3b Senior Medical Statistican (G8) 14 Feb bit.ly/4hcMEfn

Three roles currently advertised, all to help us develop and validate genetic pipelines for processing pathogens with EIT Oxford. RA/PDRA (Grade 6/7) noon 10 Feb bit.ly/4jANpAc Senior Bioinformatician (G8) 12 Feb bit.ly/4hcMB3b Senior Medical Statistican (G8) 14 Feb bit.ly/4hcMEfn

Three roles currently advertised, all to help us develop and validate genetic pipelines for processing pathogens with EIT Oxford. RA/PDRA (Grade 6/7) noon 10 Feb bit.ly/4jANpAc Senior Bioinformatician (G8) 12 Feb bit.ly/4hcMB3b Senior Medical Statistican (G8) 14 Feb bit.ly/4hcMEfn