Deeksha Singh
@sdeeksha1994.bsky.social
📤 60
📥 220
📝 6
Happy to finally see my PhD work published in
@jxbotany.bsky.social
. A big thanks to all the people involved in the work including my mentor
@malinowskilab.bsky.social
. Feel free to delve in..
add a skeleton here at some point
2 days ago
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Deeksha Singh
Tatsuya Nobori
14 days ago
SALICYLIC ACID SENSOR1 reveals the propagation of an SA hormone surge during plant pathogen advance
www.science.org/doi/10.1126/...
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https://www.science.org/doi/10.1126/science.adw7650
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Deeksha Singh
Nature Plants
16 days ago
New Article: "A mobile DELLA controls Medicago truncatula root cortex patterning to host arbuscular mycorrhizal fungi"
rdcu.be/eJO9O
Mobile transcriptional regulators DELLA and SHORT-ROOT control the number of root inner cortex cell layers able to host symbiotic AMF.
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Deeksha Singh
Merissa Huei-Hsuan Tsai
21 days ago
Very excited to see our
@nikogeldner.bsky.social
lab x Feng Zhou lab work featured on the cover of Science! (1/5) We reveal how root architecture and nutrient leakage shape spatial patterns of microbial colonization, moving beyond traditional models of uniform exudation.
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Merissa Huei-Hsuan Tsai
21 days ago
Read the paper 👉 Localized glutamine leakage drives the spatial structure of root microbial colonization | Science
www.science.org/doi/10.1126/...
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Localized glutamine leakage drives the spatial structure of root microbial colonization
Plant roots release exudates to encourage microbiome assembly, which influences the function and stress resilience of plants. How specific exudates drive spatial colonization patterns remains largely ...
https://www.science.org/doi/10.1126/science.adu4235
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Deeksha Singh
Science News
10 months ago
7. How to write consistently boring scientific literature. “Hell – is sitting on a hot stone reading your own scientific publications” Erik Ursin, fish biologist Thanks
@fattebertj.bsky.social
Open Access
nsojournals.onlinelibrary.wiley.com/doi/epdf/10....
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Deeksha Singh
Nature Biotechnology
27 days ago
A tiny white-petalled weed beloved of plant biologists has received a CRISPR-fueled makeover, turning it into a supersized ruby-colored bloom
www.nature.com/articles/s41...
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Blooms supersized - Nature Biotechnology
Nature Biotechnology - Blooms supersized
https://www.nature.com/articles/s41587-025-02825-3
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Deeksha Singh
Rodrigo Figueroa
28 days ago
Please help me get a job in a different country
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Such a lovely title!
add a skeleton here at some point
28 days ago
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Deeksha Singh
Daan Weits
about 1 month ago
Coming to you live from
#ISPLORE2025JP
Fresh preprint from my lab showing that leaves progressively oxygenate and how this is important for their morphogenesis.Thanks to our collaborators from @Fra_LicO2si lab.
#plantscience
www.biorxiv.org/content/10.1...
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Nick Desnoyer
about 1 month ago
Color changing flowers 🧬🎨- attempt #2 Older flowers (bottom) show dark red/ orange tints whereas young buds (top) display strong fuchsia color. Getting closer..
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Deeksha Singh
about 1 month ago
Looking for some clarity in the labyrinth of terms regarding lateral root initiation (priming, founder cell specification, pre-branch sites, oscillation zone, root clock,...)? Here is our new paper hopefully bringing some light in the darkness:
track.smtpsendmail.com/9032119/c?p=...
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Marker-assisted in vivo imaging reveals pre-patterning events prior to lateral root organogenesis
The branching pattern of the Arabidopsis root is established as early as in the distal tip of the primary root.
https://track.smtpsendmail.com/9032119/c?p=XlRhmytC2TiQHBzuiU6iE5uyfAXUQlO8umJ-cUfzCDAiY74k6l_4pxT3oP04Buby9WldDiBmPr0KFEycwOzAbW580VMX02tIYcCkuvD08B4wA4g2fypV3ywiN0zipXKGi-JRgwIFiaZt-VDOI1uHHXolkgAuLaXoj1hpjlAq8zxEDmF09DlX5f2zH-ARzQYJQ_SvG9CJe1yvanK29qt4G70zP-2uzeb_LOIpPS1ExT19L-wpwhPvvE7KWw0gQVI-OcZWM9ibdEkYWwdSKAij-z_mxS1iKuIV9EeXo3m3OeTseEG30x57hQD4nC7zKyezIcrl1EQXTcyzP0YteUMK7sESFAvEFrn_xXkcsHzhOoewnTMD-j13jYT2pbbnZrtilLTFcehs7T258S9CTrAToQ==
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Deeksha Singh
Kierzkowski Lab
about 1 month ago
Join us at the Plant Science Research Institute of the University of Montreal to develop your research group in Plant Molecular Genetics:
www.nature.com/naturecareer...
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Assistant Professor in Plant Molecular Genetics - Montréal, Quebec (CA) job with Institut de recherche en biologie végétale (IRBV) | 12844852
A full-time tenure-track assistant professor position at the IRBV, Université de Montréal.
https://www.nature.com/naturecareers/job/12844852/assistant-professor-in-plant-molecular-genetics/
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Deeksha Singh
Ari Pekka Mähönen
about 1 month ago
🌱 What happens when lateral root primordia (LRPs) fail to emerge? Using our new lineage tracing tool LRTracker, Xin discovered that arrested LRPs don’t just disappear—they gradually switch fate and become part of the cambium, contributing to secondary growth.1/x
www.sciencedirect.com/science/arti...
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Hormonal regulation of cell fate plasticity of xylem-pole-pericycle lineage in Arabidopsis roots
In Arabidopsis roots, xylem-pole-pericycle (XPP) cells exhibit dual cell fates by contributing to both lateral root (LR) and cambium formation. Despit…
https://www.sciencedirect.com/science/article/pii/S1674205225003132?via%3Dihub
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Deeksha Singh
Edel Pérez-López 🇨🇦
about 1 month ago
Déjà vu in clubroot resistance: same genes, new names: Trends in Genetics
www.cell.com/trends/genet...
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Déjà vu in clubroot resistance: same genes, new names
Despite decades of clubroot research, only three resistance (R) genes have been validated. However, many of the ‘new’ R genes are, in fact, identical to or allelic with these three. In this forum arti...
https://www.cell.com/trends/genetics/fulltext/S0168-9525%2825%2900197-0
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Deeksha Singh
Charlotte Wright
about 1 month ago
How many chromosomes can an animal have? In our paper out now in
@currentbiology.bsky.social
we show that the Atlas blue butterfly has 229 chromosome pairs- the highest in diploid Metazoa! These arose by rapid autosome fragmentation while sex chromosomes stayed intact.
www.cell.com/current-biol...
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Constraints on chromosome evolution revealed by the 229 chromosome pairs of the Atlas blue butterfly
The genome of the Atlas blue butterfly contains ten times more chromosomes than most butterflies, and more than any other known diploid animal. Wright et al. show that this extraordinary karyotype is ...
https://tinyurl.com/atlasbluebutterfly
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Deeksha Singh
Maite Saura
about 1 month ago
New preprint! 🐛 Root-knot nematodes hijack root cells, turning them into feeding sites and making plants very sick. Using a cross-species scRNA-seq approach we mapped this process and show how this knowledge can be used to engineer resistant crops.🌱 A summary🧵 :
www.biorxiv.org/content/10.1...
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Deeksha Singh
Ronald Pierik
about 2 months ago
New paper: Gibberellins are long-distance regulators of shoot-to-root signalling of the light environment Our latest paper ( published online in Plant Cell, shows that Gibberellins are involved in long-distance signalling of phytochrome-sensed light signals all the way in to the roots that are not…
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New paper: Gibberellins are long-distance regulators of shoot-to-root signalling of the light environment
Our latest paper ( published online in Plant Cell, shows that Gibberellins are involved in long-distance signalling of phytochrome-sensed light signals all the way in to the roots that are not light-exposed but still respond to light quality changes. We think that not only the precursor GA12, but also bioactive GA4 is shoot-to-root mobile. The work was led by former postdoc…
http://plantphotobiology.com/2025/08/28/new-paper-gibberellins-are-long-distance-regulators-of-shoot-to-root-signalling-of-the-light-environment/
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Deeksha Singh
The Plant Cell
about 2 months ago
PRC2 regulates cytokinin and HD-ZIP III pathways to orchestrate vascular tissue pattern formation in Arabidopsis (Yufei Zhang , Runzhou Huang , Tingting Yang , An Li , Zihao Wang , Yuexin Wu , Yang Deng , Jing Zhang , Xin-Qiang He , Yue Zhou)
doi.org/10.1093/plce...
#PlantScience
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PRC2 regulates cytokinin and HD-ZIP III pathways to orchestrate vascular tissue pattern formation in Arabidopsis
PRC2 regulates vascular patterning in hypocotyls by repressing cytokinin biosynthesis genes via H3K27me3 deposition, thereby modulating cytokinin signaling
https://doi.org/10.1093/plcell/koaf194
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Deeksha Singh
Robert Malinowski LAB - Institute of Plant Genetics Poznan
2 months ago
Dive into the fascinating journey of potatoes and discover the secrets behind how they developed their incredible ability to produce tubers.
onlinelibrary.wiley.com/doi/10.1111/...
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Deeksha Singh
Andreas P.M. Weber 🌾🌱🧬
2 months ago
How amino acids are transported in plants | EurekAlert!
www.eurekalert.org/news-release...
@hhu.de
@franzikuhnert.bsky.social
@weberlab.bsky.social
@ceplas.bsky.social
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How amino acids are transported in plants
Plants produce all amino acids essential for human life. This commonly occurs in specialised cell organelles, so-called plastids. A research team headed by Heinrich Heine University Düsseldorf (H...
https://www.eurekalert.org/news-releases/1095607
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Deeksha Singh
Nick Desnoyer
2 months ago
Friday Flower 001: Mimulus lewisii 🌸✨ Monkeyflowers are masterpieces of design with nectar-guide spots formed by an activator–inhibitor system of MYB transcription factors. These generate reaction–diffusion patterns across the ventral petal.
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Pretty little baby...La la !
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2 months ago
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Deeksha Singh
Travis Lee
2 months ago
Thrilled to have our spatial single-cell atlas of the Arabidopsis lifecycle in @NaturePlants. Turns out that its easy to make nice images when spatial expression of 1,000 genes is available! 1/n
@natanellae.bsky.social
@tatsuyanobori.bsky.social
@joeecker.bsky.social
www.nature.com/articles/s41...
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Deeksha Singh
Nick Desnoyer
2 months ago
Introducing the 1,000 Flower Collection 🧬🌹 I’m creating 1,000 genetically designed flowers each crafted with new colors, patterns, and shapes. Here’s how I’m making it happen… and how you can join me on this journey 🧵(1/7)
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Laura Ragni
3 months ago
Fresh from the press! For suberin lovers! Work led by @, my former PhD student and now postdoc in the team, with help of
@sarahorvath.bsky.social
and in collaboration with
@tonnigrubeandersen.bsky.social
. 🔗 DOI:
doi.org/10.1016/j.ce...
1/4
#PlantScience
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Deeksha Singh
European Suberin Network
3 months ago
Another Suberin paper on the role of MYB68 in the cork from
@lauraragni.bsky.social
team In collaboration with
@tonnigrubeandersen.bsky.social
www.cell.com/cell-reports...
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Members of the MYB68 subclade orchestrate cork differentiation by regulating stem cell proliferation and suberin deposition
Molina et al. show that transcription factors of the MYB68 subclade promote cork differentiation in the Arabidopsis root. On the one hand, they activate suberin biosynthesis and polymerizing enzymes; ...
https://www.cell.com/cell-reports/fulltext/S2211-1247%2825%2900819-8
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Deeksha Singh
Ari Pekka Mähönen
4 months ago
How plants sense injury in their barrier tissue, periderm? Painstakingly detailed and amazing work by post doc Hiroyuki Iida shows that wounding is sensed by the diffusion of two gases: ethylene and oxygen.
@treebiocoe.bsky.social
@erc.europa.eu
1/x 🧵
www.nature.com/articles/s41...
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Plants monitor the integrity of their barrier by sensing gas diffusion - Nature
A study using Arabidopsis shows that plants can monitor the integrity of their outer barriers by sensing gas diffusion, enabling them to initiate wound repair to prevent water loss and pathogen entry.
https://www.nature.com/articles/s41586-025-09223-4
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Deeksha Singh
4 months ago
Happy to share our latest manuscript from our lab in collaboration with
@jeanmichelane.bsky.social
Phosphate deficiency reduces nodule formation through a Phosphate Starvation Response -Like protein in Phaseolus vulgaris url:
academic.oup.com/pcp/article/...
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Deeksha Singh
Sebastian Schornack
4 months ago
Plz repost. Fresh Preprint led by
@alexguyon.bsky.social
When a pathogen pushes into a cell already occupied by a symbiotic fungus, things change. New membrane phospholipids at pathogen haustoria! This may impact immune receptor positioning & defense secretion. - And the roots are more resistant!
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Alex Guyon
4 months ago
1/🚨 New preprint alert! Can mutualists and pathogens co-colonise the same living plant cell and what does that do to the plant membranes that surround these microbes?
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Deeksha Singh
Oded Rechavi
4 months ago
Scientists have plenty of other examples
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Deeksha Singh
Ari Pekka Mähönen
7 months ago
It's out! Detailed transcriptome atlas of mature Arabidopsis root undergoing secondary growth. Fantastic work by Munan Lyu and Hiroyuki Iida + other lab members, wonderful collab with
@bertderybel.bsky.social
lab on the scRNAseq analysis.
@treebiocoe.bsky.social
1/x
www.nature.com/articles/s41...
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The dynamic and diverse nature of parenchyma cells in the Arabidopsis root during secondary growth - Nature Plants
A combination of lineage tracing and single-cell RNA sequencing reveals how xylem and phloem parenchyma cells in the secondary tissue of Arabidopsis root mature gradually. Upon root barrier injury, th...
https://www.nature.com/articles/s41477-025-01938-6
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Deeksha Singh
IRBV
7 months ago
🧪 New Paper Alert New publication in
@natureplants.bsky.social
by
@routierlab.bsky.social
and
@kierzkowskilab.bsky.social
on how mechanical interaction between tissue layers shapes organ development in plants. 🌱 Learn more 👉
rdcu.be/efad3
@fasudem.bsky.social
@umontreal.ca
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Mechanical interactions between tissue layers underlie plant morphogenesis
Nature Plants - Anthers, the male reproductive organs in plants, are a model to explore the establishment of complex three-dimensional shapes. Live imaging, genetics and modelling reveal an active...
https://rdcu.be/efad3
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Deeksha Singh
Bipin Pandey
4 months ago
Happy to see this paper
www.science.org/doi/10.1126/...
in
@science.org
showing how ROS regulate auxin signalling and control root branching
@uniofnottingham.bsky.social
& Durham University
@hydrosensing.bsky.social
@ukri.org
@erc.europa.eu
Many congratulations to the team!
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Deeksha Singh
Soham Mukhopadhyay
5 months ago
🚨Introducing
biosearch.chat
– a new literature search tool that scans Europe PMC/PubMed and quickly summarizes the key findings with AI. Shoutout to
#GoogleGemini
for enabling us to 'vibe code' our ideas into working tools! Pls report any issues you encounter.
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Deeksha Singh
Yasin Dagdas
5 months ago
Scientists are…
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Deeksha Singh
Moritz K. Nowack
5 months ago
Stomatal transpiration and rapid programmed cell death ☠️ triggered by lowered ambient humidity causes anther tissue collapse for effective pollen release ! Happy to be part of this great PNAS story with
@kampova.bsky.social
, Matyáš Fendrych, and
@svosolsobe.bsky.social
!
www.pnas.org/doi/10.1073/...
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Ziv Aardening
11 months ago
Now online! The whole and its parts: cell-specific functions of brassinosteroids We review how recent discoveries in the field of brassinosteroid signaling provide new insights into its role in shaping organ growth across cell layers
#plantscience
www.cell.com/trends/plant...
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The whole and its parts: cell-specific functions of brassinosteroids
Brassinosteroid (BR) phytohormones operate at both the cellular and organ levels, and impart distinct transcriptional responses in different cell types and developmental zones, with distinct effects o...
https://www.cell.com/trends/plant-science/fulltext/S1360-1385(24)00283-8
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