Klaus Schlaeppi
@kschlaeppi.bsky.social
📤 743
📥 237
📝 22
Interested in plant root microbiome interactions. University of Basel
https://duw.unibas.ch/en/pmi/
pinned post!
updated preprint: Intriguingly, Arabidopsis responded with both, improved growth and enhanced defence to a maize-conditioned soil microbiome, and this dual microbiome feedbacks were mediated by priming of the defences. Credits to Katja Stengele et al.!
www.biorxiv.org/content/10.1...
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Benzoxazinoid-mediated microbiome feedbacks enhance Arabidopsis growth and defense
Plants modulate their surrounding microbiome via root exudates and this conditioned soil microbiome feeds back on the performance of the next generation of plants. How plants can perceive this altered...
https://www.biorxiv.org/content/10.1101/2024.10.21.619081v2
2 months ago
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reposted by
Klaus Schlaeppi
2 days ago
EPSO 6th Workshop on Plants and Microbiomes, Malaga 3.11.2025 – success and outcome.
bit.ly/43jUtLg
#PlantScience
#SDG
#HorizonEU
#biodiversity
#EUFarm2Fork
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EPSO 6th Workshop on Plants and Microbiomes, Malaga 3.11.2025 – success and outcome - EPSO
The EPSO Working Group on Plants and Microbiomes held its sixth workshop in Antequera / Malaga on 3.11.2025 which brought together over 100 enthusiastic researchers just ahead of the 6th Plant Microbi...
https://bit.ly/43jUtLg
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reposted by
Klaus Schlaeppi
Marc Somssich
about 1 month ago
Our article "Guns in Rosettes: The Arabidopsis chemical weapons arsenal" is finally published
@plantphys.bsky.social
! You can download the
#OpenAccess
PDF here:
doi.org/10.1093/plph...
But real connoisseurs of
#AntimicrobialCompounds
will want to get the vinyl boxset:
#PlantScience
#PlantImmunity
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reposted by
Klaus Schlaeppi
about 1 month ago
🌱📢46th EPSO seminar for European Plant Scientists: 16/10/2025 at 15.00 CET discussing The impact of ERC funding for Plant Sciences. EPSO members register, suggest themes, senior and junior speakers for spring seminars 👉http://bit.ly/3WpPYuC.
#PlantScience
#SDG
#HorizonEU
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reposted by
Klaus Schlaeppi
Kei Hiruma
28 days ago
We’re delighted to share that our paper has been just accepted in PCP! We analyzed fungus–fungus competition that suppresses pathogenic colonization in Arabidopsis roots.Special thanks to Duke, Hiroyuki, Yuki, Nanami, and everyone who contributed!
t.co/obQyD1rzI1
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https://academic.oup.com/pcp/article-abstract/doi/10.1093/pcp/pcaf126/8277635
https://t.co/obQyD1rzI1
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Klaus Schlaeppi
about 1 month ago
A long road to the Cover of Science!
www.science.org/doi/10.1126/...
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Localized glutamine leakage drives the spatial structure of root microbial colonization
Plant roots release exudates to encourage microbiome assembly, which influences the function and stress resilience of plants. How specific exudates drive spatial colonization patterns remains largely ...
https://www.science.org/doi/10.1126/science.adu4235
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Klaus Schlaeppi
Charlotte Joller successfully defended her PhD thesis. Coolness, commitment and talent > very good PhD. Congratulations Charlotte!
#proudPI
about 2 months ago
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reposted by
Klaus Schlaeppi
Katja Stengele successfully defended her PhD thesis. Rational thinking, logic, commitment and talent >>> very good PhD. Congratulations Katja!
#proudPI
about 1 month ago
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reposted by
Klaus Schlaeppi
Molecular Agroecology Lab (EEZ-CSIC)🌱🧬
about 1 month ago
✨🌙 ¡La Noche Europea de los Investigadores ya ha comenzado! Desde la EEZ-CSIC compartimos nuestra ciencia con tres talleres: plantas y bichos, microbiomas y nutrición animal y el mundo oculto visto con microscopía. ¡Visítanos en el stand de la
@eezcsic.bsky.social
! 🔬🌱🐄
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Katja Stengele successfully defended her PhD thesis. Rational thinking, logic, commitment and talent >>> very good PhD. Congratulations Katja!
#proudPI
about 1 month ago
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Charlotte Joller successfully defended her PhD thesis. Coolness, commitment and talent > very good PhD. Congratulations Charlotte!
#proudPI
about 2 months ago
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reposted by
Klaus Schlaeppi
Tonni Andersen
2 months ago
Six years ago, I started at the MPIPZ with a head full of ideas. What a journey. I’m thrilled to share that, from Jan 2026, I will be moving to Zurich as a chaired associate professor at the University of Zurich. A new chapter, and plenty of roots still to grow. Can’t wait for the adventure ahead!
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reposted by
Klaus Schlaeppi
Hiro Nakagami
2 months ago
Congratulations Tonni🍻 Gonna miss you
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updated preprint: Intriguingly, Arabidopsis responded with both, improved growth and enhanced defence to a maize-conditioned soil microbiome, and this dual microbiome feedbacks were mediated by priming of the defences. Credits to Katja Stengele et al.!
www.biorxiv.org/content/10.1...
loading . . .
Benzoxazinoid-mediated microbiome feedbacks enhance Arabidopsis growth and defense
Plants modulate their surrounding microbiome via root exudates and this conditioned soil microbiome feeds back on the performance of the next generation of plants. How plants can perceive this altered...
https://www.biorxiv.org/content/10.1101/2024.10.21.619081v2
2 months ago
0
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SynCom of maize root bacteria: in team work, they detox differently. Interacting they redirect the metabolisation to an alternative degradation product. Credits:
@lisathoenen.bsky.social
, Dr. Christine Pestalozzi & teams
@unibas.ch
and
@unibe.ch
.
journals.asm.org/doi/10.1128/...
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Synthetic communities of maize root bacteria interact and redirect benzoxazinoid metabolization | mSphere
We investigated how maize root bacteria—alone or in community—tolerate and metabolize antimicrobial compounds of their host plant. We found that the capacity to metabolize such a compound impacts bact...
https://journals.asm.org/doi/10.1128/msphere.00159-25
3 months ago
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www.unibas.ch/en/Research/...
[some self-promo 🙈]
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How Plants communicate with the Soil Microbiome
Bacteria and fungi in the soil have a major influence on plant growth. Plant researcher Klaus Schläppi is working to understand the biological mechanisms behind this interaction − knowledge that could...
https://www.unibas.ch/en/Research/Research-in-Basel/Researchers/Portraet-Klaus-Schlaeppi.html
3 months ago
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reposted by
Klaus Schlaeppi
Marc Somssich
4 months ago
📜 A TNL receptor mediates microbiome feedbacks in Arabidopsis 🧑🔬
@henryjvr.bsky.social
,
@schandry.bsky.social
, Claude Becker, Hiroaki Adachi,
@kschlaeppi.bsky.social
, et al. 📔
@biorxiv-plants.bsky.social
🔗
www.biorxiv.org/content/10.1...
#️⃣
#PlantScience
#PlantImmunity
#PlantMicrobiome
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A TNL receptor mediates microbiome feedbacks in Arabidopsis
Plant performance depends on the soil microbiome. While microbiome feedbacks are well documented, the mechanisms by which plants perceive and mediate these feedbacks remain unclear. We established a f...
https://www.biorxiv.org/content/10.1101/2025.02.25.640125v2
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Updated preprint: MMF1 is "a microbiota receptor” through which Arabidopsis plants perceive their soil microbiome. Perception optimises root microbiome composition, immune status and ultimately leads to better growth.
www.biorxiv.org/content/10.1...
loading . . .
A TNL receptor mediates microbiome feedbacks in Arabidopsis
Plant performance depends on the soil microbiome. While microbiome feedbacks are well documented, the mechanisms by which plants perceive and mediate these feedbacks remain unclear. We established a f...
https://www.biorxiv.org/content/10.1101/2025.02.25.640125v2
4 months ago
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reposted by
Klaus Schlaeppi
5 months ago
🎯EPSO Contributions from plant research and innovation to EU circular regenerative and competitive
#Bioeconomy
– position paper from
#PlantFactories
,
#Plants&Microbiomes
and
#Horticulture
Working Groups.
bit.ly/449vwSd
.
#PlantScience
#SDG
#HorizonEU
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reposted by
Klaus Schlaeppi
Sebastian S. Cocioba
5 months ago
Here's a tutorial I wrote on how I design detection and cloning primers using Primer3. Hopefully it's helpful for students. 💚
binomicalabs.notion.site/PCR-Primer-D...
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PCR Primer Design | Notion
Prerequisite Protocols
https://binomicalabs.notion.site/PCR-Primer-Design-8f1f888f50a0403a87bdce20e37840f2?source=copy_link
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reposted by
Klaus Schlaeppi
Sara Mitri
5 months ago
We are recruiting a tenure-track assistant professor in molecular microbiology in our department in Lausanne! Do consider appyling!!
add a skeleton here at some point
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reposted by
Klaus Schlaeppi
Greg Goldsmith
6 months ago
This is built on the foundation of one of the most compelling long-term forest studies in Europe. This will be one very lucky postdoc...
add a skeleton here at some point
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Are you interested in the ecology of deep soil forest fungi? We are hiring a postdoc (3y). More information here:
jobs.unibas.ch/offene-stell...
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Universität Basel: Postdoctoral researcher: Ecology of deep soil forest fungi
The research group 'Plant Microbe Interactions' at the Department of Environmental Sciences, University of Basel (https://duw.unibas.ch/en/pmi/) is welcoming applications for a postdoctoral researcher...
https://jobs.unibas.ch/offene-stellen/postdoctoral-researcher-ecology-of-deep-soil-forest-fungi/92e49ebd-bf2f-424b-8ace-5286dd35f453
6 months ago
0
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reposted by
Klaus Schlaeppi
University of Basel
6 months ago
In order for trees to grow, they need to control their water balance meticulously. A study by researchers
@unibas.ch
&
@tum.de
shows how trees react to drought – and revises previous perceptions.
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Growth before photosynthesis: how trees regulate their water balance
In order for trees to grow, they need to control their water balance meticulously. A study by the University of Basel shows how trees react to drought – and revises previous perceptions.
https://www.unibas.ch/en/News-Events/News/Uni-Research/Growth-before-photosynthesis-how-trees-regulate-their-water-balance.html
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reposted by
Klaus Schlaeppi
Ursula von der Leyen
6 months ago
We will put forward a 500 million package for 2025-2027 to make Europe a magnet for researchers. As well as ambitious proposals for R&I in the next EU budget. We will also offer the best and brightest the right incentives to come to Europe ↓
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reposted by
Klaus Schlaeppi
Leonie Luginbuehl
6 months ago
Join our group (
www.luginbuehllab.com
) at
@camplantsci.bsky.social
! Are you excited about mycorrhiza, (single-cell) transcriptomics, carbon physiology, and the model crop rice? We have a 2-year postdoc position available, starting ASAP. Closing date 23rd May 2025!
www.jobs.cam.ac.uk/job/51214/
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Research Assistant / Research Associate (Fixed Term) - Job Opportunities - University of Cambridge
Research Assistant / Research Associate (Fixed Term) in the Department of Plant Sciences at the University of Cambridge.
https://www.jobs.cam.ac.uk/job/51214/
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Productivity of supplementary data 😂
7 months ago
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reposted by
Klaus Schlaeppi
Marc Somssich
7 months ago
📜 Marchantia polymorpha Defense Against Snail Herbivory 🧑🔬 Fabian Schweizer,
@isabelmonte.bsky.social
, Roberto Solano, Philippe Reymond 📔 Plant-Environment Interactions 🔗
onlinelibrary.wiley.com/doi/10.1002/...
#️⃣
#PlantScience
#PlantImmunity
#PlantEvoMPMI
#Marchantia
#Herbivory
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Marchantia polymorpha Defense Against Snail Herbivory
Ancestral liverwort species were already equipped with the jasmonate pathway to fend off herbivores. However, insect appearance on earth does not fit with the estimated age of bryophytes, as they pro...
https://onlinelibrary.wiley.com/doi/10.1002/pei3.70052
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reposted by
Klaus Schlaeppi
Daniel Croll
7 months ago
Excited to do a postdoc in beautiful Neuchatel / Switzerland🇨🇭? We have several postdoc positions open at the moment! Check our website for the full ads here:
pathogen-genomics.org/jobs
Happy to answer any question and please spread the word to anyone who might be interested!
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Klaus Schlaeppi
Matt Agler
7 months ago
New paper in Microbiome (with fancy summary video):
doi.org/10.1186/s401...
1. Many bacteria can realistically transition from soil to mature leaves. 2. Early stages post-germination shape colonization processes and diversity. 3. P-M-M interactions affect mostly deterministic colonzers. Enjoy!
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Deterministic colonization arises early during the transition of soil bacteria to the phyllosphere and is shaped by plant–microbe interactions - Microbiome
Background Upon seed germination, soil bacteria are activated to transition to the plant and eventually colonize mature tissues like leaves. These bacteria are poised to significantly influence plant ...
https://doi.org/10.1186/s40168-025-02090-1
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reposted by
Klaus Schlaeppi
Max Planck Institute for Chemical Ecology
7 months ago
PhD project offer: Plant secondary metabolites and the barley microbiome Supervisors: Dr. Matthew Agler, FSU
www.bio.uni-jena.de/en/18304/pla...
; Dr. John D'Auria, IPK Gatersleben More information:
www.ice.mpg.de/402506/Proje...
Apply now:
jobs.ice.mpg.de/en/jobpostin...
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Junior Research Group Plant Microbiosis
Dr Matthew T. Agler
https://www.bio.uni-jena.de/en/18304/plant-microbiosis
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reposted by
Klaus Schlaeppi
Hiro Nakagami
7 months ago
Tracing evolution in Plants’ Transition to Land
www.mpipz.mpg.de/5683322/pr-n...
@mpipz.bsky.social
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Tracing evolution in Plants’ Transition to Land
https://www.mpipz.mpg.de/5683322/pr-nakagami-2025-04
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7 months ago
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Gesucht: Administrative Assistenz für die Forschungsgruppe «Pflanzen Mikroben Interaktionen»
jobs.unibas.ch/offene-stell...
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Universität Basel: Administrative Assistenz
Für das Departement Umweltwissenschaften (DUW) der Universität Basel suchen wir eine administrative Assistenz für das Sekretariatsteam mit Schwerpunkt der Tätigkeit in der Forschungsgruppe «Pflanzen M...
https://jobs.unibas.ch/offene-stellen/administrative-assistenz/39c8e22c-2246-4a3e-bfd2-88d9e6a586a1
7 months ago
0
3
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reposted by
Klaus Schlaeppi
Ren Ujimatsu
7 months ago
Thrilled to share my first paper published at Current biology!! We found that the expression level of one single transcription factor converts beneficial root endophyte into pathogenic guy😈 (1/8)
www.cell.com/current-biol...
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A fungal transcription factor converts a beneficial root endophyte into an anthracnose leaf pathogen
Endophytic fungi colonize healthy plant tissues without disease. Ujimatsu et al. reveal that the fungal transcription factor CtBOT6 triggers the virulence of a root-associated beneficial endophyte by ...
https://www.cell.com/current-biology/fulltext/S0960-9822(25)00311-2
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reposted by
Klaus Schlaeppi
Stéphane Hacquard
7 months ago
We present MetaFlowTrain, an easy-to-build, highly parallelized, and cost-effective fluidic system for studying microbial exometabolites and their roles in modulating microbe–microbe–host interactions. Kudos to
@chesneau-g.bsky.social
@mpipz.bsky.social
Give it a try:
www.nature.com/articles/s41...
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reposted by
Klaus Schlaeppi
Silvia Ramundo
8 months ago
Interested in photosynthetic organisms? Looking for a space to focus on research and kick-start your journey as a group leader? We’d love for you to join us. We offer an incredibly competitive package—on par with about 2 ERC grants for 8 years—and a collaborative environment unlike anywhere else 1/2
add a skeleton here at some point
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reposted by
Klaus Schlaeppi
University of Basel
8 months ago
In vertebrates, the skeleton of different regions of the body arises from different precursor cells. Researchers
@tschopplab.bsky.social
have now discovered that these skeletal cells do not just differ in their developmental origin, but also in their gene regulation. 👉
www.unibas.ch/en/News-Even...
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reposted by
Klaus Schlaeppi
The Plant Cell
8 months ago
#ASPBPlantCellTuesday
#ICYMI
add a skeleton here at some point
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reposted by
Klaus Schlaeppi
Ryohei Thomas Nakano (Hokudai)
8 months ago
Extremely enjoyed the time with my former
@mpipz.bsky.social
colleagues, discussing about the root immunity and its link to leaf immunity at the JSPP conference
@plantcellphysiol.bsky.social
. Thanks a lot
@kenichitsuda.bsky.social
and
@kschlaeppi.bsky.social
for joining us!!
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Credits to
@lisathoenen.bsky.social
, Dr. Christine Pestalozzi and the team at the University of Bern.
add a skeleton here at some point
8 months ago
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Interestingly, we found that interacting bacteria redirected the metabolisation of the antimicrobial compound to an alternative degradation product. In team work they do a different thing!.
add a skeleton here at some point
8 months ago
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Preprint alert: We investigated how maize root bacteria - alone vs in community - tolerate and metabolise antimicrobial compounds of their host plant. The capacity to metabolise such a toxin impacted community size, structure and importantly, fitness. Happy reading...
www.biorxiv.org/content/10.1...
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Synthetic communities of maize root bacteria interact and redirect benzoxazinoid metabolization
Plant roots are colonised by diverse microbial communities. These communities are shaped by root exudates including plant specialized metabolites. Benzoxazinoids are such secreted compounds of maize. ...
https://www.biorxiv.org/content/10.1101/2025.03.12.642850v2
8 months ago
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reposted by
Klaus Schlaeppi
Lisa Thönen
8 months ago
Finallly, the last chapter of my PhD thesis made it out as a preprint 🌽🧫🎉 In a community maize bacteria convert benzoxazinoids to different metabolites than when grown alone
www.biorxiv.org/content/10.1...
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Synthetic communities of maize root bacteria interact and redirect benzoxazinoid metabolization
Plant roots are colonised by diverse microbial communities. These communities are shaped by root exudates including plant specialized metabolites. Benzoxazinoids are such secreted compounds of maize. ...
https://www.biorxiv.org/content/10.1101/2025.03.12.642850v2
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reposted by
Klaus Schlaeppi
Marc Somssich
8 months ago
📜 A TNL receptor mediates microbiome feedbacks in Arabidopsis 🧑🔬
@henryjvr.bsky.social
,
@schandry.bsky.social
, Claude Becker,
@kschlaeppi.bsky.social
, et al. 📔
@biorxiv-plants.bsky.social
🔗
www.biorxiv.org/content/10.1...
#️⃣
#PlantScience
#PlantImmunity
#PlantMicrobiome
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A TNL receptor mediates microbiome feedbacks in Arabidopsis
Plant performance depends on the soil microbiome. While microbiome feedbacks are well documented, the mechanisms by which plants perceive and mediate these feedbacks remain unclear. We established a f...
https://www.biorxiv.org/content/10.1101/2025.02.25.640125v1
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reposted by
Klaus Schlaeppi
Lisa Thönen
9 months ago
Nice article about our work 🧫🌽🌾
add a skeleton here at some point
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reposted by
Klaus Schlaeppi
Davide Bulgarelli
9 months ago
Good stuff
@kschlaeppi.bsky.social
and co-workers! Is it the dawn of a new era for NLRs biology? You could have waited a few more months though, you know that for people working with crops validation takes longer :)
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reposted by
Klaus Schlaeppi
Henry Janse van Rensburg
9 months ago
Excited to share my postdoctoral work from Basel! We discovered a “microbiota receptor” in Arabidopsis that optimises plant immunity, the root microbiome composition, eventually leading to enhanced plant growth.
add a skeleton here at some point
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reposted by
Klaus Schlaeppi
9 months ago
📌Vacancy at the University of Amsterdam! Join us at the Green Life Sciences with three open positions by my colleagues. 🌱🌻 1/3 PhD position on "Microbial Host Preference in Plant Stress Resilience" in the group of Dr. Kathrin Wippel:
werkenbij.uva.nl/en/vacancies...
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Vacancy — PhD Candidate Microbial Host Preference in Plant Stress Resilience
Are you an early-career researcher with a passion for plant science? Would you like to apply your enthusiasm to a highly relevant project in the field of plant-microbiome interactions? Then we have th...
https://werkenbij.uva.nl/en/vacancies/phd-candidate-microbial-host-preference-in-plant-stress-resilience-netherlands-13738
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Preprint alert: Here we report MMF1 - "a microbiota receptor” - through which Arabidopsis plants perceive their soil microbiome. Perception optimises root microbiome composition, immune status and ultimately leads to better growth. Happy reading...
www.biorxiv.org/content/10.1...
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A TNL receptor mediates microbiome feedbacks in Arabidopsis
Plant performance depends on the soil microbiome. While microbiome feedbacks are well documented, the mechanisms by which plants perceive and mediate these feedbacks remain unclear. We established a f...
https://www.biorxiv.org/content/10.1101/2025.02.25.640125v1
9 months ago
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reposted by
Klaus Schlaeppi
University of Basel
9 months ago
Pesticides and excessive fertilizers harm crops and the environment. As an alternative, farmers can already buy “biologicals” - bacteria, fungi or mixes thereof. But recent research by
@kschlaeppi.bsky.social
and his team reveals why these often fall short and offers insights on improving them.
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Plant’s favorite bacteria to promote crop yield.
To optimize their growth, plants shape the bacterial community on and around their roots. Finding out how they do so is key to develop new microbiological products for greater sustainability in agricu...
https://www.unibas.ch/en/News-Events/Uni-Nova/Uni-Nova-144/Uni-Nova-144-Plant-s-favorite-bacteria-promote-crop-yield.html
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