If you have an interest in mixing computation and experiments to understand microbial evolution (for example antibiotic resistance) and you think you might be a good fit for a postdoc in my lab, reach out. If it seems it might be a fit I’m happy to help you frame it as AI for Biology per this call

Interested in eco-evolutionary feedbacks? Microbial experimental evolution? Pleiotropy? Filamentous phages?? Check out our latest preprint, now up on BioRxiv! biorxiv.org/content/10.6... For a quick summary, peep the thread below...🧵 (1/10)

Now published in PLoS Pathogens! #microsky #phagesky journals.plos.org/plospathogen...

Looking for a paid summer research experience? Apply to MSU’s Extreme Biofilms REU and work on cutting-edge biofilm science in extreme environments. No prior research experience needed. #MicroSky #PhageSky

Congratulations Nanami on your PhD thesis and defense, a tour de force! Deepest thanks for leading our lab into the wonders of phage biology 🧪 🧬🦠

Happy to announce that I successfully defended my PhD thesis today! Thank you those who attended in person and virtually.

Excellent defense by @nanamikubota.bsky.social ! And I’m proud to see her love of integrating viruses even when working in a bacteria lab. 😉

A wonderful commentary by @asherleeks.bsky.social and @sociovirology.bsky.social on our recent work with P. aeruginosa filamentous cheater miniphages! @vscooper.micropopbio.org @shellyscrib.bsky.social

Congratulations to @nanamikubota.bsky.social in the @vscooper.micropopbio.org lab on her upcoming thesis defense! 👏

What is the best strategy to win any contest? Eliminate your opponents of course. Recently, my friend @fernpizza.bsky.social showed how plasmids compete intracellularly (check out his paper published in Science today!). With @baym.lol, we now know they can fight. www.biorxiv.org/content/10.1...

Hot off the press! Our latest paper led by @fernpizza.bsky.social, understanding how plasmids evolve inside cells. These small, self-replicating DNA circles live inside bacteria and carry antibiotic resistance genes, but also compete with one another to replicate. 1/ www.science.org/doi/10.1126/...

I will be defending on Dec 8th at 1pm Eastern Time! I will be sharing both published and new work. If filamentous phages, Pseudomonas aeruginosa, evolution, and active lysogeny sound cool: It is hybrid, and the zoom link info can be found on the webpage. 🔗 calendar.pitt.edu/event/filame...

I am so excited to have this published today detailing a new system for growing biofilms and observing the resulting populations (stress on the plural!) in chemostats! A chemostat-based model for growing bacterial biofilms | Microbiology Spectrum journals.asm.org/doi/10.1128/...

@prczhaoyansong.bsky.social’s deep dive into the dark matter of compost communities is now out 🎉 Genomic islands hijack jumbo phages—whose capsids enable transfer of large tracts of DNA—shedding new light on the scale & scope of phage-mediated gene flow 😎 www.pnas.org/doi/10.1073/...

I am super excited to announce that we have a tenure-track faculty position in biophysics open in the Department of Physics at Carnegie Mellon! 🧪 Interfolio link: apply.interfolio.com/174360 PLEASE, share widely across the blue skies! Let me briefly explain what we're looking for: 1/10

Two tenure-track faculty positions open in our department: 1) Microbial Ecology and Evolution careers.rpi.edu/en-us/job/49... 2) Cellular Neuroscience careers.rpi.edu/en-us/job/49... Join our collaborative, interdisciplinary community, which has proved to be a fantastic place to start a lab!

Do plasmids really move around that much? Well, maybe not always Thrilled to have contributed to this story with two of my favourite microbiologists: @jrpenades.bsky.social & @sanmillan.bsky.social This great work was led by Akshay Sabnis & @wfigueroac3.bsky.social www.cell.com/cell-reports...

#PhD Position: Interested in the evolutionary and ecological impacts of whole genome duplication? Join Dr. Tia-Lynn Ashman @drtialynn.bsky.social and I at the U. of Pittsburgh, to test what drives the competitive outcomes between diploids and #polyploids Details: shorturl.at/nQ8UW

Excited to see our recent paper get covered by Pitt media!

Very happy to share that I will be starting as an Assistant Professor in the department of Biological Sciences at the University of South Carolina in January! My group will be working on environmental phage ecology and evolution, and I am recruiting for the upcoming year (more info below).

DYK most P. aeruginosa carry filamentous phage(s) that don't need to kill the cell to reproduce? We 👉🏻@nanamikubota.bsky.social show that these Pf phages can go ROGUE. "Filamentous cheater phages drive bacterial and phage populations to lower fitness" 🔗 authors.elsevier.com/c/1lt5I3QW8S...

Published in Current Biology! P. aeruginosa can use its filamentous phage to inhibit competitors but high phage production is susceptible to cheater miniphage invasion. Subsequent phage tragedy of the commons can lower bacteria and phage fitness. Link: authors.elsevier.com/c/1lt5I3QW8S...

🚨 Microbiologists! We are recruiting Assistant / Associate Professors in 3 collaborative areas of our U. Pittsburgh School of Medicine. 1) MMG (my dept): fundamental research in med micro 2) Peds ID / I4Kids institute 3) Center for Vaccine Research 🔗 to all 3 w/info: www.linkedin.com/posts/vaughn...

A reminder that the my department has an ongoing faculty search! Would love to have more colleagues here!

Can CRISPR-Cas systems target any phage? Yes, no, it depends? What does it depend on? The second paper from my PhD came out today in a special issue of Phil Trans B on the ecology and evolution of bacterial immune systems doi.org/10.1098/rstb...

Excited to share new #program, STEPS, which can simulate #dynamics of the E. coli Long-Term Evolution Experiment (#LTEE) or other microbes in serial transfer regime. telliamedrevisited.wordpress.com/2025/08/12/s... STEPS developed by @devinmlake.bsky.social, Zachary Matson, Minako Izutsu, and me.

Feels surreal to say but: I'm hiring! If you are or know anyone interested in looking at the evolution of phage resistance using A. baumannii and natural transformation, then this might be for you www.jobbnorge.no/en/available...

Congratulations @anshika22.bsky.social and Anna Zemke on this useful paper demonstrating superiority of full length 16S sequencing for profiling respiratory samples from tracheostomy patients. h/t @seqcoast.bsky.social journals.asm.org/doi/10.1128/...

Here's our new broad review on the extended mobility of plasmids, about all mechanisms driving and limiting their transfer. From conjugation to conduction, phage-plasmids to hitchers, molecular to evolutionary dynamics, ecology to biotech. The state of affairs. 1/9 academic.oup.com/nar/article/...

New review article with @mmdesai.bsky.social is out today! Grateful for the opportunity to contribute something we hope will serve the community well

Nature research paper: Prophages block cell surface receptors to preserve their viral progeny go.nature.com/3IwINxb

POSTDOC🚨 With the excellent @anshika22.bsky.social moving to UCI 🥲Anna Zemke and I are again recruiting a postdoc on the HOST-PATHOGEN BIOLOGY of TRACHEOBRONCHITIS. This is a microbiome-device-host immunity problem of broad significance. Contact Dr. Zemke (zemkea at upmc dot edu) if interested! 👇🏻

The Xue lab at UC Irvine is looking for a staff scientist to support our work investigating how microbes interact and evolve in the gut microbiome! Open to a wide range of previous experience levels, see ad for more. recruit.ap.uci.edu/JPF09601

Fellow Cooper lab member, Alecia will be defending next week! Go Alecia!! 💪🎉

Preprint: “Structural modeling reveals viral proteins that manipulate host immune signaling” Using AI-guided structural modeling, we find new families of viral proteins that sequester or cleave host immune signaling molecules Congrats Nitzan Tal! www.biorxiv.org/content/10.1...

GRC Micro Pop Bio is one of my favorite meetings. I had a blast! Met some awesome people (+ wildlife) and had many engaging conversations. Definitely would like to return in the future. Shoutout to Pia for being an awesome roommate and for taking a photo of me catching grasshoppers during the break.

This art is now immortalized on the Cooper lab slack group 👍 @satterwhite.bsky.social

Picture of me digesting all the cool science discussions and suggestions at the GRC Micro Pop Bio

There is one month left to apply for our Simons Graduate Fellowships in Ecology and Evolution! These awards provide support for students entering U.S.-based Ph.D. programs with a plan to perform research in #ecology and #evolution. www.simonsfoundation.org/grant/simons... #science

🚨🚨New paper out in @natcomms.nature.com!! Come for the first large-scale analysis of plasmid copy number across species, stay for one of the most intriguing results of my lab: universal scaling laws in plasmid biology! 📈🧬 👉 www.nature.com/articles/s41...

Looking forward to seeing everyone, new and old, at the Microbial Population Biology GRS + GRC in just a couple days! go.bsky.app/GGxRjzC

One of my favourite serendipitous results from the lab came about because we were long-read sequencing bacterial: Vibrio cholerae, which is "supposed to" have TWO circular chromosomes (3 + 1 million base pairs) often has just ONE fused chromosome (4 Mbp). www.nature.com/articles/s41... (1/n)

1/27 We have a new paper out! Turns out that snowflake yeast have been hiding a secret from us - they've evolved a (very!) crude circulatory system. Not with blood vessels or a heart, but through spontaneous fluid flows powered by their metabolism. 🧪🔬 www.science.org/doi/full/10....

Got to grab lunch with a dear phage friend, Tiffany, at ASM Microbe today! @scientiff.bsky.social She had an awesome rapid fire poster talk about phage therapy against P. aeruginosa infection in an elderly person with CF Read the preprint here!: doi.org/10.1101/2025...

Come to my poster 🔬🦠 #ASMicrobe #ASMicrobe2025 #phage #phagesky

Come check out my poster tomorrow at #ASMicrobe in the E&EB section! We found that repressor mutations in Pf prophages sparked a coevolutionary dynamic that resulted in loss of twitch motility and susceptibility to virulent pilus-targeting phage. Would love to chat about all things phage :).

For #ASMicrobe folks - looking forward to a busy phage day on Sunday!

Turner Lab representation at #ASMicrobe #ASMicrobe2025 (1/5) Postbac Matthew Davidson will present a poster about phage Woody 🪵 #newPhageAlert Matthew will be applying for grad school soon!

Congrats @drjdennehy.bsky.social on becoming a fellow!!

Cooper lab is at #ASMicrobe ! See the thread for a list of all our presentations. Interested in filamentous cheater phages of P. aeruginosa? I'll be talking about them tomorrow Friday from 9:45-10am at the "Who Runs the World? Phage" session (408B, LACC)