We recently published Metagraph [1] & polished the website to made it usable/stable/efficient for more users. Check out AI summary/tax. id feature [2]. Search in 17PB indexed sequences takes ≈3min on single server. Try! [1] www.nature.com/articles/s41... [2] metagraph.ethz.ch/results?sear...

The Metagraph paper is out in Nature; it showed up in my feeds today! Congratulations to Mikhail Karasikov, @gxxxr.bsky.social, @akkah21.bsky.social and all of the other authors (whom I'd love to follow on Bluesky if I can find you ;P) www.nature.com/articles/s41...

After years of research and continuous refinement, we’re thrilled to share that our paper on the MetaGraph framework — enabling Petabase-scale search across sequencing data — has been published today in Nature (www.nature.com/articles/s41...)

This manuscript on the reproducibility of splicing neoepitope prediction took us a while. We find that subtle choices in how one exactly generates and filters neoepitope candidates, creates major differences in the number and identity of the neoepitopes. www.biorxiv.org/content/10.1...

🔬 Toward histopathology 2.0: spatial transcriptomes inferred from routine diagnostic H&E images + a chat interface for cell-resolution histopathology through English language. (1/6)

Just presented our new multimodal histopathology method "SpotWhisperer" at ICML, one of the largest AI conference. SpotWhisperer enables spatially resolved annotation of histopathology images using natural language. We achieved this by "transferring" annotations from transcriptomic data. More soon!

Congrats, great work!

🎉 Yesterday, @alizeepace.bsky.social, our first PhD Fellow of the @eth-ai-center.bsky.social, graduated! She was supervised by ETH AI Center Faculty members Prof. Rätsch @gxxxr.bsky.social and Prof. Schölkopf. Congrats, Dr. Pace! Next, she will join Google DeepMind in Zurich as a Research Scientist.

This is joint work with Bernhard Schölkopf, @gxxxr.bsky.social, and @gioramponi.bsky.social, which we will also be presenting at ICLR 2025 🎉 Link: arxiv.org/abs/2406.18450

I'm excited about a meeting on RNA + AI together with @quaidmorris.bsky.social and @hagentilgner.bsky.social in Ascona, Ticino on May 4-8. We have a great line-up of speakers and room for you to present your work. Please join us if you are into RNA & AI. Registration open www.rna-ai.org.

Great to see ELLIS and EMBL getting closer and working together!

Where RNA Science Meets AI, May 4–8, 2025, Ascona. Invited speakers: @evamarianovoa.bsky.social @fabiantheis.bsky.social @rivaselenarivas.bsky.social, Sterling Churchman, Barbara Treutlein, Rahul Satijia, Registration open www.rna-ai.org @hagentilgner.bsky.social @quaidmorris.bsky.social

Very honored to have been elected an @ellis.eu Scholar in the program for Robust Machine Learning: ellis.eu/programs/rob... What better way to celebrate it than to speak at the ELLIS UnConference in Bad Teinach?

My group is hiring postdoc(s) and I will be at #NeurIPS2024 if you want to talk - send me a DM or find me on Whova! UK-based, 2 year position. We work on AI/ML for health, specifically building and *understanding/explaining* deep (multimodal) models on healthcare data, especially medical imaging.

Nerd humor 🤓 #statisticshumor #cardiosky #medsky

Generative AI’s environmental costs are soaring — and mostly secret