I implemented a CPU and RAM. In Javascript. For a blog.

Some days are harder than others. But at least today was a beautiful sunrise with the Moon and Venus

@imartayan.bsky.social pronounced my name incorrectly. Is it wrong of me to hope that generations of students and bioinformaticians to come will continue to do so? www.youtube.com/watch?v=35Yg...

Welcome to the official Bluesky page of the Institut Pasteur! 🔬 Explore with us the frontiers of biomedical research 🧪 Follow us to uncover groundbreaking discoveries 💡 Share knowledge for global health 🌍 Join a community passionate about progress and open science.

Welcome to institut Pasteur !

Merry lexicographic minimiz... Christmas arxiv.org/abs/2412.17492

Do you want to learn systematic ways in which you can revise your research papers? I've posted a short collection of 4 lectures youtube.com/playlist?lis... 1/n

I extended my fast-minimizers blogpost with the lastest results, providing proper deduplicated minimizers and super-k-mers in 1.65ns/kmer, and canonical kmers in 1.90ns/kmer. Or 5.4s and 6.4s respectively on a human genome. Let me know if you want to use this :) curiouscoding.nl/posts/fast-m...

Nice result to end the day (night*): After discussions with @imartayan.bsky.social, the SIMD minimizer code now also does proper canonical (revcomp) minimizers: ~1ns/bp for fwd minis +0.4ns/bp with collect and dedup +0.6ns/bp with canonical hashes. Super happy how it's only 2x slower in the end!

Very excited to see Movi (by @mohsenzakeri.bsky.social) now out in iScience: www.cell.com/iscience/ful.... Movi builds on the "move structure" pangenome index, a compressed full-text index and close cousin to r-index. Compared to r-index, the move structure is simpler and more cache-efficient.

Congratulations @epcrocha.bsky.social for your CNRS silver medal!

(Francais dans la réponse) [IMPORTANT INFO] I'm splitting my account into 3 pieces: - For science (bioinfo/comp.sci.) [EN]: @yoann.bsky.social - For alt ctrl game creation [FR]: @collectifartefact.bsky.social - Personal random account [EN/FR]: @docteursid.bsky.social

This is now :)

The dpt started a new Primer Method session! The meeting will take place every Monday for 2 months. Today we had @hu-asch.bsky.social discussing interaction effect testing in linear models. Next week @yoann.bsky.social will talk about computing, storing and querying de Bruijn Graph from k-mer!

🧬🔍There are 50 petabases of freely-available DNA sequencing data. We introducing Logan Search which allows you to search for any DNA sequence in minutes, bringing Earth’s largest genomic resource to your fingertips. 🏔️ logan-search.org 🏔️ #Genomics #Bioinformatics #OpenScience

Log Cabin xkcd.com/2891

Salut les amis du ciel bleu. Si demain vous ne faites rien entre 15h et 19h, vous êtes les bienvenus à la Tréso à Malakoff pour jouer à la gameboy avec mon asso Benji et moi. Il paraît même qu'on y fera un tournoi de Tetris avec des cable link !

Matinée réparation de gameboys pockets 🎮