Very cool work. I curious about how a model like this might leverage knowledge of what processes and components are known to be active/present in specific cell types.

STOmicsDB #SpatialTranscriptomics repository Coding-free visualization & re-analysis of published ST datasets (if you have a specific question) 361 datasets 128 tissues 17 species db.cngb.org/stomics/ @narjournal.bsky.social 2023 academic.oup.com/nar/article/...

"Fortunately, cellxgene classes follow an ontology, a robust structure that defines relationships among the labels." 😍 Very cool to see how they leveraged the ontological relationships to refine many labels!

Big CELLxGENE news! No longer just human & mouse data. Now supported: #celegans #zebrafish #drosophila #rat #pig #rabbit and several non-human primates Please see info on how to contribute data: cellxgene.cziscience.com/docs/032__Co...

Another fun CELLxGENE update from this week: We now support ATAC-seq fragments files. You can download the fragments file for all unpaired scATAC-seq datasets and many multiome datasets. More ATAC-seq features (and data) are coming. Happy #DNADay!

Excited to share Ruqian has developed a package for this transcript based niche analysis. Check out the preprint and the package! This is a flexible approach and we're working on extending this for other spatial analyses! @davisjmcc.bsky.social www.biorxiv.org/content/10.1...

New publication 🫁 📊 🔬 ! We performed proteomics and transcriptomics of lung sorted cells from human (0 to 8 years). We discovered new cell markers and pathway modulated during development. A must-read for #teamMassSpec enthusiasts focused on development www.atsjournals.org/doi/abs/10.1...

Cell Population–resolved Multiomics Atlas of the Developing Lung 🔗 tinyurl.com/bdds9z7s

Excited to launch our AlphaGenome API goo.gle/3ZPUeFX along with the preprint goo.gle/45AkUyc describing and evaluating our latest DNA sequence model powering the API. Looking forward to seeing how scientists use it! @googledeepmind

Great faculty opportunities within the Cellular Genomics Programme @sangerinstitute.bsky.social Please share with your networks and do contact me if you would like to find out more sanger.wd103.myworkdayjobs.com/en-US/Wellco...