Zihao Zhu
@zihaozhu.bsky.social
📤 46
📥 103
📝 5
🌾 plant (epi)genomics | ecophysiology | evolution & conservation
reposted by
Zihao Zhu
Lucas Auroux
about 8 hours ago
🌱🧬 "Advances in seed omics" now published in its complete form
@jxbotany.bsky.social
doi.org/10.1093/jxb/...
Covers how omics tech are revolutionising seed research - single-cell and multi-omics integration towards climate-resilient crops. La Trobe (
@lewseylab.bsky.social
) and Zhejiang Uni.
add a skeleton here at some point
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reposted by
Zihao Zhu
Germán Martínez
9 days ago
I am editing a collection on "plant epigenetic regulation" for BMC Plant Biology. If you think that your paper might fit there please contact me or send it through the submission system to our collection:
www.biomedcentral.com/collections/...
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Call for papers - Plant epigenetic regulation
https://www.biomedcentral.com/collections/col3255
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reposted by
Zihao Zhu
Chenxin Li, PhD
21 days ago
MSU is great place to do plant science research. My lab will be a great place to develop new expertise in genomics and plant molecular biology. Application instruction and link:
careers.msu.edu/jobs/researc...
Please email me if you have any questions.
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Research Associate-Fixed Term - East Lansing, Michigan, United States
Position Summary The Li lab in the Department of Plant Biology is recruiting a postdoctoral research associate to work on project(s) in plant molecular biology, biochemistry, and/or genomics. The idea...
https://careers.msu.edu/jobs/research-associate-fixed-term-east-lansing-michigan-united-states-0bc75418-43b8-435e-b517-63fd1f30af5c
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In our recent work on CCT motif genes in the barley pangenome, we emphasize the importance of carefully verifying gene annotations for accurate gene family analysis. 1/5
acsess.onlinelibrary.wiley.com/doi/10.1002/...
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Pangenome insights into structural variation and functional diversification of barley CCT motif genes
Gene family studies require genomic and transcriptomic integration to ensure accurate annotations. Barley pangenome reveals variation and diversification dynamics in CONSTANS, CONSTANS-LIKE, TIMING ...
https://acsess.onlinelibrary.wiley.com/doi/10.1002/tpg2.70098
24 days ago
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reposted by
Zihao Zhu
24 days ago
A chromosome-scale genome assembly of Hordeum erectifolium: genomic, transcriptomic and anatomical adaptations to drought in a wild barley relative
doi.org/10.1101/2025...
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A chromosome-scale genome assembly of Hordeum erectifolium: genomic, transcriptomic and anatomical adaptations to drought in a wild barley relative
Wild crop relatives are valuable genetic resources for improving stress adaptation in cultivated species, but their effective use depends on high-quality reference genomes integrated with phenotypic a...
https://doi.org/10.1101/2025.08.27.672388
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reposted by
Zihao Zhu
John Lovell
about 1 month ago
Determining presence-absence variation (PAV) across reference genomes is a major goal of pangenome analysis. It turns out that A LOT of gene PAV is due to methodological artifacts. We explore the causes of this in soybean and cotton datasets in our recent preprint:
www.biorxiv.org/content/10.1...
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reposted by
Zihao Zhu
Sascha Laubinger
2 months ago
One more week to apply for this exciting Professorship in Plant Sciences at Uni Halle! Join our vibrant plant research community 🌱 Info 👉
wcms.itz.uni-halle.de/download.php...
@unihalle.bsky.social
@snp2prot.bsky.social
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https://wcms.itz.uni-halle.de/download.php?down=70624&elem=3623524
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reposted by
Zihao Zhu
Leibniz IPK
3 months ago
Wild plants can contribute valuable genes to their domesticated relatives. An international research team led by the
@leibnizipk.bsky.social
constructed a pangenome of barley’s closest wild relative, Hordeum bulbosum. Results in
@nature.com
. ➡️PR:
tinyurl.com/45ysmkys
➡️Paper:
tinyurl.com/msm4sudb
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reposted by
Zihao Zhu
Annals of Botany
3 months ago
🎉 Good news! The paper ‘Hormonal regulation of root growth under moderately elevated temperatures’ in
@annbot.bsky.social
by Tilman Jacob and co-authors is now
#free
for a limited time 🧵(1/7) 👉
doi.org/ps8z
@unihalle.bsky.social
@snp2prot.bsky.social
#AoBpapers
#PlantScience
#Roots
#Botany
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reposted by
Zihao Zhu
PlantEvolution 🌱🌾
3 months ago
Temperature is so important for plants that they have come up with many independent temperature sensors. Curious? Read more in this review by former WeigelWorld members Sridevi Sureshkumar & Suresh Balasubramanian.
#plantscience
www.science.org/doi/10.1126/...
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reposted by
Zihao Zhu
Mary Williams @PlantTeaching
4 months ago
Plant Science Research Weekly: June 6, 2/2
plantae.org/plant-scienc...
Stochastic gene expression in development; Cell wall controls cell fate; Transgenerational epigenetic cold tolerance; CCR1 regulates cluster root formation and root development; Molecular epidemiology of wheat powdery mildew
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reposted by
Zihao Zhu
Leibniz IPK
4 months ago
The research group “Plant Architecture” is interested in questions concerning how cereal inflorescences develop and how this contributes to yield formation. If you have a PhD in agriculture, biology or any related field, we have a job offer! ➡️Read more:
tinyurl.com/4fw5rk5y
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reposted by
Zihao Zhu
Trends in Genetics
5 months ago
"Epigenetic perspectives on wheat speciation, adaptation, and development" by Jun Xiao and colleagues FREE till June 28th using this link:
authors.elsevier.com/a/1l3k5cQbJF...
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reposted by
Zihao Zhu
Ronald Pierik
5 months ago
Please share: Two PhD positions in Plant Photobiology in our lab
@w-u-r.bsky.social
in Wageningen University, the Netherlands:
www.wur.nl/en/vacancy/p...
www.wur.nl/en/vacancy/p...
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PhD candidate Plant Light Signalling
https://www.wur.nl/en/vacancy/phd-candidate-plant-light-signalling.htm
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reposted by
Zihao Zhu
bioRxiv Plant Bio
5 months ago
Early Flowering 3 (ELF3) inhibits hypocotyl phototropism in light-grown Arabidopsis seedlings.
https://www.biorxiv.org/content/10.1101/2025.04.09.647958v1
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reposted by
Zihao Zhu
The Plant Journal
6 months ago
𝐍𝐞𝐰 𝐢𝐧𝐬𝐢𝐠𝐡𝐭𝐬 𝐢𝐧𝐭𝐨 𝐫𝐢𝐜𝐞 𝐠𝐫𝐚𝐢𝐧 𝐬𝐢𝐳𝐞! 🌾 Time-course transcriptome & chromatin accessibility analyses reveal the dynamic transcriptional regulation shaping spikelet hull size 📖
doi.org/10.1111/tpj.70141
by Chen et al RNAseq & ATACseq➡️chromatin dynamics&transcription networks shape spikelet hull size
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Time‐course transcriptome and chromatin accessibility analyses reveal the dynamic transcriptional regulation shaping spikelet hull size
In this study, we applied time-course RNA-seq and ATAC-seq analyses to characterize the transcriptional and chromatin accessibility dynamics during the development of the spikelet hull. Our results p...
https://doi.org/10.1111/tpj.70141
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reposted by
Zihao Zhu
Carolin Delker
7 months ago
We are looking for a postdoc to study the impact of interspecific variation of ELF3 at the
#mlu-halle
within the EU-funded research consortium
#ValuePlant
.
www.verwaltung.uni-halle.de/dezern3/Auss...
Please share within your networks!
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https://www.verwaltung.uni-halle.de/dezern3/Ausschr/25_5_2319_25_D_engl.pdf
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reposted by
Zihao Zhu
The Plant Cell
7 months ago
IN BRIEF: Illuminating what lies in darkness: Circadian regulation of hypocotyl growth in Arabidopsis via ELF3 recruitment of demethylases (Julie Robinson)
https://doi.org/10.1093/plcell/koaf018
@ASPB
#PlantScience
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reposted by
Zihao Zhu
Martin Kovacik
7 months ago
We would like to invite you to the Czech Plant Nucleus Workshop 2025. Prague, Czech Republic, from May 26 to 27, 2025. Topic: Structural and functional genomics, Genome stability, Epigenetics, Reproduction, Genome editing. See more at:
olomouc.ueb.cas.cz/cpnw
#CPNW2025
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reposted by
Zihao Zhu
bioRxiv Plant Bio
8 months ago
TAC-C uncovers open chromatin interaction in crops and SPL-mediated photosynthesis regulation
https://www.biorxiv.org/content/10.1101/2025.02.10.637364v1
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reposted by
Zihao Zhu
Tatsuya Nobori
8 months ago
A barley pan-transcriptome reveals layers of genotype-dependent transcriptional complexity
www.nature.com/articles/s41...
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A barley pan-transcriptome reveals layers of genotype-dependent transcriptional complexity - Nature Genetics
A long- and short-read barley pan-transcriptome assembled from 20 diverse barley genotypes offers insights into genotype- and tissue-dependent gene expression and function.
https://www.nature.com/articles/s41588-024-02069-y
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