Dont miss any of our #LongTREC communications at #ISMBECCB2025. Download this flyer to make catching all the latest & hottest long-read transcriptomics research simple. @anaconesa.bsky.social

Day 1 of our #SummerSchool : @carolinamonzo.bsky.social , Satrio Wibowo, Mahmud Sami Aydin and @tianyuanliu.bsky.social introducing participants to #LongReads sequencing technologies, how to design #lrRNAseq experiments, library preparation strategies for #lrRNAseq, mapping, QC and more!

We’re kicking off a video series to showcase our network and its mission. 🎥 Watch @anaconesa.bsky.social introducing our project and why raising sustainability awareness in science is so important. @i2sysbio.es @csic.es #LongCyclingForScience 🚴🌎 #LongReadsTranscriptomics 🔬 #Outreach4Science ✍

Continuing our LongTREC video series, we’re excited to feature Fabio Zanarello from @crg.eu in this next episode. #LongReadsTranscriptomics #LongCyclingForScience #SustainableScience

Next in out #LongTREC video series : Nadja Nolte, Doctoral Candidate working with Kristina Gruden and Marko Petek at the National Institute of Biology in Ljubljana, Slovenia. Check the video to learn more about her project! #LongReadsTranscriptomics #Potato #Poliploidy

Next in the #LongTREC video series, we turn the spotlight to Satrio Wibowo, under the supervision [email protected] at @uniofnottingham.bsky.social, Satrio makes the complex ideas of his project easy to understand with his thoughtful explanation. #LongReadsTranscriptomics #AdaptiveSampling

Next Up in the #LongTREC Series 📽️ : Yalan Bi! Yalan is a LongTREC Doctoral Candidate working with Ralf Herwig at @molgen.mpg.de Yalan shares insights into her research project and her experience as part of the LongTREC network. #LongReadsTranscriptomics #AlternativeSplicing #ProteinInteraction

The LongTREC video series continues with Pablo Angulo Lara, a Doctoral Candidate at @iitalk.bsky.social, where he works under the supervision of Francesco Nicassio. In this video, Pablo talks about his research and its impact. #LongReadsTranscriptomics #aneuploidy #cancer #computationalpipelines

📽️ From 🌞 Valencia: Meet Fabian Jetzinger in the LongTREC Series! Fabian is a Doctoral Candidate at BioBam Bioinformatics, working under the supervision of Stefan Götz, PhD. He is working to make the analysis of long-read RNA sequencing data more user-friendly in #OmicsBox tinyurl.com/nkszjjm5

📽️ Next in the LongTREC Series: Mahmud Sami Aydin! Sami is a Doctoral Candidate at @stockholm-uni.bsky.social , working under the supervision of @ksahlin.bsky.social .In this video, Sami shares his research and his role in the broader LongTREC collaboration across Europe. #AlgorithmDevelopment

🌊 Exploring the Ocean’s Genetic Secrets! Guided by @jm-aury.bsky.social and France Denoeud, @lafucarmen.bsky.social Doctoral Candidate at Genoscope - Centre National de Séquençage, shares how she's using long-reads on marine samples from the Tara Oceans expedition to explore genetic novelty.

🚀 SQANTI-verse Cards are here! ✨ If you want to get'em all, just follow these steps: 1️⃣ Use one of the SQANTI tools from our Github 2️⃣ Generate amazing data and publish your results 3️⃣ Tag us when you share your publication We’ll send you a card! 8 are already available & more are coming 🌌 #SQANTIverse

Original article: www.nature.com/articles/s41... 🧬🖥️ 👩‍🔬 🧪 The article explains how long-read transcriptomics enables the study of isoform expression, discovery of novel RNAs, gene annotation in understudied species, and differential expression between paternal and maternal chromosomes, etc.

I2SysBio @csic.es researchers Ana Conesa @anaconesa.bsky.social, Carolina Monzó @carolinamonzo.bsky.social and Tianyuan Liu @tianyuanliu.bsky.social published an article on #long-read #transcriptomics in Nature Reviews Genomics. More information: i2sysbio.es/communicatio... ⬇️

📢 Exciting news! We will soon open two PhD positions at @i2sysbio.bsky.social @csic.es, in research projects in collaboration with the @bsc-cns.bsky.social. Both are related to tools to simulate biological tissues. Here’s the description of the open positions. #PhDpositions #PhDOpportunities 👇

Time is running out to register for our #LongTREC summer school - Consider joining us in Norwich this summer at the @earlhaminst.bsky.social to level up your #LongReads #bioinformatics #transcriptomics skills. Click the link below to learn more. We're looking forward to meeting you all in July!

La nota de prensa de @dicv.csic.es de @csic.es resume los grandes logros de @conesalab.bsky.social en I2SysBio. Ana Conesa @anaconesa.bsky.social y Carolina Monzó @carolinamonzo.bsky.social explican su artículo publicado en Nature Reviews Genetics sobre la transcriptómica de lecturas largas #RNAseq

El @csic.es analiza una nueva técnica de secuenciación génica que ayudará a descifrar enfermedades como el #cáncer, a conocer mejor la resistencia de las plantas o a examinar virus y bacterias. @anaconesa.bsky.social @carolinamonzo.bsky.social delegacion.comunitatvalenciana.csic.es/el-csic-anal...

Summary of the work of our researchers @carolinamonzo.bsky.social @anaconesa.bsky.social published recently in Nature Reviews Genetics #bioinformatics #transcriptomics #RNAseq 🧬🖥🧪👩‍🔬

FYI: New online! Transcriptomics in the era of long-read sequencing

Big thanks to RSG-Spain for their beautiful post summarising some highlights of our recent review on #LongReads transcriptomics published on @natrevgenet.nature.com. bit.ly/lrRNA-seq @anaconesa.bsky.social @i2sysbio.bsky.social @longtrec.bsky.social

Part 1 and 2 of the Long-read sequencing Special Issues are now live! tinyurl.com/Genome-Res-LRS

Not 1, not 2, but 3 new papers by @conesalab.bsky.social published today in the special issue on long-read sequencing. Find our latest work on SQANTI-reads, genome annotation with lrRNA-seq evidence, and a Perspective in Transcript Divergence. tinyurl.com/GRLong @longtrec.bsky.social

happy to share our new study! 🧪 while exploring how often #sars-cov-2 "repairs" deletions in BA.1, we found significant genome artifacts in GISAID 🤯 we compared with raw reads from ENA + tested the effects in vitro. turns out, data processing matters a lot 📉 check it out!! doi.org/10.1093/ve/v...

ICYMI: New online! Transcriptomics in the era of long-read sequencing

It's so incredibly cool to attend a virtual symposium like #SEH2bioinfo! I also loved giving a talk about #TranscriptDivergency 🫶 Thanks for this cool opportunity #RSGspain

Quieres venir a nuestro lab a trabajar conmigo en un proyecto con long-reads transcriptomics? Estás actualmente matriculado en la universidad en el grado o máster? Ofertamos una de las becas de la conexión @bcbhubcsic.bsky.social !!!

I am so happy to see this manuscript finally out!!! We review and discuss all analysis steps in long reads transcriptomics. Hope the community finds this useful! Hugo thanks to @carolinamonzo.bsky.social and @tianyuanliu.bsky.social for the huge work!!! @longtrec.bsky.social @hitseq.bsky.social

Transcriptomics in the era of long-read sequencing go.nature.com/421ZTJm #Review by @carolinamonzo.bsky.social, Tianyuan Liu & @anaconesa.bsky.social @conesalab.bsky.social @i2sysbio.bsky.social

Free to download for 1 month!

So proud to see @carolinamonzo.bsky.social publishing yet another fantastic paper about transcriptomics. Check out her review that has just been published in Nature Review Genetics ;-) shorturl.at/KeDAf

It's finally out!!!! Our review on long-reads transcriptomics was published in @natrevgenet.bsky.social!! You can have a look at the paper here rdcu.be/efugl! We hope you like it 😀

Introducing MOSim! 🚀 A powerful tool created by @carolinamonzo.bsky.social for simulating bulk & single-cell multi-omics data. Perfect for testing methods & exploring complex biological systems. Available now on GitHub & Bioconductor. #MOSim #MultiOmics github.com/ConesaLab/MO...

My colleagues from I2SysBio @i2sysbio.bsky.social, Ana Conesa @anaconesa.bsky.social and Carolina Monzo @carolinamonzo.bsky.social, published an R package for simulating bulk and #singlecell data from #transcriptomics and #multiomics experiments. Congratulations! 👏 #bioinformatics 🖥🧬 #WomenInSTEM 👩‍🔬

Our researchers Ana Conesa @anaconesa.bsky.social and Carolina Monzo @carolinamonzo.bsky.social published an R package for simulating bulk and #singlecell data from #transcriptomics and #multiomics experiments. Congratulations! 👏 #bioinformatics 🖥🧬 #WomenInSTEM 👩‍🔬 🧪

Wonder what to do with all these 1000s of novel transcripts found by #long-reads sequencing? Adam Frankish, @carolinamonzo.bsky.social and myself discuss this in our @genomeresearch.bsky.social Perspective. @pacbio.bsky.social @nanoporetech.com @longtrec.bsky.social tinyurl.com/274zkdfz

Proud to see this manuscript by @carolinamonzo.bsky.social from @conesalab.bsky.social in collaboration with #SoniaTarazona´s team. MOSIM simulates any type of (multi)epigenomics data that may regulate gene expression. academic.oup.com/bib/article/... @hitseq.bsky.social @iscb-regsys.bsky.social

Thrilled to see our Perspective on long-read transcriptomics Published in Advance in @genomeresearch.bsky.social, with #AdamFrankish and @carolinamonzo.bsky.social. We discuss the opportunities and challenges of LRS to uncover Transcript Divergence and for Genome Annotation. tinyurl.com/bdeteu4j

Proud of Myla Kondratova for the publication of her first first-author paper where she develops a comparative genomics approach for transcription factor binding site prediction in plants, applied to Phaseolus vulgaris, a critical crop for food security @ifas.ufl.edu rdcu.be/eaIQ5

Precioso reportaje sobre el mural que la pintora Clara Gomez Campos me ha pintado en mi barrio, Benimaclet. disfrutabenimaclet.com/2025/01/27/e...

Attention people of Bluesky! Today, we had a double celebration. Alejandro has gotten his paper published #ConesaLab 🧑‍🔬 genome.cshlp.org/content/earl...

New R package developed by @carolinamonzo.bsky.social from @conesalab.bsky.social at I2SysBio for simulation of #Singlecell expression data 🖥🧬🧪 👏👏👏 #bioinformatics #transcriptomics

Today, our amazing postdoc @carolinamonzo.bsky.social gave a seminar on Theoretical and Computational Systems Biology and our classic novel tool MOSim. This R package simulates multi-omics bulk & single-cell gene expression & regulatory mechanisms. Perfect for exploring complex cellular systems! 🔬📊

A giant welcome to our newest lab members!! Carlos and Julen to begin their PhD, Pablo for software development within the Oscars project, and great visitors from LongTREC project!! 🎉💃

🚨 SQANTI3 release alert!! 🚨 v5.3.0 is now LIVE!!! The new release includes better file compatibility, improved parallelization, a wrapper to run QC-filter-resque, and the first release of our newest tool, 👀 SQANTI-reads 🎉! Thanks a lot to the whole team! github.com/ConesaLab/SQ...

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