Kara
@karatsang.bsky.social
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bacterial genomics・antibiotic resistance
https://klebnet.org
reposted by
Kara
Zamin Iqbal
about 2 months ago
Delighted to see our paper studying the evolution of plasmids over the last 100 years, now out! Years of work by Adrian Cazares, also Nick Thomson
@sangerinstitute.bsky.social
- this version much improved over the preprint. Final version should be open access, apols. Thread 1/n
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Kara
Ben Vezina
about 2 months ago
Staggering analysis here linking ciprofloxacin resistance to specific mutations in
#Klebsiella
. In short, using ONLY genotype, one can reasonably predict phenotypic CIP MICs! See Fig 3 (below). Loving the splitting of MIC and disk diffusion data as well.
#AMR
#MicroSky
#IDSky
add a skeleton here at some point
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Kara
Eva Heinz
about 2 months ago
Come for the Klebs resistance data, stay for the DataViz! Massive congratulations to
@karatsang.bsky.social
on juggling such a huge meta-analysis; Ciprofloxacin resistance in Klebsiella pneumoniae: phenotype, genotype, global resistance patterns
#MicroSky
💻🧬
www.biorxiv.org/content/10.1...
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Ciprofloxacin resistance in Klebsiella pneumoniae: phenotype prediction from genotype and global distribution of resistance determinants
BACKGROUND Ciprofloxacin resistant Klebsiella pneumoniae is common or emerging in many geographies, and knowledge of local resistance rates is important for empirical therapy. Whilst there are known K...
https://www.biorxiv.org/content/10.1101/2025.09.24.678318v1
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Kara
Kat Holt
6 months ago
Excited to share the first beta release of AMRrules at
#ABPHM
! (Poster 42 tonight)
interpretamr.github.io/AMRrules
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Kara
Marit Hetland
6 months ago
Happy to share this resource of 568 closed Klebsiella pneumoniae species complex hybrid assemblies, including 1416 plasmids! ⭕️🦠 We hope this will be useful - short reads, long reads, hybrid assembly or all combined - for your own tools/validations 🥳
#Microsky
journals.asm.org/doi/10.1128/...
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Complete genomes of 568 diverse Klebsiella pneumoniae species complex isolates from humans, animals, and marine sources in Norway from 2001 to 2020 | Microbiology Resource Announcements
Klebsiella pneumoniae species complex are opportunistic pathogens that can transmit between humans, animals, and the environment (1). Here, we report hybrid genome assemblies of 578 (568 complete) gen...
https://journals.asm.org/doi/10.1128/mra.00931-24
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Kara
KlebNET-GSP
6 months ago
We are pleased to launch the KlebNET Genomic Epidemiology Consortium! We aim to build a public metadata repository; systematic risk framework for global genomic surveillance; and genomic epi reviews for high-impact
#Klebsiella
clones. Join us here:
klebnet.org/klebnet-gsp-...
#ABPHM25
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KlebNET-GSP
https://klebnet.org/klebnet-gsp-epidemiology-consortium/
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