"Using explainable machine learning for monitoring marine biodiversity" - the latest PCI Genomics recommendation from @raphaelmourad.bsky.social doi.org/10.24072/pci... Based on preprint by Houria Braikia, Sana Ben Hamida, and Marta Rukoz: hal.science/hal-05046103v1

📑 New @genomics.peercommunityin.org recommendation, by @gecko1990.bsky.social genomics.peercommunityin.org/articles/rec... On the work of Pierre Brézellec (2025) The identification of the replicative helicase loader gene dciA within the Helicobacter pylori genome... #OpenAccess #Bioinformatics

New PCI Genomics recommendation from Patrick Forterre: "Interactome study reveals extensive interaction of the SARS-CoV-2 virus spike protein with coiled-coil proteins mostly involved in cytoskeletal functions" - doi.org/10.24072/pci...

All Recommenders are invited to the PCI Genomics Recommenders’ Meeting! We will present our goals and discuss possible ways to improve user experience and engagement. Two online meetings: Feb 9th, 18h CET OR Feb 11th, 15h CET. If not a Recommender yet, send us an email!

"Bulk RNA-seq to the rescue of differential expression analysis in single-cell transcriptomics" 🧫 📑 A new PCI Genomics recommendation by @mireyaplass.bsky.social: doi.org/10.24072/pci...

📑 New @PCIgenomics recommendation, by @helenechiapello.bsky.social genomics.peercommunityin.org/articles/rec... On the work of Noé Robert et al. (2025) Evidencing strain-dependency of metabolic pathways within 1,494 lactic bacteria genomes with the in silico screening Prolipipe pipeline #OA

🌐 New PCI Genomics recommendation: GrAnnoT enhances annotation transfer via pangenome graphs, connecting linear and graph-based genomes. 🔬 “a valuable pangenome toolkit addition — fast, conservative, reproducible.” ➡️ genomics.peercommunityin.org/articles/rec... #Pangenome #OpenScience

🧬 New PCI Genomics recommendation! HaploCharmer: a Snakemake workflow for read-scale haplotype calling adapted to polyploids, by Simon Rio and colleagues. ✨ Recommended by Lucia Campos Dominguez who praised its scalability for highly complex polyploids 🔗 Recommendation: doi.org/10.24072/pci...

ICYM ASAPbio seeks new board members to support our mission of driving positive change in science communication!🚀 🤝 Board members are involved in strategic planning, participate in decision-making, and engage the community to help connect ASAPbio to contacts who can help us achieve our mission.✍️ 🔬

Great to see this article recommended in PCI Genomics out in G3!

📑 New @genomics.peercommunityin.org recommendation, by @sishuowang.bsky.social genomics.peercommunityin.org/articles/rec... On the work of David Robelin et al. (2025) localScore: an R package to highlight optimal and suboptimal segment in a sequence with associated p-values computation #OpenAccess

Our description of the transcriptomic changes during sexual development in #Podospora anserina is out in @genomics.peercommunityin.org ! peercommunityjournal.org/articles/10.... @i2bcparissaclay.bsky.social @univparissaclay.bsky.social

New PCI Genomics recommendation! Of this preprint: "Sexual reproduction is controlled by successive transcriptomic waves in Podospora anserina" Recommendation by Sébastien Bloyer: doi.org/10.24072/pci... Preprint from Bidard and colleagues: doi.org/10.1101/2024...

PCI Psychology is here!! 🎉🥳 After over a year of hard work by so many people, we are thrilled to announce that we are open for submissions! Join us in making publishing more efficient, equitable, and open: psych.peercommunityin.org #PsychSciSky #scipub

We are looking for new recommenders to join Peer Community in Genomics! The position of “recommender” is analogous to an associate editor at a traditional journal. However, recommenders are not obliged to handle any manuscripts.

At PCI Genomics, we are pleased to have recommended all ERGA manuscripts and publications to date, helping to bring together this vital body of work at the heart of European biodiversity genomics. 🔗 genomics.peercommunityin.org #ERGA #Genomics #Biodiversity #PCIGenomics #OpenScience

Lopezguerra & Douglas recommend the high-quality Xylocopa violacea reference genome by Nash et al., 2024, Heredity, the first annotated pseudo-chromosomal assembly for any Xylocopa bee! 🐝 A crucial step for pollinator research, conservation, and even cancer therapy studies #ERGA tinyurl.com/vwknzu2b

Marino, Fiston-Lavier & Mayoud recommend the VGP-Galaxy pipeline (Larivière et al. 2024), a scalable, open, and user-friendly tool for high-quality genome assembly, powering efforts like the Earth BioGenome Project. 📖 A must-read for the future of biodiversity genomics!

❗❗❗If SciPost has benefited you or your institution, now is the time to show support! Read the SciPost team's open letter here: jscaux.org/blog/post/20... and their previous one here: scipost.org/blog/post/20....

We just published our first paper in the Peer Community Journal - diamond open access, no APCs! Awesome experience, with less than a week from submission after receommendation by #pcigenomics. Highly recommended! #molpalmuc @lmumuenchen.bsky.social @peercommunityin.bsky.social

"A new simulation pipeline enhances benchmarking of transposon polymorphism detection tools" - a new PCI Genomics recommendation from Raúl Castanera: tinyurl.com/mr2ac84m

Invasive insects are a major issue, but few relevant genomic resources are available. This topic is addressed in the latest PCI Genomics recommendation: "Three more reference genomes of invasive insect species" by Vincent Lacroix tinyurl.com/uvfef7wb

"Exploring the correlation between speciation and genome rearrangements", a new PCI Genomics recommendation from Javier del Campo! tinyurl.com/24b5jdsn

📑 New PCI Genomics recommendation, by @saabalde.bsky.social genomics.peercommunityin.org/articles/rec... On Ole K. Tørresen et al. (2025) Comparison of whole-genome assemblies of European river lamprey (Lampetra fluviatilis) and brook lamprey (Lampetra planeri) www.biorxiv.org/content/10.1...

🌳 New recommendation at PCI Genomics! Duruflé et al. (2025) combine GWAS, transcriptomics & population genetics to link chalcone isomerase to radial stem growth in black poplar — advancing sustainable biomass breeding. genomics.peercommunityin.org/articles/rec...

How do portable peer review (PPR), Review Commons and Peer Community In make peer review more sustainable? Check out this editorial in PLOS Biology! journals.plos.org/plosbiology/...

📑 New PCI Genomics recommendation, by S. E. Ramos-Onsins: genomics.peercommunityin.org/articles/rec... On the work of Günther et al. (2025) Estimating allele frequencies, ancestry proportions and genotype likelihoods in the presence of mapping bias www.biorxiv.org/lookup/doi/1...

If for you also, Onagre were monsters imagined by Pierre Bordage, you have to read my edito and the paper from Barloy-Hubler et al on #invasive #plants from this family 🧬🖥️ 🧪 @genomics.peercommunityin.org @peercommunityin.bsky.social doi.org/10.24072/pci...

🎉 Pittion and colleagues’ preprint on #HDMAX2 has been recommended in PCI Genomics! This R package enhances mediation analysis, supporting multiple exposures & non-continuous variables in high-dimensional data. Explore its impact on epidemiology! 🔗 buff.ly/zXXnlcT #Genomics #DataScience #RStats

🚨 New in PCI Genomics! 🚨 Barloy-Hubler et al. assemble plastomes for Ludwigia grandiflora & Ludwigia peploides using hybrid sequencing, revealing haplotypes & positive selection in key genes. A leap forward for Onagraceae genomics! 🌱🔬 🔗 Read more: https://buff.ly/3ETgEi9 #Phylogenetics #PCIGenomics

A couple of months ago I tried the @peercommunityin.bsky.social publishing system & I can only recommend it (pun intended). Please see below to change how we publish science 1/n

📑 New PCI Genomics recommendation, by Nicolas Pollet: https://buff.ly/40lxBsq On the work of Sallé et al. (2024) Spatio-temporal diversity and genetic architecture of pyrantel resistance in Cylicocyclus nassatus, the most abundant horse parasite https://buff.ly/4jCCiqK

📑 New PCI Genomics recommendation, by Jitendra Narayan: https://buff.ly/40ibl2L On the work of Fekete et al. (2024), who present a chromosome-level genome assembly for the mountain hare (Lepus timidus). https://buff.ly/42b4gn6

📑 New PCI Genomics recommendation, by Federico Hoffmann: https://buff.ly/41bWBnZ A recommendation of a thorough investigation into the factors affecting single gene tree dating, from Guillaume Louvel and Hugues Roest Crollius: https://buff.ly/4eRtARP

Peer Community In Genomics is now on Bluesky! 👋 We're a free and transparent platform for evaluating and recommending genomics preprints 📑 ✍️ Part of @peercommunityin.bsky.social , and associated with (optional) Diamond OA journal @peercomjournal.bsky.social 🎈