🌎👩‍🔬 For 15+ years biology has accumulated petabytes (million gigabytes) of🧬DNA sequencing data🧬 from the far reaches of our planet.🦠🍄🌵 Logan now democratizes efficient access to the world’s most comprehensive genetics dataset. Free and open. doi.org/10.1101/2024...

A wonderful day for @bonsaiseqbioinfo.bsky.social, with @camillemrcht.bsky.social's and @npmalfoy.bsky.social's HDR defenses. Congrats for the amazing work! It's a great chance for the team to have you both!

Oh, she's undoubtedly going to talk about @peercommunityin.bsky.social, right?

And one from @imartayan.bsky.social and @curiouscoding.nl at SEA in Venice on simd computation of minimizers

Two talks for Bonsai this Thursday, one from @mikael-salson.univ-lille.fr during ISMB presenting a compressed representation for viral MSAs,

There is no such thing as "AI peer review". AI is not a peer. www.nature.com/articles/d41...

All Bonsai related communications during #JOBIM2025. Come meet us 👇🏻

Bonsai delegation enjoying #JOBIM2025 🌴and Bordeaux's weather

I worked with Thomas during a three months research visit during his PhD, and it resulted in a paper in NAR. I highly recommend him. doi.org/10.1093/nar/...

Bonsai goes camping by the shore ☀️

On day 3 our PhD students Mathilde Girard, @bdegardins.bsky.social and Yohan Hernandez Courbevoie will present in the sequence algorithms session

It's hard to overstate how excited I am about suffixient sets and the new path decomposition variant! This preprint is a quick writeup to go with Nicola's CPM talk yesterday. I hope to eventually write a blog about it, but here's some conceptual highlights. 1/

😊😊😊 Just grateful because some weeks are very good weeks for the team, and it's been one of them ☺️☺️☺️

Bonsai group members will present 3 talks at @recombseq.bsky.social 2025 in Seoul recomb-seq.github.io/program/ excited to meet you there!

Fully funded positions + included travels between Simon Puglisi's and our group. Dm/email if you have questions.

An example of k-mers data structures in action in a result result: with colleagues from CRCT Toulouse and IRMB Montpellier, we have identified an aberrant splicing mechanism in blood stem cells and certain aggressive forms of acute myeloid leukemia. 1/2

Preprint alert! Can we enumerate how many k-mers lexicographic minimizers have? Yes! (implicitly). Looking forward to applications of this 👌🏻 work by Florian Ingels, @mikael-salson.univ-lille.fr @camillemrcht.bsky.social arxiv.org/abs/2412.17492

🚨 Deadline Extended: Call for Papers - RECOMB-seq 2025 🚨 Great news! You now have an extra week to submit your work. 🎉 Updated Deadlines: 🔹 Abstract Registration: Jan 31, 2025 🔹 Submission: Feb 7, 2025 recomb-seq.github.io/papers/

Présente à la convention des labos du CNRS, la seconde après celle de 2019 Antoine Petit annonce un nouveau label pour concentrer les efforts dans 25% des unités : les keylabs La liste des labos est en finalisation, on vous en reparle bientôt dans @themeta.news #VeilleESR

In this study, Thomas looked at the behavior of long read mappers on "short" long reads from viral sequences.