Mathieu Bourdenx
@mbourdenx.bsky.social
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Neuroscientist at @UKDRI at UCL working on Ageing and Dementia. 🧠 Dad x2 Serial procrastinator
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Mathieu Bourdenx
Andrew White 🐦⬛
12 days ago
Making "AI Scientists" has become a hot topic lately. The first reference I could find was from 2008. The term has been used for 20 years! Like "Adam," an AI Scientist robot for studying yeast was published in 2009. I wrote a short post about the term and what it means now.
diffuse.one/p/w1-001
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Mathieu Bourdenx
UK Dementia Research Institute
about 2 months ago
Meet our new Future Leader Fellows!👏 Introducing
@mbourdenx.bsky.social
, Dr Sophie Morse & Dr Wioleta Zelek who have been awarded prestigious Future Leader Fellowships from
@ukri.org
⬇️ Read more about their work👉
buff.ly/JOH2d9N
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Mathieu Bourdenx
UCL Faculty of Brain Sciences
about 2 months ago
🤖 Could an AI scientist help unlock the secrets of dementia? Dr
@mbourdenx.bsky.social
(
@ukdri.ac.uk
at UCL), is working with
@futurehousesf.bsky.social
to explore how AI is transforming research.
buff.ly/O8RjZIX
#UCLDementia
#WorldAlzheimersMonth
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Mathieu Bourdenx
UCL Faculty of Brain Sciences
about 2 months ago
Huge congratulations to Dr
@angelikaza.bsky.social
and Dr
@mbourdenx.bsky.social
who have both been awarded
@ukri.org
Future Leaders Fellowships! 🙌
@uclqsion.bsky.social
@ukdri.ac.uk
Find out about their exciting projects:
www.ucl.ac.uk/brain-scienc...
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Mathieu Bourdenx
UCL News
about 2 months ago
“Ultimately, I see AI leading to an acceleration in discovery in dementia research that could be transformative for patients" says Dr
@mbourdenx.bsky.social
@ukdri.ac.uk
, who is working with an "AI scientist", a system that can analyse data and suggest new research directions not yet explored
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Mathieu Bourdenx
5 months ago
I’m very happy 🥳 to share our new collaborative work, out today in Science Advances! Many thanks to all the co-authors! Differential pathological dynamics triggered by distinct Parkinson patient–derived α-synuclein extracts in nonhuman primates | Science Advances
www.science.org/doi/10.1126/...
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Differential pathological dynamics triggered by distinct Parkinson patient–derived α-synuclein extracts in nonhuman primates
Distinct α-synuclein assemblies trigger distinct neurotoxic cellular pathways.
https://www.science.org/doi/10.1126/sciadv.adu6050
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Gabriela K Popescu
8 months ago
"The biggest mystery is not why arXiv succeeded. Rather, it’s how it wasn’t killed by vested interests intent on protecting traditional academic publishing."
www.wired.com/story/inside...
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Inside arXiv—the Most Transformative Platform in All of Science
Modern science wouldn’t exist without the online research repository known as arXiv. Three decades in, its creator still can’t let it go.
https://www.wired.com/story/inside-arxiv-most-transformative-code-science/
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Flabbergasting
www.theatlantic.com/health/archi...
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Inside the Collapse at the NIH
Administration officials pressured the NIH to avoid clear advice from the agency’s own lawyers to restart grant funding now.
https://www.theatlantic.com/health/archive/2025/02/nih-grant-freeze-biomedical-research/681853/
8 months ago
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Mathieu Bourdenx
Randall Munroe
9 months ago
RNA
xkcd.com/3056
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Mathieu Bourdenx
Clémence Guetté
9 months ago
Sur les retraites, Bayrou a menti. Le "déficit caché" des retraites n’a jamais existé. Pour justifier son refus d'abroger la réforme des retraites, il avait inventé un déficit de 55 milliards en 2030. La Cour des comptes dit que ce sera 5 fois moins. Maintenant : abrogation.
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🚨Cool Job Alert 🚨consider joining this amazing and rocknroll lab
add a skeleton here at some point
9 months ago
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Mathieu Bourdenx
Melanie D’Arrigo
9 months ago
Tesla paid $0 in federal income tax last year. 2022: $0 2021: $0 2020: $0 2019: $0 2018: $0 Tesla reported $6.7 billion in profit in those years.
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Mathieu Bourdenx
Sonia Garcia-Ruiz
10 months ago
New in
@naturecomms.bsky.social
: I'm thrilled to share with you our latest work that applies
#srRNAseq
to understand splicing accuracy across human introns, tissues and in the context of ageing and neurodegeneration
www.nature.com/articles/s41...
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Splicing accuracy varies across human introns, tissues, age and disease - Nature Communications
Inaccuracies in RNA splicing may play a significant role in aging and disease. Here, the authors present a comprehensive characterization of splicing accuracy across over 14,000 human samples, offerin...
https://www.nature.com/articles/s41467-024-55607-x
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After spending 4 years in the USA for my postdoc and my daughter being born there, it always felt (and still feels like!) a second home. So it’s utterly sad to see what’s happening now. I stand with all my American friends! Resist ✊💪
10 months ago
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Mathieu Bourdenx
Clémence Guetté
10 months ago
Notre programme est prêt. Nous sommes au travail. Plutôt que des aventures personnelles, nous faisons des propositions concrètes pour dessiner un horizon souhaitable.
www.leparisien.fr/elections/pr...
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Avec son nouveau programme, LFI fait un pas de plus vers la présidentielle
EXCLUSIF. Le mouvement de Jean-Luc Mélenchon a mis à jour son programme, l’Avenir en commun, et se prépare plus que jamais à une nouvelle él
https://www.leparisien.fr/elections/presidentielle/avec-son-nouveau-programme-lfi-fait-un-pas-de-plus-vers-la-presidentielle-24-01-2025-U27NYRSN6VE2RCJP2X6JY6GPF4.php
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That’s completely crazy ! And worrisome …
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10 months ago
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Still waiting to see most UK and French universities to do the same …
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10 months ago
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Mathieu Bourdenx
Constantin Ahlmann-Eltze
10 months ago
After 4y in the making, I am super excited that my main PhD project is published 🎉🥳🎉🎉🥳
www.nature.com/articles/s41...
LEMUR is a tool to analyze multi-condition single-cell data and model differential expression as a continuous function of the cell-state space. Some highlights⬇️
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Mathieu Bourdenx
Ming Tommy Tang
11 months ago
🔥 chatomics! I regret not learning this well in college—and it changed how I approach bioinformatics today. Here’s my story and why you should avoid my mistake. 🧬
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Paper alert from the Duff Lab 🚨🚨 My amazing colleagues showed that, in novel MAPTKI models, hyperphosphorylation (in absence of aggregation or even seeding) is sufficient to drive synapse loss and cognitive deficits. Huge implications for preclinical research and the way to therapies. Have a read!!
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In vivo hyperphosphorylation of tau is associated with synaptic loss and behavioral abnormalities in the absence of tau seeds - Nature Neuroscience
Mice expressing humanized mutant tau exhibit synaptic loss and behavioral abnormalities in the absence of abnormal tau conformers, suggesting that hyperphosphorylated tau can be pathological, at least...
https://www.nature.com/articles/s41593-024-01829-7
11 months ago
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Mindblowing paper creating spatial aging clocks 🤯🤯 ! Very neat use of spatial tx. Congrats to
@brunetlab.bsky.social
and all the authors
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11 months ago
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Help from the MRI community needed: I would like to plot simple regional expression of a protein in the Schaefer atlas. I have a vector of values per region for the atlas. I can’t seem to find my way around that simple thing. Any help will be appreciated!!
@nilearn.bsky.social
?
12 months ago
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It seems that a lot of people have transitioned from X to here, however I feel that institutes/centres/unis are still missing. Did you try to convince yours to move? If so, how?
12 months ago
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Mathieu Bourdenx
Sam Rodriques
12 months ago
New on BioRxiv: We report a new, endogenous molecular clock in unmodified human cells and tissues. It is ticking away right now in almost every cell in your body. Paper here:
www.biorxiv.org/content/10.1...
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Mathieu Bourdenx
BrunetLab
12 months ago
Aging starter pack!
go.bsky.app/5UXXaDA
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Mathieu Bourdenx
Jean-François Cudennec
12 months ago
I will not hide my inner convictions anymore. Be the change you want to see in the world !
#AcademicSky
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So happy to this story led by Steph Fowler (Duff lab at UCL, now leading her own lab at Oxford) finally out. Amazing to see tau filaments in situ! Now I want to know what is this additional density and what is the tether!
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12 months ago
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Sounds like a fascinating approach!
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12 months ago
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Mathieu Bourdenx
James Catterson
12 months ago
🧠Sharing this Starter Pack again as the list has now reached 80 people! A great mix of Profs/PIs/Post-docs/PhDs/Technicians. Please re-post so it can reach a wider audience as I'm sure there are more of us out there ☺️🦋
go.bsky.app/S6FfsTp
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Mathieu Bourdenx
Alan Murphy
12 months ago
Delighted to share our work to develop a genomic DNN, Enformer Celltyping, to accurately predict epigenetic signals in previously unseen cell types has now been published
doi.org/10.1038/s414...
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Predicting cell type-specific epigenomic profiles accounting for distal genetic effects - Nature Communications
Enformer Celltyping is a genomic deep learning model that predicts epigenetic signals in unseen cell types using distal DNA interactions and chromatin accessibility data. Here, authors show it general...
https://doi.org/10.1038/s41467-024-54441-5
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