Sophia Swartz
@sophswartz.bsky.social
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molecular and cellular bio PhD candidate in the Cress and Doudna labs @UC Berkeley
reposted by
Sophia Swartz
Sternberg Lab
about 2 months ago
1/8 🚨 New preprint from the
@sternberglab.bsky.social
&
@martinjinek.bsky.social
labs! CRISPR-associated transposases (CASTs) insert large DNA cargoes at precise genomic locations — no double-strand breaks needed.
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reposted by
Sophia Swartz
bioRxiv Biochemistry
2 months ago
TIR-like NADases act in bacterial immunity and the RNA vault
https://www.biorxiv.org/content/10.64898/2026.05.01.722283v1
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reposted by
Sophia Swartz
Doudna Lab
2 months ago
We present VIPR, a phage-encoded RNA-guided system that recognizes DNA with a noncontiguous code unlike CRISPR. Tiny, programmable, possibly ancestral to CRISPR immunity; VIPR is built around a striking RNA-DNA-DNA triplex.
add a skeleton here at some point
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reposted by
Sophia Swartz
Erin Doherty
11 months ago
Excited to share our new preprint co-led by
@jnoms.bsky.social
! Here we reveal an exceptional diversity of viral 2H phosphodiesterases (PDEs) that enable immune evasion by selectively degrading oligonucleotide-based messengers. This 2H PDE fold has evolved striking substrate breath & specificity.
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Divergent viral phosphodiesterases for immune signaling evasion
Cyclic dinucleotides (CDNs) and other short oligonucleotides play fundamental roles in immune system activation in organisms ranging from bacteria to humans. In response, viruses use phosphodiesterase...
https://www.biorxiv.org/content/10.1101/2025.08.21.671373v1
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reposted by
Sophia Swartz
bioRxiv Microbiology
11 months ago
Recurrent acquisition of nuclease-protease pairs in antiviral immunity
https://www.biorxiv.org/content/10.1101/2025.07.28.667249v1
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reposted by
Sophia Swartz
Owen Tuck
11 months ago
Excited to finally share this work! We noticed a pair of genes - a nuclease and a protease - shuffles between antiviral systems. We show how proteolysis activates the nuclease, triggering defense in known and unknown immune contexts.
tinyurl.com/2uwwy4ty
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Recurrent acquisition of nuclease-protease pairs in antiviral immunity
Antiviral immune systems diversify by integrating new genes into existing pathways, creating new mechanisms of viral resistance. We identified genes encoding a predicted nuclease paired with a trypsin...
https://tinyurl.com/2uwwy4ty
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