Charlotte Tumescheit
@schnamo.bsky.social
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Computational Biology-Chemistry-Medicine Postdoc at University of Zurich, she/they
reposted by
Charlotte Tumescheit
Katy Brown
4 months ago
Come to the BOKR session at 2:20 and see Charlotte Tumescheit
@schnamo.bsky.social
give a super interesting talk about improving prediction of molecular properties by incorporating ontologies.
#ISMBECCB2025
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Charlotte Tumescheit
Katy Brown
4 months ago
Come and see me in the ice rink if you want to plot phylogenies in matplotlib! Poster 206.
GitHub.com/KatyBrown/plot_phylo
#ISMBECCB2025
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reposted by
Charlotte Tumescheit
Katy Brown
4 months ago
Excited for the ISMB/ECCB conference! I have two posters A520 today about an endogenous and exogenous virus I found in nematodes - and B206 tomorrow about my tool plot_phylo for drawing phylogenies in matplotlib.
#ISMBECCB2025
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New Review Paper Alert! Are you interested in how to use AI to decode RNA? Check it out here
www.nature.com/articles/s41...
@jannahastings.bsky.social
@vincentjung.bsky.social
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Decoding the interactions and functions of non-coding RNA with artificial intelligence - Nature Reviews Molecular Cell Biology
Studying RNA function is constrained by limitations of traditional methods. This Roadmap discusses how artificial intelligence (AI) can enhance the study of how non-coding regions of mRNA regulate its...
https://www.nature.com/articles/s41580-025-00857-w
5 months ago
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reposted by
Charlotte Tumescheit
Nature Reviews Molecular Cell Biology
5 months ago
New Online! Decoding the interactions and functions of non-coding RNA with artificial intelligence
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Decoding the interactions and functions of non-coding RNA with artificial intelligence
Nature Reviews Molecular Cell Biology, Published online: 19 June 2025; doi:10.1038/s41580-025-00857-wStudying RNA function is constrained by limitations of traditional methods. This Roadmap discusses how artificial intelligence (AI) can enhance the study of how non-coding regions of mRNA regulate its function, and suggests how to use AI to harness publicly available data towards that goal.
https://bit.ly/444mmGG
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🧬 Are you into endogenous viral elements? If yes (and you should be, they are pretty cool) I highly recommend getting in touch with the amazing Katy via the sign up sheet! 🦠
add a skeleton here at some point
6 months ago
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reposted by
Charlotte Tumescheit
Institute for Implementation Science in Health Care (IfIS) UZH
8 months ago
#Wanted
: Our Medical Knowledge and Decision Support Group
#IfIS
seeks a PhD candidate in
#AI
for
#Metabolism
(80%) to join the MetaboLinkAI project jointly funded by
@snsf-ch.bsky.social
@agencerecherche.bsky.social
📩 Apply by 31 March 2025 ➡️
jobs.uzh.ch/job-vacancie...
@jannahastings.bsky.social
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UZH: PhD Position in AI for Metabolism
The Medical Knowledge and Decision Support Group at the University of Zurich is seeking an enthusiastic PhD candidate to join the MetaboLinkAI project, jointly funded by the Swiss National Science Fou...
https://jobs.uzh.ch/job-vacancies/phd-position-in-ai-for-metabolism/0ce904f5-3873-4c6f-92c2-705c6beb98a2
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reposted by
Charlotte Tumescheit
Max Kozlov
8 months ago
NEW: The NIH has begun terminating grants for active projects studying gender identity, DEI, environmental justice, climate change, among other topics. At least 16 termination letters have already been sent — and hundreds more are coming, people inside NIH tell me.
www.nature.com/articles/d41...
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Exclusive: NIH to terminate hundreds of active research grants
Studies that touch on LGBT+ health, gender identity and DEI in the biomedical workforce could be terminated, according to documents obtained by Nature.
https://www.nature.com/articles/d41586-025-00703-1
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reposted by
Charlotte Tumescheit
Katy Brown
9 months ago
My tool plot_phylo is now available through @pyopensci! Used to plot a phylogenetic tree using matplotlib functionality, so mpl can be used for additional annotation. Very smooth and helpful process with lots of useful feedback.
www.pyopensci.org/python-packa...
github.com/KatyBrown/pl...
🧪🧬🖥️
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pyOpenSci Open Peer Review & Accepted Packages
pyOpenSci’s Website
https://www.pyopensci.org/python-packages.html
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reposted by
Charlotte Tumescheit
Katie Mack
10 months ago
Devastating for scientists and their research, and everyone who benefits from that research. I’m not sure if everyone outside academia is aware that a delay or “pause” in grant funding often means the researchers themselves are lost from the field, along with their expertise.
add a skeleton here at some point
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Hello Bluesky community :) Would like to take this opportunity to draw your attention to some selected bioinformatics work I did together with
@thekatybrown.bsky.social
, if you are dealing with multiple sequence alignments it might be useful!
peerj.com/articles/129...
10 months ago
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Check out our recently published paper about evaluating AI-generated images! Wonderful work together with
@jannahastings.bsky.social
@muhrlizza.bsky.social
and more!
www.cureus.com/articles/308...
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Evaluating Text-to-Image Generated Photorealistic Images of Human Anatomy
Background: Generative artificial intelligence (AI) models that can produce photorealistic images from text descriptions have many applications in medicine, including medical education and the generat...
https://www.cureus.com/articles/308456-evaluating-text-to-image-generated-photorealistic-images-of-human-anatomy#!/
10 months ago
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reposted by
Charlotte Tumescheit
Science Magazine
10 months ago
“The impact of the collective executive orders and directives appears devastating.”
scim.ag/40ureTO
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Trump hits NIH with ‘devastating’ freezes on meetings, travel, communications, and hiring
Researchers facing
https://scim.ag/40ureTO
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