Sylvain Prigent
@sylvainprigent.bsky.social
📤 693
📥 215
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Bioinformatics, metabolomics and Plant science
reposted by
Sylvain Prigent
INRAE UMR1332 BFP
6 days ago
France joins Fascination of Plants Day 2026 led by the European Plant Science Organisation 🌱 New National Coordinators, Quynh-Trang Bui & Anthony Bernard (INRAE BFP – Université de Bordeaux), will lead activities across France. Join
#PlantDay2026
and submit your event:
plantday18may.org
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Home - Fascination of Plants Day 18 May 2026
Take a look at the previous Fascination of Plants Day editions.
https://plantday18may.org/
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Sylvain Prigent
INRAE UMR1332 BFP
about 1 month ago
📣We are opening a permanent Research Scientist (CRCN) position in metabolomics and agroecology in Bordeaux. If you have a PhD and want to work at the interface of metabolism, biodiversity and agroecosystems, you can find all the details here:
jobs.inrae.fr/en/open-comp...
#metabolomics
#academicJobs
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Junior research scientist on metabolomics and agroecology
CR26-BAP-1 - The Fruit Biology and Pathology joint research unit offers a multidisciplinary environment (understanding of the underlying mechanisms of plant development or their interactions with pathogens or with the environment through to the application of this knowledge in translational research). The unit has a range of experimental facilities dedicated to growing and phenotyping plants. MeTA is a highly multidisciplinary team using approaches combining experimentation and modelling to study plant metabolism. Moreover, the team hosts the Bordeaux Metabolome platform that provides the tools necessary to explore metabolomic diversity. You will also benefit from its affiliation to the INBS MetaboHUB (metabolomics) and PHENOME (phenomic and phenotyping) networks.The metabolome gathers information about metabolic functioning that is at the heart of all living processes. Consequently, metabolomic analyses of biodiversity combined with artificial intelligence show the highly predictive nature of the metabolome, particularly during adaptation to extreme habitats. Metabolomics has been used to predict yield and understand the basics, and study plant/pest interactions and multi-stress responses. Your role will be to study agroecosystems using approaches combining metabolomics and modelling to update the mechanisms governing the relationships between organisms (plants, insects, microbiota, etc.) and/or determine ecosystem services. The ultimate purpose will be to develop predictive models dedicated to the ecological transition of agriculture.The project extends the understanding of links between metabolism programming and trade-offs with plant performance to agroecology, from plant to ecosystem scale.Your short-term objective will be to formulate a strategy drawing on the bibliography and to establish a network of national and international collaborations to identify high-performance agroecosystems adapted to different contexts or, on the contrary, to imbalanced agroecosystems. This is an essential step to fine-tune the project objectives. It concerns more particularly the identification of ecosystem services that will be targeted by modelling. Your medium-term objectives will be to conduct experiments on agroecosystems comprising various compartments (plants, microorganisms, soil, air, etc.) to obtain climatic and physiological data, assess ecosystem services, and collect samples from each compartment. Reproducible and interoperable data from organism metabolomes and phenomes could be obtained thanks to numerous possibilities provided by the Bordeaux Metabolome Platform, particularly high-throughput combined with high-resolution mass spectrometry. Statistical analyses and predictive models could be developed to establish links between metabolism and ecosystem services.Your long-term objectives will be to understand the metabolic and physiological mechanisms involved in agroecological system dynamics. Functional genomics approaches could be used to validate the strong hypotheses generated by modelling thanks to collaborations with other researchers from the team and the unit. The purpose of the project will be to propose new strategies for agriculture, such as decision-making tools based on predictive metabolomics.
https://jobs.inrae.fr/en/open-competitions/open-competitions-research-scientists-job-profiles-crcn/cr26-bap-1
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reposted by
Sylvain Prigent
INRAE UMR1332 BFP
about 2 months ago
@sylvainprigent.bsky.social
presented metabolomics data generated at
@bdxmetabolome.bsky.social
, combined with field trial data and ML approaches, at the final event of the Untwist project. A real pleasure for us to be part of this project since 2020!
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reposted by
Sylvain Prigent
INRAE UMR1332 BFP
about 2 months ago
Un poste de MCF des Universités en "Génétique quantitative appliquée aux espèces végétales" est ouvert au concours 2026 pour l'Université de Bordeaux. Projet de recherche axé sur "Déterminants génétiques de la résilience des céréales aux stress multiples". Laboratoire BFP - Département SE (UB)
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reposted by
Sylvain Prigent
INRAE UMR1332 BFP
about 2 months ago
📢 New bioRxiv preprint led by Coralie Muller, PhD student in the
#META
team, co-supervised by
@cfrioux.bsky.social
and
@sylvainprigent.bsky.social
MetaNetMap automates the mapping of metabolomic annotation onto metabolic networks. Give it a try!
doi.org/10.64898/202...
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MetaNetMap: automatic mapping of metabolomic data onto metabolic networks
Motivation Metabolic networks represent genome-derived information about the biochemical reactions that cells are capable of performing. Mapping omic data onto these networks is important to refine mo...
https://doi.org/10.64898/2026.01.05.697697
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Ce fut un tel plaisir de participer à l'organisation de ces JOBIM ! Encore merci à toute l'équipe d'organisation !
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8 months ago
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Sylvain Prigent
Plateforme Bordeaux Metabolome
9 months ago
This morning, Cathleen presented results at the GPR-BPS general assembly, based on data acquired on our metabolomics platform. Great to see our work contributing to broader research efforts!
#Metabolomics
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Sylvain Prigent
JOBIM 2025
10 months ago
🌱 Le comité d'organisation de
#JOBIM2025
remercie chaleureusement le GPR BPS pour son soutien au congrès qui se tiendra les 8-11 juillet à Bordeaux. Vous ne connaissez pas le GPR BPS ? 🤔 1/2 ⤵️
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LinkedIn
This link will take you to a page that’s not on LinkedIn
https://lnkd.in/eDjdiNMQ
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reposted by
Sylvain Prigent
Société Française de BioInformatique
9 months ago
‼️ Rappel ‼️ 📍 La SFBI propose 15 bourses de voyage pour
@jobim2025.bsky.social
! ℹ️ Plus d'informations :
www.sfbi.fr/blog/article...
📎 Dossier accessible en ligne :
www.sfbi.fr/static/doc/S...
⏳ Soumission des dossiers du 15 mai au 5 juin 2025 ✉️ Pour toutes questions :
[email protected]
🙂
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reposted by
Sylvain Prigent
INRAE UMR1332 BFP
10 months ago
Quelques 📸 des Journées Jeunes Chercheur·e·s du département BAP, à Bordeaux 14-16 mai Organisées par un comité local, elles ont permis de mettre en valeur les travaux scientifiques des doctorant·e·s et postdoc via des présentations orales, posters, échanges scientifiques et moments de convivialité 👏
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Sylvain Prigent
Loic Lepiniec
10 months ago
plants.peercommunityin.org
, new Peer Community In .. PLANTS !
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Sylvain Prigent
INRAE_France
11 months ago
Coup de projecteur sur des projets en rupture et à haut risque du programme EXPLOR’AE ✔️39 idées exploration et 5 projets transformation déjà financés
#France2030
Des hypothèses originales pour des innovations de rupture, des recherches qui sortent des sentiers battus !
url.inrae.fr/44ySyng
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EXPLOR’AE : INRAE dévoile des projets de recherche en rupture et à haut risque
DOSSIER DE PRESSE - Le programme France 2030 « Accélération de la recherche à risque en Agriculture, Alimentation et Environnement » EXPLOR’AE offre un cadre inédit pour soutenir des projets de recher...
https://url.inrae.fr/44ySyng
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reposted by
Sylvain Prigent
Loïc
11 months ago
Interesting critique in Nature Metabolism on misusing gene-centric tools for
#metabolomics
data 🧪. Turns out metabolites ≠ genes🧬—and forcing them into gene-style pathway analysis can really skew results! Worth a read if you're into
#systems-biology
or
#bioinformatics
. 🔗
doi.org/10.1038/s422...
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Metabolites are not genes — avoiding the misuse of pathway analysis in metabolomics - Nature Metabolism
Pathway analysis, originally developed for gene expression data, has been adapted for metabolomics. However, owing to the unique characteristics and constraints of metabolites compared with genes, pat...
https://doi.org/10.1038/s42255-025-01283-0
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We're hiring! We're looking for a postdoc in systems biology with a focus on metabolic modeling Great science, great people and a great place to work (yes, I’m biased) The position will be co-supervised by the brilliant
@cfrioux.bsky.social
Details&application:
recrutement.inria.fr/public/class...
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11 months ago
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Sylvain Prigent
JOBIM 2025
12 months ago
Dans moins d'une semaine, l'appel à soumissions pour
#JOBIM2025
sera fini ‼️ 🕛 Pour rappel, vous avez jusqu'au lundi 31 mars, à 23h59 (CET), pour nous partager vos travaux. Alors bon courage à tou.te.s pour cette dernière ligne droite !
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reposted by
Sylvain Prigent
INRAE UMR1332 BFP
12 months ago
Aujourd'hui Coralie de
#meta
présentait son sujet de doctorat dans MT180 Trois minutes de présentation pour nous apprendre comment Batman et elle-même peuvent utiliser les réseaux métaboliques pour sauver le monde !
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N'oubliez pas, la finale de
#mt180
à Bordeaux c'est aujourd'hui ! Venez notamment entendre parler de réseaux métaboliques et de métabolomique !
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12 months ago
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reposted by
Sylvain Prigent
Pint of Science FR
12 months ago
✨ PLUS QUE DEUX MOIS avant
#pint25
✨ 📍 +55 villes, du Parc naturel du Limousin à la Réunion et la Guyane 🔬 Des centaines de scientifiques passionné·e·s 🫂 500 organisateurs·trices à fond ! 📱 Programme : 31 mars 🎟 Tickets : 14 avril 👉
pintofscience.fr
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reposted by
Sylvain Prigent
Société Française de BioInformatique
about 1 year ago
Juste un petit rappel au cas où ... mais la deadline des
#soumissions
pour
#JOBIM2025
c'est dans quelques jours ... ⏲️ Ce serait dommage de la louper 😃 On a hâte de voir les travaux de la communauté 🤓
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Sylvain Prigent
Science Magazine
about 1 year ago
Exclusive: NSF this week began to search through billions of dollars of grants the agency has already awarded for anything touching on topics that President Donald Trump has criticized. And NSF has blocked grantees and trainees from accessing funds while the review is underway.
scim.ag/3El0NZh
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EXCLUSIVE: NSF starts vetting all grants to comply with Trump’s orders
Grantee accounts remain frozen, while union accuses NSF of ignoring rules governing peer review
https://scim.ag/3El0NZh
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reposted by
Sylvain Prigent
JOBIM 2025
about 1 year ago
➡️ M Björn GRÜNING sera
#keynote
speaker à
#JOBIM2025
Il nous vient d'Allemagne, du département d'Informatique de l'Université de Freiburg. 💡 Si les workflows, la reproductiblité et la science ouverte vous intéressent, venez l'écouter et le rencontrer en Juillet à Bordeaux, pour
#JOBIM2025
!
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Sylvain Prigent
JOBIM 2025
about 1 year ago
➡️ Mme Emma Schymanski sera
#keynote
speaker à
#JOBIM2025
Emma nous vient du Centre pour la Biomédecine Systémique de l'Université du Luxembourg. 📊 Si les statistiques, le traitement ou l'intégration de données métabolomiques vous intéressent, rendez-vous en Juillet à Bordeaux, pour
#JOBIM2025
!
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Sylvain Prigent
JOBIM 2025
about 1 year ago
➡️ M Eric Rivals sera
#keynote
speaker à
#JOBIM2025
! Eric mène sa recherche au Laboratoire d'Informatique, de Robotique et de Microélectronique de Montpellier. 🧬 Si le développement de méthodes et d'algorithmes pour les séquences vous intéresse, rendez-vous en Juillet à Bordeaux pour
#JOBIM2025
!
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reposted by
Sylvain Prigent
JOBIM 2025
about 1 year ago
➡️ M Jean Monlong sera
#keynote
speaker à
#JOBIM2025
! Il travaille à l'Institut de Recherche en Santé Digestive de Toulouse. 💊 Si la génomique fonctionnelle et intégrative vous intéresse, ne manquez pas de l'écouter et de le rencontrer en Juillet à Bordeaux pour
#JOBIM2025
!
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Sylvain Prigent
JOBIM 2025
about 1 year ago
➡️ Mme Anamaria NECSULEA sera
#keynote
speaker à
#JOBIM2025
! Anamaria travaille au Laboratoire de Biométrie et Biologie Evolutive de Lyon. 🐒 Si la génomique évolutive et la phylogénie vous intéressent, ne manquez pas de l'écouter et de la rencontrer en Juillet à Bordeaux, pour
#JOBIM2025
!
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reposted by
Sylvain Prigent
Plateforme Bordeaux Metabolome
about 1 year ago
Meet Maggot: a web-based tool for managing and sharing research metadata! It simplifies dataset organization, FAIR compliance, and collaborative metadata creation, enabling efficient sharing and documentation.
#FAIRdata
#OpenScience
doi.org/10.1093/giga...
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An ecosystem for producing and sharing metadata within the web of FAIR Data
AbstractBackground. Descriptive metadata are vital for reporting, discovering, leveraging, and mobilizing research datasets. However, resolving metadata is
https://doi.org/10.1093/gigascience/giae111
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Sylvain Prigent
JOBIM 2025
over 1 year ago
L'appel à proposition pour les mini
#symposiums
de
#JOBIM2025
est lancé !! Un mini-symposium: ➡️ réunit des scientifiques autour d'une thématique spécialisée en
#bioinformatique
🗣️ ➡️ dure 3 heures ⌚ ⌛Attention, vous avez jusqu'au Vendredi 17 Janvier 2025 à 18h pour nous envoyer vos propositions!
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Sylvain Prigent
Plateforme Bordeaux Metabolome
over 1 year ago
Bordeaux Metabolome was well-represented at the 13th Metabohub Scientific Days! Theoretical insights and practical sessions were engaging and insightful. It was wonderful to meet in person after so many virtual meetings!
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Sylvain Prigent
JOBIM 2025
over 1 year ago
🍂 Septembre touche déjà à sa fin... 🍃 Contrairement à nos efforts pour préparer un super JOBIM 2025 ! 🎉 Alors vous aussi, préparez-vous pour l'évènement annuel de la bioinformatique française, et marquez dès maintenant dans vos agendas qu'il aura lieu à Bordeaux du 8 au 11 juillet 2025 !
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Sylvain Prigent
Plateforme Bordeaux Metabolome
over 1 year ago
📢 Le 15 novembre de 13h30 à 16h30 MetaboHUB vous présentera les grandes orientations scientifiques de l'infrastructure pour la période 2025-2027, avec des développements pour une métabolomique plus robuste, plus sensible et intégrant les nouvelles avancées de l’IA Lien d'inscription gratuite à venir
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reposted by
Sylvain Prigent
almost 2 years ago
After three months of intense work, the first experiment of the ANR-MEMENTO project on periphytic communities is complete !
#ANR-MEMENTO
,
#metabolomics
,
#ecotoxicology
,
#aquaticmicrobialcommunities,@AgenceRecherche
, @INRAE_NA_BDX, @LMGE, @JoanArtigas, @UCA,
@bdxmetabolome.bsky.social
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reposted by
Sylvain Prigent
Laboratoire des Interactions Plantes, Microbes et Environnement
about 2 years ago
[#Job] 📢 Our lab located in Toulouse, is offering a permanent position for a research fellow in molecular phytopathology - Determinism of host specificity in phytopathogenic bacteria 🦠. ▶️ Apply until 2024 March 5th 🔗
youtu.be/Hfpd2aZafCw
▶️
jobs.inrae.fr/en/open-compet…
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reposted by
Sylvain Prigent
INRAE UMR1332 BFP
over 2 years ago
📢 New article published by the 🍓 group of
#FDFE
team in Acta Horticulturae @ishs_hort « 2D representation of the plant architecture in strawberry »
doi.org/10.17660/Act...
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We are recruiting an assistant engineer for 1 year at the Bordeaux Metabolome facility to work on the Metabohub project. Come join an interdisciplinary team to develop/implement mass spectrometry methods. If you are interested, please apply here:
jobs.inrae.fr/en/ot-19330
🌾🧪
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Assistant engineer - Mass spectrometry analyst
Research unit Currently counting over 150 staff members, including non-permanent personnel, UMR 1332 BFP is a partnership between INRAE (Divisions of Biology and Plant Breeding and Plant Health and En...
https://jobs.inrae.fr/en/ot-19330
over 2 years ago
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Saviez-vous que vous pouvez aller visiter gratuitement l'observatoire de Bordeaux à Floirac tous les samedi matin ? Vous serez accueillis par les passionnés de l'association Sirius !
over 2 years ago
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Sylvain Prigent
Pascal MARTIN 👨🔬🧬💻
over 2 years ago
#introduction
Hello, I'm a research engineer at INRAE Bordeaux 🇲🇫. My current research interests are in 1) gene expression regulation during endoreduplication in 🍅 and 2) proteins regulating the elongation of RNA polymerase II. I'm a fan of functional genomics methods and bioinformatics/Rstat.
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reposted by
Sylvain Prigent
Journal of Experimental Botany
over 2 years ago
Hello! JXB is now on Bluesky. Please reconnect if you knew us from Twitter. Interested in the latest plant science research? Please give us a follow. If you know another researcher who would like our botany posts, we would be grateful if you tag them in the comments below (if they wouldn't mind)!
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N'oubliez pas, ce vendredi c'est la nuit européenne des chercheurs ! À Bordeaux ça se passe à cap science
bit.ly/3EUx0DC
Si jamais vous voulez échanger avec ceux qui font la science, viendez ! (et notamment si vous voulez parler plantes, machine-learning et métabolomique vers 22h, je dis ça...)
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Nuit Européenne des Chercheur.euses 2023 - Cap Sciences
Nuit Européenne des Chercheur.euses 2023 Dans 300 villes de toute l’Europe, le même soir à la même heure, des chercheur.e.s vont à la rencontre du public pour lui raconter qui ils sont et ce qu...
https://www.cap-sciences.net/au-programme/evenement/grand-public/nuit-europeenne-des-chercheur-euses-2023/
over 2 years ago
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🧬🖥️ Exploring metabolomics? Beware! Pathway analysis (ORA) can be tricky and factors like database choice and background set can shake up your results! A very nice collaboration between the imperial college and INRAE Toulouse to offer handy tips for better analysis
doi.org/10.1371/jour...
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Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis
Author summary Metabolomics is a rapidly growing field of study involving the profiling of small molecules within an organism. It allows researchers to understand the effects of biological status (suc...
https://doi.org/10.1371/journal.pcbi.1009105
over 2 years ago
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reposted by
Sylvain Prigent
Bethany Brookshire
over 2 years ago
🧪 The IgNobel prizes are out and I really need to know the results of the study counting human nose hairs over the life span
www.theguardian.com/science/2023...
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Reanimated spiders and smart toilets triumph at Ig Nobel prizes
Electric chopsticks and ‘jamais vu’ studies also scoop awards recognising research that makes people ‘laugh, then think’
https://www.theguardian.com/science/2023/sep/14/reanimated-spiders-and-smart-toilets-triumph-at-ig-nobel-prizes
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