Sumin Kim
@suminkim.bsky.social
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Postdoc in Hansen Lab @MIT Fascinated by the nucleus, neurons, and imaging 🔬 she/her
Excited to be a part of this amazing community!
add a skeleton here at some point
4 months ago
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Sumin Kim
5 months ago
Excited to share my first preprint from the
@andersshansen.bsky.social
lab! It's got genomics, AI, and biology - all wrapped up in a great paper. Also very grateful to my amazing collaborator, Fan, for all his hard work. Please check it out and let me know what you think!
tinyurl.com/bdfvtd6f
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Genome structure mapping with high-resolution 3D genomics and deep learning
Gene expression is often regulated by distal enhancers through cell-type-specific 3D looping interactions, but comprehensive mapping of these interactions across cell types is experimentally intractab...
https://tinyurl.com/bdfvtd6f
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Sumin Kim
Anders Sejr Hansen
5 months ago
(1/n) New preprint from
@claricehongky.bsky.social
Fan Fang Varshini Ramanathan in collab w Jie Liu. Q: How do we get ultra-high-res 3D genome maps? A: New deep learning model, Cleopatra. Cleo trains on Micro-C, fine-tunes on RCMC, and predicts genome-wide 3D maps at ultra-high resolution.
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Sumin Kim
Anders Sejr Hansen
5 months ago
(1/n) Thread
@matteomazzocca.bsky.social
@domenicnarducci.bsky.social
Simon Grosse-Holz
@jessematthias.bsky.social
preprint Q: how does chromatin move? Using MINFLUX, SPT & SRLCI, we track chromatin dynamics across 7 orders of magnitude in time to provide answers
www.biorxiv.org/content/10.1...
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Sumin Kim
5 months ago
1/ Super excited to share my first preprint from
@andersshansen.bsky.social
Lab! We used MINFLUX to track chromatin (H2B-Halo and Fbn2 locus) at an unprecedented 200 μs, then combined it with SPT to span μs-minutes (H2B) or SPT & Super-Res Live-Cell Imaging (SRLCI) to span μs-hours (Fbn2)
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