Susan Gregurick
@sgregurick.bsky.social
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📥 65
📝 156
I’m the Associate Director for Data Science at the NIH. All views, posts, and retweets are my own.
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add a skeleton here at some point
3 minutes ago
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Susan Gregurick
www.nejm.org/doi/full/10....
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A Threat to Evidence-Based Vaccine Policy and Public Health Security at the FDA | NEJM
Twelve former commissioners of the FDA express concern that the agency’s recent moves will undermine a regulatory model designed to ensure vaccine safety, effectiveness, and availability.
https://www.nejm.org/doi/full/10.1056/NEJMp2517497
4 minutes ago
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www.nejm.org/doi/full/10....
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A Threat to Evidence-Based Vaccine Policy and Public Health Security at the FDA | NEJM
Twelve former commissioners of the FDA express concern that the agency’s recent moves will undermine a regulatory model designed to ensure vaccine safety, effectiveness, and availability.
https://www.nejm.org/doi/full/10.1056/NEJMp2517497
4 minutes ago
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cdt.amegroups.org/article/view...
🧪. A thoughtful article on the need for policies regarding AI use for manuscript writing assistance.
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Artificial intelligence for manuscript writing: policies and implementation in cardiovascular journals
Artificial intelligence for manuscript writing: policies and implementation in cardiovascular journals
https://cdt.amegroups.org/article/view/144694/html
23 days ago
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Excited and grateful to be awarded HPCwire 35 legends this year. Bittersweet as I am unlikely to be able to attend SC25 due to the furlough. Congratulations to my esteemed colleagues and wishing you a great conference.
#SC25
www.hpcwire.com/35-hpc-legen...
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35 HPC Legends - HPCwire
We are proud to announce the HPCwire 35 Legends Class of 2025. Our second annual list recognizes 35 luminaries who have made HPC what it is today. The High Performance Computing (HPC) market is distin...
https://www.hpcwire.com/35-hpc-legends/
24 days ago
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Beyond the Secretory Pathway: New Insights Into Protein Release - Chen - 2025 - Traffic - Wiley Online Library
onlinelibrary.wiley.com/doi/10.1111/...
. Thank you all for publishing a wonderful scientific summary on inaugural conference on Molecular Mechanisms & Physiology of Unconventional Secretion
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Beyond the Secretory Pathway: New Insights Into Protein Release
While proteins bearing N-terminal signal or leader sequences are secreted via the ER-Golgi-plasma membrane axis of the conventional secretion pathway, many cytosolic proteins lacking signaling sequen...
https://onlinelibrary.wiley.com/doi/10.1111/tra.70022
27 days ago
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reposted by
Susan Gregurick
UK Centre for Ecology & Hydrology (UKCEH)
28 days ago
Long-term monitoring tells a story of change. For 80 years scientists have monitored Windermere and nearby lakes in Cumbria, tracking how climate change and pollution are reshaping our freshwater ecosystems. It’s one of the longest lake datasets anywhere in the world! 🌎 🧪 1/
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The updated Global Naturalized Alien Flora (GloNAF 2.0) database - Davis - 2025 - Ecology - Wiley Online Library
esajournals.onlinelibrary.wiley.com/doi/10.1002/...
nice to see updates improving accessibility, standards and support for data reuse in GloNAF 2.0 a resource for invasive vascular plants
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The updated Global Naturalized Alien Flora (GloNAF 2.0) database
GloNAF is a continuously updated, curated compilation of alien naturalized vascular plant inventories for geographic regions worldwide. Building on its predecessor, GloNAF 2.0 now contains 16,429 tax....
https://esajournals.onlinelibrary.wiley.com/doi/10.1002/ecy.70245
28 days ago
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Artificial Intelligence Networks Combining Histopathology and Machine Learning Can Extract Axon Pathology in Autism Spectrum Disorder . Authors developed custom transfer learning processes and protocols to distinguishing high-resolution microscopic images of myelinated axons in white matter pathways
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Artificial Intelligence Networks Combining Histopathology and Machine Learning Can Extract Axon Pathology in Autism Spectrum Disorder
Axon features that underlie the structural and functional organization of cortical pathways have distinct patterns in the brains of neurotypical controls (CTR) compared to individuals with Autism Spe....
https://onlinelibrary.wiley.com/doi/10.1002/aur.70135
about 1 month ago
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The relationship between obesity and chronic kidney disease: conclusions from a Kidney Disease: Improving Global Outcomes (KDIGO) Controversies Conference - Kidney International
www.kidney-international.org/article/S008...
🧪 just out and worth reading.
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The relationship between obesity and chronic kidney disease: conclusions from a Kidney Disease: Improving Global Outcomes (KDIGO) Controversies Conference
Obesity and chronic kidney disease (CKD) are complex diseases that are interlinked directly and indirectly. In October 2024, Kidney Disease: Improving Global Outcomes (KDIGO) held a Controversies Conf...
https://www.kidney-international.org/article/S0085-2538%2825%2900774-4/fulltext
about 1 month ago
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pubs.acs.org/doi/10.1021/...
neat work on a probabilistic machine learning framework to estimate total or partial RDFs with uncertainty quantification from background and inelastic corrected scattering data. The results could help with folks interested in molecular force field optimization.
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Physics-Informed Gaussian Process Inference of Liquid Structure from Scattering Data
We present a nonparametric Bayesian framework to infer radial distribution functions from experimental scattering measurements with uncertainty quantification using nonstationary Gaussian processes. The Gaussian process prior mean and kernel functions are designed to mitigate well-known numerical challenges with the Fourier transform, including discrete measurement binning and detector windowing, while encoding fundamental yet minimal physical knowledge of the liquid structure. We demonstrate uncertainty propagation of the Gaussian process posterior to unmeasured quantities of interest. Experimental radial distribution functions of liquid argon and water with uncertainty quantification are provided as both a proof of principle for the method and a benchmark for molecular models.
https://pubs.acs.org/doi/10.1021/acs.jpcb.5c05024
about 1 month ago
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Paratyphoid fever and relapsing fever in 1812 Napoleon's devastated army: Current Biology
www.cell.com/current-biol...
new meta genomics study reveal pathogens that contributed to the devastation of Napoleon's Grande Armée during its disastrous retreat from Russia in 1812.
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Paratyphoid fever and relapsing fever in 1812 Napoleon's devastated army
By implementing a phylogeny-driven approach for authenticating ultra-low-coverage pathogen aDNA, Barbieri et al. detect Salmonella enterica Paratyphi C and Borrelia recurrentis, agents of paratyphoid ...
https://www.cell.com/current-biology/fulltext/S0960-9822%2825%2901247-3
about 1 month ago
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link.springer.com/article/10.1...
. study analyzes feature extraction methods, including morphological gray matter, structural connectivity and functional connectivity to investigate neurodegenerative diseases. It’s a good analysis of graph methodologies to characterize individual brain networks.🧪
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Evaluating topological and graph-theoretical approaches to extract complex multimodal brain connectivity patterns in multiple sclerosis - Health Information Science and Systems
Brain networks, or graphs, derived from magnetic resonance imaging (MRI) offer a powerful framework for representing the structural, morphological, and functional organization of the brain. Graph-theo...
https://link.springer.com/article/10.1007/s13755-025-00386-y
about 1 month ago
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advanced.onlinelibrary.wiley.com/doi/10.1002/...
cool printable sweat sensor for metabolomics biomarkers measurements 🧪🧪
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Printed Wearable Sweat Rate Sensor for Continuous In Situ Perspiration Measurement
A wireless wearable sweat rate sensor system is presented, featuring digital 3D direct-write printing on a flexible substrate with microfluidic layers for continuous, real-time monitoring. Printed en....
https://advanced.onlinelibrary.wiley.com/doi/10.1002/aisy.202400927
about 1 month ago
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www.nature.com/articles/s41...
Study add to the growing body of evidence that links periodontitis to long-term cardiovascular consequences in T2D
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Increased cardiovascular risk in people with type 2 diabetes and periodontitis: an analysis from a global real-world federated database - British Dental Journal
British Dental Journal - Increased cardiovascular risk in people with type 2 diabetes and periodontitis: an analysis from a global real-world federated database
https://www.nature.com/articles/s41415-025-8889-7
about 1 month ago
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EndoCompass project: artificial intelligence in endocrinology url:
academic.oup.com/ejendo/artic...
. This is a joint initiative between the European Society of Endocrinology and the European Society of Paediatric Endocrinology, to identify & promote research priorities in endocrine science.🧪
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EndoCompass project: artificial intelligence in endocrinology
AbstractBackground. Endocrine science remains underrepresented in European Union research programs despite the fundamental role of hormone health in human
https://academic.oup.com/ejendo/article/193/Supplement_2/ii170/8281955
about 2 months ago
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PET-MRI biomarkers reveal efficacy of a novel NLRP3 inhibitor in Parkinson’s disease models url:
academic.oup.com/brain/articl...
nice work highlighting the highlight use of PET/MRI as a non-invasive tool to evaluate drug efficacy 🧪
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PET-MRI biomarkers reveal efficacy of a novel NLRP3 inhibitor in Parkinson’s disease models
Albornoz et al. show using advanced imaging techniques that MCC7840—a novel NLRP3 inflammasome inhibitor—reduces neuroinflammation and protects dopaminergi
https://academic.oup.com/brain/article/doi/10.1093/brain/awaf372/8287312
about 2 months ago
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www.ahajournals.org/doi/10.1161/...
. Study finds ACE2 is causally protective for hypertension and diabetes. This suggests that ACE2 treatment may provide additional protection from these cardiovascular diseases.🧪
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Circulating Cardiovascular Proteomic Associations With Genetics and Disease | Circulation: Genomic and Precision Medicine
BACKGROUND: The analysis of the circulating proteome can identify translational modifiers and biomarkers of disease expressivity and severity at a given time point. Here, we explore the relationships ...
https://www.ahajournals.org/doi/10.1161/CIRCGEN.124.005005
about 2 months ago
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www.frontiersin.org/journals/nut...
. Really interesting review. 🧪
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Frontiers | Immunomodulatory role of vitamin D and emerging immunotherapies in hepatocellular carcinoma
Hepatocellular carcinoma (HCC) is one of the most common cancers globally, with nearly 1 million new cases diagnosed annually. It is a complex disease, with ...
https://www.frontiersin.org/journals/nutrition/articles/10.3389/fnut.2025.1611829/full
2 months ago
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onlinelibrary.wiley.com/doi/10.1002/...
. Nice study on a mobile health app for Chronic low back pain treatment 🧪
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Mobile Health (mHealth) for Chronic Low Back Pain Assessment: Design, Development, and Usability Evaluation
This study introduces a mobile health (mHealth) system for chronic low back pain (cLBP) assessment, involving in-clinic and at-home apps to collect comprehensive data from 1000 individuals. Usability....
https://onlinelibrary.wiley.com/doi/10.1002/jsp2.70118
2 months ago
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www.jacc.org/doi/10.1016/...
. Import results “the evidence linking inflammation with atherosclerotic CVD is no longer exploratory but is compelling and clinically actionable.” 🧪
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Inflammation and Cardiovascular Disease: 2025 ACC Scientific Statement: A Report of the American College of Cardiology
https://www.jacc.org/doi/10.1016/j.jacc.2025.08.047
2 months ago
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Allergen Chip Challenge: a nationwide open database supporting allergy prediction algorithms - Journal of Allergy and Clinical Immunology
www.jacionline.org/article/S009...
. nationwide, open database of allergen chip, demographic and clinical information
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Allergen Chip Challenge: a nationwide open database supporting allergy prediction algorithms
Graphical abstract: 1
https://www.jacionline.org/article/S0091-6749%2825%2900981-9/fulltext
2 months ago
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iopscience.iop.org/article/10.3...
🧪. Very exciting article on exoplanetary atmospheres
3 months ago
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www.nature.com/articles/s41...
🧪. Large study of over 1m quantifies the independent associations of albuminuria and eGFR with the incidence of overall cancer, and among selected site-specific cancers, using data from eligible cohorts in the Chronic Kidney Disease Prognosis Consortium (CKD-PC).
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Chronic kidney disease and incident cancer risk: an individual participant data meta-analysis - British Journal of Cancer
British Journal of Cancer - Chronic kidney disease and incident cancer risk: an individual participant data meta-analysis
https://www.nature.com/articles/s41416-025-03140-z
3 months ago
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www.cell.com/biophysj/abs...
. 🧪 nice work from Jeremey smith at ORNL discuss the role of MD and ML/AI to overcome lignocellulose recalcitrance by designing pretreatment methods to efficiently produce solubilized cellulose/lignin/hemicellulose, and improve energy-intensive manufacturing challenges.
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Molecular Simulation and Artificial Intelligence for the Circular Economy of Bioenergy and Bioproducts
The concept of the circular bioeconomy is a carbon neutral, sustainable system with zero waste. One vision for such an economy is based upon lignocellulosic biomass. This lignocellulosic circular bioe...
https://www.cell.com/biophysj/abstract/S0006-3495(25)00570-3?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0006349525005703%3Fshowall%3Dtrue
3 months ago
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www.nature.com/articles/s41...
🧪. this study provides evidence indicating S. mutans can colonize the gut and affect PD pathology via microbial UrdA and its metabolite, imidazole propionate.
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Gut microbial production of imidazole propionate drives Parkinson’s pathologies - Nature Communications
Here, the authors show that the oral microbe Streptococcus mutans, elevated in the gut microbiome of Parkinson’s patients, produces imidazole propionate via UrdA that in mice reaches the brain and tri...
https://www.nature.com/articles/s41467-025-63473-4
3 months ago
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reposted by
Susan Gregurick
Shicheng Guo
3 months ago
Study reveals 90%^+ agreement between real-world amyloid-PET visual reads and quantification, aiding cognitive impairment diagnosis! 🧠 PMID:40720133, JAMA Neurol 2025, @JAMANeuro
https://doi.org/10.1001/jamaneurol.2025.2218
#Medsky
#Pharmsky
#RNA
#ASHG
#ESHG
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https://doi.org/10.1001/jamaneurol.2025.2218
No description available
https://doi.org/10.1001/jamaneurol.2025.2218
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add a skeleton here at some point
3 months ago
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reposted by
Susan Gregurick
link.springer.com/article/10.1...
Neat study finds that cholesterol metabolism was clearly altered in the TDP-43 proteinopathies of effected brains, pointing towards an accumulation of cholesterol esters and triglycerides in the form of lipid droplets
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TDP-43 dysregulation impairs cholesterol metabolism linked with myelination defects - Acta Neuropathologica
TDP-43 is a nuclear protein encoded by the TARDBP gene, which forms pathological aggregates in various neurodegenerative diseases, collectively known as TDP-43 proteinopathies, including amyotrophic l...
https://link.springer.com/article/10.1007/s00401-025-02927-x
3 months ago
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link.springer.com/article/10.1...
Neat study finds that cholesterol metabolism was clearly altered in the TDP-43 proteinopathies of effected brains, pointing towards an accumulation of cholesterol esters and triglycerides in the form of lipid droplets
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TDP-43 dysregulation impairs cholesterol metabolism linked with myelination defects - Acta Neuropathologica
TDP-43 is a nuclear protein encoded by the TARDBP gene, which forms pathological aggregates in various neurodegenerative diseases, collectively known as TDP-43 proteinopathies, including amyotrophic l...
https://link.springer.com/article/10.1007/s00401-025-02927-x
3 months ago
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reposted by
Susan Gregurick
PLOS Biology
3 months ago
What causes viral transmission bottlenecks? This study uses barcoded virions to show that in the case of
#influenza
A
#virus
, early within-host replication dynamics (rather than a reduced inoculum population) drive loss of diversity during transmission
@plosbiology.org
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plos.io/4ngicDK
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ojrd.biomedcentral.com/articles/10....
. A good read. 🧪
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Exploring the uncharted role of cell senescence in rare diseases - Orphanet Journal of Rare Diseases
Background Cellular senescence is a biological process in which the cell cycle is arrested in response to DNA damage caused by different endogenous and exogenous stimuli. In senescent cells, activatio...
https://ojrd.biomedcentral.com/articles/10.1186/s13023-025-03778-1
3 months ago
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movementecologyjournal.biomedcentral.com/articles/10....
Neat article on tiger adaptation and movement.
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Rest to roam: behavioural adaptations of tigers in anthropogenically altered landscapes - Movement Ecology
Background Large carnivores in human-dominated landscapes face significant risks from increased anthropogenic pressure, making it crucial to understand their movement behaviour for conservation strate...
https://movementecologyjournal.biomedcentral.com/articles/10.1186/s40462-025-00594-x
3 months ago
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Cardiovascular and kidney outcomes of GLP‐1 receptor agonists in adults with obesity: A target trial emulation study - Tang - Diabetes, Obesity and Metabolism - Wiley Online Library
dom-pubs.pericles-prod.literatumonline.com/doi/10.1111/...
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Error - Cookies Turned Off
https://dom-pubs.pericles-prod.literatumonline.com/doi/10.1111/dom.70054
3 months ago
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www.nature.com/articles/s43...
🧪 Interesting article on deep active optimization for low data problems. The back propagation out of local minima and benchmarks on finding tricky global minima using DNN is cool. The discussion on tradeoffs between Bayesian optimization and active optimization is cool
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Deep active optimization for complex systems - Nature Computational Science
This study introduces a deep active optimization pipeline that effectively tackles high-dimensional, complex problems with limited data. The approach minimizes sample size and surpasses existing metho...
https://www.nature.com/articles/s43588-025-00858-x
3 months ago
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www.nature.com/articles/s41...
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Machine learning to predict bacteriuria in the emergency department - Scientific Reports
Scientific Reports - Machine learning to predict bacteriuria in the emergency department
https://www.nature.com/articles/s41598-025-16677-z
3 months ago
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www.nature.com/articles/s41...
what a nice article highlighting deep learning methods to detect brood disease in honeybees
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Image-based honey bee larval viral and bacterial diagnosis using machine learning - Scientific Reports
Scientific Reports - Image-based honey bee larval viral and bacterial diagnosis using machine learning
https://www.nature.com/articles/s41598-025-16261-5
3 months ago
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link.springer.com/article/10.1...
🧪. Really interesting in particular the section on blood pressure control post thrombectomy
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Advances in Ischemic Stroke Treatment: Current and Future Therapies - Neurology and Therapy
This review summarizes current concepts in our understanding of stroke anatomy, pathophysiology of cerebral hypoperfusion, and collateral circulation. It also provides an evidence-based update in stro...
https://link.springer.com/article/10.1007/s40120-025-00810-1
4 months ago
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direct.mit.edu/imag/article...
🧪. Researchers illustrate that the presence of information is far more distributed across the brain than previously thought and that information is fairly accessible
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Widespread, perception-related information in the human brain scales with levels of consciousness
Abstract. How does the human brain generate coherent, subjective perceptions—transforming yellow and oblong visual sensory information into the perception of an edible banana? This is a hard problem. ...
https://direct.mit.edu/imag/article/doi/10.1162/imag_a_00240/123569/Widespread-perception-related-information-in-the
4 months ago
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open-research-europe.ec.europa.eu/articles/5-1...
🧪 unexpected and really fun read. I enjoyed the discussion on developing the ontology and use of Protégé. Makes me want to travel and try this out.
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https://open-research-europe.ec.europa.eu/articles/5-1/v2
4 months ago
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American College of Rheumatology Guidance Statement for Diagnosis and Management of VEXAS Developed by the International VEXAS Working Group Expert Panel - Mekinian - Arthritis & Rheumatology -
acrjournals.onlinelibrary.wiley.com/doi/10.1002/...
🧪 new clinical guidance for this rare disease
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American College of Rheumatology Guidance Statement for Diagnosis and Management of VEXAS Developed by the International VEXAS Working Group Expert Panel
Objective Vacuoles E1 enzyme X-linked autoinflammatory somatic syndrome (VEXAS) is a recently identified rare genetic disorder associated with somatic mutations in the UBA1 gene. VEXAS presents with...
https://acrjournals.onlinelibrary.wiley.com/doi/10.1002/art.43287
4 months ago
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GLP-1 RAs and Ophthalmic Complications in Patients With Type 2 Diabetes url:https://jamanetwork.com/journals/jamanetworkopen/fullarticle/2837378?utm_source=bluesky&utm_campaign=content-shareicons&utm_content=article_engagement&utm_medium=social&utm_term=081225 🧪
4 months ago
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www.nature.com/articles/s41...
🧪. Article highlights lithium depletion increases amyloid accumulation and Replacement therapy with Li salt prevents pathological changes and memory loss as seen in AD mouse models and ageing wild-type mice.
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Lithium deficiency and the onset of Alzheimer’s disease - Nature
Lithium has an essential role in the brain and is deficient early in Alzheimer’s disease, which can be recapitulated in mice and treated with a novel lithium salt that restores the physiological level...
https://www.nature.com/articles/s41586-025-09335-x
4 months ago
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onlinelibrary.wiley.com/doi/10.1002/...
🧪. lncRNAs have a fairly diverse set of functions and this is a good overview.
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The role of long non‐coding RNAs in lung cancer metastasis: Molecular mechanisms, pathogenesis and clinical implications
LncRNAs are localized in cytosol, nucleus, other sub-nuclear compartments, and exosomes in the cell, and play significant role in lung cancer dissemination based on their localizations. LncRNAs have ...
https://onlinelibrary.wiley.com/doi/10.1002/ctm2.70429
4 months ago
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Integrating Generative Pretrained Transformer and Genetic Algorithms for Efficient and Diverse Molecular Generation - Xu - 2025 -
onlinelibrary.wiley.com/doi/10.1002/...
Happy to see optimization with genetic algorithms and generative pretrained transformer for drug discovery 🧪
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Integrating Generative Pretrained Transformer and Genetic Algorithms for Efficient and Diverse Molecular Generation
Compound construction model combines the strengths of deep learning models in understanding complex patterns and the exploratory power of genetic algorithms in navigating the vast chemical space, aim...
https://onlinelibrary.wiley.com/doi/10.1002/minf.70005
4 months ago
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aacrjournals.org/cancerres/ar...
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Spatial Multi-omics Defines a Shared Tumor Infiltrative Signature at the Resection Margin in High-Grade Gliomas
Abstract. Despite genomic heterogeneity, most high-grade gliomas (HGG), including IDH-wildtype glioblastoma, display diffusely infiltrative growth, which impedes complete surgical resection and leads ...
https://aacrjournals.org/cancerres/article/doi/10.1158/0008-5472.CAN-24-4708/763956/Spatial-Multi-omics-Defines-a-Shared-Tumor
4 months ago
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www.jmir.org/2025/1/e74976
. 🧪. Very much worth a read.
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Enhancing Clinical Data Infrastructure for AI Research: Comparative Evaluation of Data Management Architectures
Background: The rapid growth of clinical data, driven by digital technologies and high-resolution sensors, presents significant challenges for health care organizations aiming to support advanced arti...
https://www.jmir.org/2025/1/e74976
4 months ago
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www.nature.com/articles/s41...
Might be of interest for biomarkers for diagnosis, therapeutic response prediction, and risk assessment
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A Large-Scale Dataset of Pre-Treatment TCR Repertoires in Colorectal Cancer Patients - Scientific Data
Scientific Data - A Large-Scale Dataset of Pre-Treatment TCR Repertoires in Colorectal Cancer Patients
https://www.nature.com/articles/s41597-025-05611-7
4 months ago
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www.sciencedirect.com/science/arti...
Interesting article on the ability of retinal imaging to detect the association of increased aging related to the prevalence of diabetes in schizophrenia patients
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The association of retinal age gap with schizophrenia: a cross-sectional analysis
https://www.sciencedirect.com/science/article/pii/S0920996425002683
4 months ago
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bmcmedicine.biomedcentral.com/articles/10....
Nice work using TEDDY data for a predictive model of type 1 diabetes risk validated in the TrialNet.
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Development and recalibration of a multivariable type 1 diabetes prediction model for type 1 diabetes across multiple screening studies - BMC Medicine
Background Accurate type 1 diabetes prediction is important to facilitate screening for pre-clinical type 1 diabetes to enable potential early disease-modifying interventions and to reduce the risk of...
https://bmcmedicine.biomedcentral.com/articles/10.1186/s12916-025-04225-5
4 months ago
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