Samuel Church
@shchurch.bsky.social
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evolutionary biologist at NYU Biology, lab website:
https://shchurch.github.io/
reposted by
Samuel Church
Patrick McKenzie
about 1 month ago
So cool to see our work highlighted here! Thanks
@botany.one
! And, re: the question โwere you one of the observers in our dataset,โ besides in the paper supplement, thereโs a full list of them here:
github.com/pmckenz1/mon...
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reposted by
Samuel Church
Casey Dunn
about 1 month ago
Ever wanted to assemble specific genes out of raw sequence reads? Try sharkmer, a tool for in silico PCR (sPCR) developed with
@shchurch.bsky.social
-
academic.oup.com/bioinformati...
. Feed it raw reads and primer sequences, it gives you amplicon sequences. Can work on a laptop in minutes.
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Sharkmer: repurposing PCR primers for targeted genome assembly using in silico PCR
AbstractSummary. We introduce an in silico PCR (sPCR) method for the assembly of specific genomic regions spanned by PCR primers using raw sequence reads.
https://academic.oup.com/bioinformatics/article/doi/10.1093/bioinformatics/btag163/8626953
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@caseywdunn.bsky.social
and I have a new tool for "in silico PCR" out in Bioinformatics: ๐ฆ sharkmer ๐ฆ With a subsample of raw reads and a few minutes, you can assemble your favorite barcode sequences! Try it out and let us know how we can make it better:
github.com/caseywdunn/s...
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about 1 month ago
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reposted by
Samuel Church
Ben Hopkins
2 months ago
Quick plug for our new resource, the Drosophila Species Stock Exchange. This is a database and mailing list that documents species currently in culture and the labs holding them. If you want to know more or sign up then please get in touch. See attached for more info and please share!
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reposted by
Samuel Church
Rebecca R Helm
4 months ago
Need a break from EVERYTHING?? Come join our free public talk this evening, where NYU professor Dr. Samuel Church will tell us all about his hunt for new blue bottle (man-o-war) species ๐ชผ๐งช๐๐ฆ 7:30 PM (EST) Zoom link:
u-tokyo-ac-jp.zoom.us/j/8337406906...
Meeting ID: 833 7406 9068 Passcode: 430292
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reposted by
Samuel Church
Jeremy M. Brown
4 months ago
Applications are now open for the 2026 Workshop on Molecular Evolution (MOLE)!
www.mbl.edu/education/ad...
Claudia Solis-Lemus and I will be holding an informational session on Zoom next Wed (1/21) from 10:30-11:30 AM Central for those interested:
lsu.zoom.us/j/4968115684
Deadline to apply: 1/26
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Workshop on Molecular Evolution | Marine Biological Laboratory
The workshop serves graduate students, postdocs, and established faculty from around the world seeking to apply the principles of molecular evolution to questions of anthropology, conservation genetic...
https://www.mbl.edu/education/advanced-research-training-courses/course-offerings/workshop-molecular-evolution
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reposted by
Samuel Church
Casey Dunn
4 months ago
Our eLetter
github.com/caseywdunn/s...
responding to a recent Science paper was just posted. The paper found more genes with consistent support for sponge-sister than ctenophore-sister. We found several technical issues that, when corrected, reverse the conclusions and recover ctenophore-sister.
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The Church Evolution Lab (CEL@NYU) is hiring a postdoc! We have several new projects to study the genomic basis of biodiversity in model clades โย especially Hawaiian Drosophila.
apply.interfolio.com/179354
Come join our new group, you can study bugs and live in NYC! Feel free to share widely!
5 months ago
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It was amazing to be part of this cool natural history project led by
@patrickmckenzie.bsky.social
, and Iโm so happy I can now say I have worked on plants!
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6 months ago
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reposted by
Samuel Church
Li Zhao
6 months ago
Our NY area population genetics meeting is back and "upgraded", as Simons Foundation
@simonsfoundation.org
generously agreed to host. Please save the date: March 9, 2026. Look forward to seeing many of you from NY and beyond.
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reposted by
Samuel Church
Tom Iwanicki
6 months ago
In our last thread, we left the jelly-enjoyers of Bluesky with a cliff hanger ending, in what one eager onlooker described as soap opera science ๐ ... wait no more, we are back! Grab your popcorn shrimp and come with us on a journey spanning more than...
bsky.app/profile/iwan...
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Still a few days left to apply for this Assistant Professor position in our department at NYU:
apply.interfolio.com/175592
Please pass the word around, if you know of someone at the interface of ecology, evolution, and disease!
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Apply - Interfolio {{$ctrl.$state.data.pageTitle}} - Apply - Interfolio
https://apply.interfolio.com/175592
6 months ago
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Samuel Church
Matt Rockman
8 months ago
C. elegans is a real animal and we set out to understand how it comes to have its distinctive biogeography. Its ancestral center of diversity is in the higher elevation forests of Hawaii. Its closest relatives are spread across east Asia. Did they travel from Asia? [Preprint ๐งต]
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The Church Evolution Laboratory (CEL@NYU) will be official as of Sep 1st:
shchurch.github.io
. We are recruiting at all levels, including a postdoc to work on evolutionary patterns and processes via comparative genomics in Hawaiian Drosophila. Please share widely!
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Church Evolution Laboratory
Department of Biology, New York City
https://shchurch.github.io
9 months ago
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Such cool work by
@rbabedon.bsky.social
! These results came from his awesome senior thesis on Atlantic man-o-war dispersal. He found iNat (
@inaturalist.bsky.social
) records of young colonies, they look like tiny living bubbles before they grow into the sailing giants we sometimes see further North
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9 months ago
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Samuel Church
River B Abedon
9 months ago
Check out our preprint ๐งช on the origin & dispersal dynamics of a sailing โต
#siphonophore
! We use
#iNaturalist
and particle tracking simulations to show that juvenile man o' war surface in the Gulf of Mexico & Straits of FL and disperse rapidly along the Gulf Stream ๐
www.biorxiv.org/content/10.1...
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From surfacing to stranding: The origins and dispersal dynamics of a neustonic siphonophore
The siphonophore Physalia physalis regularly strands along the US East Coast, yet the dynamics driving its seasonal and geographic distribution in this region remain poorly understood. Building on a n...
https://www.biorxiv.org/content/10.1101/2025.08.13.669909v1
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reposted by
Samuel Church
Yamuna Krishnan
9 months ago
A big blow to All of Science, not just Harvard, not just the Fly community, not just Genetics. All of Science. Turbocharge was just switched off. Flies gave us so many insights.
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reposted by
Samuel Church
Pawel Burkhardt
10 months ago
Marine biodiversity: Gone with the wind? Our dispatch out now in
@currentbiology.bsky.social
New research shows that wind and currents act as invisible barriers, reshaping our view of ocean connectivity. ๐๐ชผ
authors.elsevier.com/a/1lYLj3QW8S...
@iramaegele.bsky.social
@msarscentre.bsky.social
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Wish I could be at
#Evol2025
this year! Iโll be starting a new lab at NYU this fall, and will be recruiting at all levels. Please spread the word if you know anyone who wants to work on evo. genomics, phylogenies, and comparative development of inverts (like Hawaiian Drosophila!)
shchurch.github.io
11 months ago
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Excited to share our study on sailing siphonophores, AKA bluebottles or man-o'-war! ๐ we received hundreds of samples from scientists around the world, part of a huge effort to sequence genomes and test for multiple species ๐งฌ out today in
@currentbiology.bsky.social
doi.org/10.1016/j.cu...
๐ฆ๐งช๐
11 months ago
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reposted by
Samuel Church
Patrick McKenzie
12 months ago
New preprint out today! A really fun collaboration with
@shchurch.bsky.social
and Robin Hopkins in which we study flower color variation in Monarda fistulosa using iNaturalist data. We process >40,000 images and use them to phenotype flower color in >16,000 observations:
doi.org/10.1101/2025...
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