Great presentation! Just FYI: It is a little known fact that the MS1 quantification by CHIMERYS on the MSAID Platform works by deconvoluting isotope envelopes in a similar way as JMod since the inception of the platform a year ago. If you are interested in 9-plex DIA support, feel free to reach out!

Excited to see this published! It is a good step in the process for people to assess their FDR control in proteomics experiments. Great work from @bo-wen.bsky.social and @urikeich.bsky.social in particular who drove this.

#TeamMassSpec, don't miss my talk about double dipping in DIA data analysis on Tuesday afternoon at #ASMS2025! It's not as savoury as the one below, but will contain a couple of spicy takes. 🙃

Only one week left for #ASMS2025! Join us for our talk on accurate and fast zero-shot peptide spectrum prediction, featuring a deep learning approach that predicts fragment ion intensities—even for peptides with unseen post-translational modifications. 🔗 www.msaid.de/conferences/... #TeamMassSpec

This is great news for researchers that value data security and privacy when processing proteomics data on-premises and in the cloud! ☁️💻📱

CHIMERYS is a spectrum-centric and data acquisition method-agnostic algorithm that deconvolves any MS2 spectrum, regardless of whether it was acquired by DDA, DIA or PRM, thus unifying analysis of bottom-up proteomics data. @msaid-de.bsky.social @kusterlab.bsky.social www.nature.com/articles/s41...

So glad to see our paper describing #CHIMERYS finally published in @naturemethods.bsky.social ! Check it out!

Join us for our upcoming webinar, where we will introduce the latest features of the MSAID Platform, a web-based, fully automated solution for #proteomics data processing, storage, and analysis—powered by CHIMERYS™ 4. 📅 April 1 | 🕒 17:00 🔗 Register here: events.teams.microsoft.com/event/26ff8b...

I am happy that our first publication showcasing the MSAID Platform is out! Read all about its unique features or try it for free at platform.msaid.io!

🧪 Join us for a lesson in how to look at your spectra from Sue Weintraub! Using examples from her research, Sue will highlight the importance of looking at mass spectra and teach you how to get started. You won't want to miss it! Register now: ow.ly/P8fw50UrX6m

I have a radical idea. All DIA tool developers meet in Geneva for a convention and agree to apply certain additional conservative quality filters by default (so yeah, not 10k proteins but “just” 8k…). And then provide users an option to relax the filters at their own risk. Not the other way around.