James McDonald
@jamesemcdonald.bsky.social
📤 982
📥 839
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Prof. of microbial ecology at the University of Birmingham. Decoding the tree microbiome 🌳🌲. He/him
pinned post!
🧵 New preprint alert! From the Future Oak project, led by
@cenococcum.bsky.social
Landscape-scale impacts of environment and disease on the tree microbiome 🌳🦠
www.biorxiv.org/content/10.1...
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Environment and disease have tissue-specific effects on the tree microbiome
Trees are essential for ecosystem function, but due to their long lifespan, are disproportionately impacted by climate change and disease. Tree-associated microbiota are critical for tree health and r...
https://www.biorxiv.org/content/10.1101/2025.08.15.670310v1
3 months ago
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Had a great week at
#PSM2025
- excellent science, great organisation, and super friendly people. Really enjoyed presenting our work on the oak microbiome and leaving here with lots of ideas for future work and collaborations. Thanks
@vcarryon.bsky.social
& team for organising
@microsos.bsky.social
about 4 hours ago
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A pause on the live posts from
@evolvedbiofilm.bsky.social
as he is on stage giving the next presentation at
#PSM2025
on single species and community living of Bacillus on plants
@microsos.bsky.social
1 day ago
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reposted by
James McDonald
Ákos T Kovács
3 days ago
Thank you, Dirk-Jan! We indeed enjoyed it with our Birmingham-Leiden collaboration group! (Not tapas but restaurant part) -with
@marccamb.bsky.social
@jamesemcdonald.bsky.social
@xinmingxu.bsky.social
and María Negre Rodríguez
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@vcarryon.bsky.social
opening
#PSM2025
4 days ago
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Great to be at
#PMS2025
in Malaga. Looking forward to 5 days of science and giving a presentation on our group’s work on Thursday (session 4)
4 days ago
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reposted by
James McDonald
Paul Carini
22 days ago
New paper: Dried soil bacteria enter dormancy with "frozen" RNA & metabolite profiles—but water vapor alone can wake them up!
#Microbiology
#SoilScience
#Dormancy
#ClimateChange
#MicroSky
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reposted by
James McDonald
Applied Microbiology International
25 days ago
Have research, results, or ideas to share with the microbial ecology community? Don’t miss your chance to present it at
#MMEG2025
- abstract submissions close 2 November! 📨 Submit your abstract:
appliedmicrobiology.org/ems-event-ca...
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Really Nice work by
@evolvedbiofilm.bsky.social
and colleagues
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29 days ago
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MMEG is coming to
@unibirmingham.bsky.social
in December - look out for some exciting announcements about the programme in the next few weeks! Abstract submission and registration is open 👇🏻
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about 1 month ago
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reposted by
James McDonald
Applied Microbiology International
2 months ago
Save the Date:
#MMEG2025
is coming to Birmingham! Join us on 15–16 December 2025 for the 31st edition of MMEG. This year's event is your chance to: 🔬 Share your research 🤝 Connect with peers 🦠 Discover the latest in molecular microbial ecology Register now:
appliedmicrobiology.org/ems-event-ca...
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reposted by
James McDonald
Ákos T Kovács
about 2 months ago
New preprint from the lab by Adele Pioppi on her
#NNF_INTERACT
project Successive cultivation under drought selects for specific microbiome members in the wheat rhizosphere
www.biorxiv.org/content/10.1...
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reposted by
James McDonald
🧵 New preprint alert! From the Future Oak project, led by
@cenococcum.bsky.social
Landscape-scale impacts of environment and disease on the tree microbiome 🌳🦠
www.biorxiv.org/content/10.1...
loading . . .
Environment and disease have tissue-specific effects on the tree microbiome
Trees are essential for ecosystem function, but due to their long lifespan, are disproportionately impacted by climate change and disease. Tree-associated microbiota are critical for tree health and r...
https://www.biorxiv.org/content/10.1101/2025.08.15.670310v1
3 months ago
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reposted by
James McDonald
Alan McNally
2 months ago
We have a position for an Assist Prof in Microbial Genomics in our School of III. Hod Joan Geoghegan will be happy to field questions if you are interested. No specific area of microbial genomics preferred so please do consider it
www.jobs.ac.uk/job/DOO184/a...
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Assistant Professor (Research and Education) in Bacterial Genomics at University of Birmingham
Apply now for the Assistant Professor (Research and Education) in Bacterial Genomics role on jobs.ac.uk - the leading job board for higher education jobs. View details.
https://www.jobs.ac.uk/job/DOO184/assistant-professor-research-and-education-in-bacterial-genomics
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reposted by
James McDonald
Microbiology Society
2 months ago
Our newest title, Microbiology Outlooks is now open to submissions! If you have a review, perspective, or commentary to contribute, submit to this forward-looking journal covering all areas of microbiology research:
microb.io/Mout
.
#NewJournal
#Mout
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Check out our new preprint on
@biorxiv-microbiol.bsky.social
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3 months ago
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reposted by
James McDonald
Ákos T Kovács
3 months ago
See how phi3T phage shifts Bacillus subtilis cell shape in the absence of SPbeta prophage and alters its fitness - our new publication in
@commsbio.nature.com
from group of
@annadragos.bsky.social
together with
@bramkamplab.bsky.social
www.nature.com/articles/s42...
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reposted by
James McDonald
Marine C. Cambon
3 months ago
Go and check out the pre-print of the landscape-scale tree microbiome study from the Future Oak project. Huge amounts of efforts and talent went into this work, with a pinch of "this is crazy, but we can do it". Well done
@jamesemcdonald.bsky.social
@cenococcum.bsky.social
et al. Thread below 👇
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🧵 New preprint alert! From the Future Oak project, led by
@cenococcum.bsky.social
Landscape-scale impacts of environment and disease on the tree microbiome 🌳🦠
www.biorxiv.org/content/10.1...
loading . . .
Environment and disease have tissue-specific effects on the tree microbiome
Trees are essential for ecosystem function, but due to their long lifespan, are disproportionately impacted by climate change and disease. Tree-associated microbiota are critical for tree health and r...
https://www.biorxiv.org/content/10.1101/2025.08.15.670310v1
3 months ago
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Had a great day out with the team at Black County Museum yesterday. Lucky to work with such a great group of scientists and people 🌞🍦
@g-thomas.bsky.social
@alejandra1909.bsky.social
@sophie-e-powell.bsky.social
@alexanderwoodley.bsky.social
@marccamb.bsky.social
@bpettifor.bsky.social
3 months ago
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Really exciting and important tree microbiome paper published in
@nature.com
‘A diverse and distinct microbiome inside living trees’ 👏
www.nature.com/articles/s41...
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A diverse and distinct microbiome inside living trees - Nature
Microbiome analyses of living trees show that a single tree can host approximately one trillion bacteria, with microbial communities distinctly partitioned between heartwood and sapwood and with minim...
https://www.nature.com/articles/s41586-025-09316-0
3 months ago
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Really pleased to be involved in this exciting project led by
@hendrikschaefer.bsky.social
!
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3 months ago
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Wonderful day
@bangoruniversity.bsky.social
Huge congratulations to Dr.
@alejandra1909.bsky.social
for passing her viva with minor corrections. Thanks to Carrie Brady and
@mojganrabiey.bsky.social
for examining and George Turner for chairing. Look out for some cool papers in the near future!
4 months ago
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reposted by
James McDonald
Ákos T Kovács
4 months ago
See our review on SynComs for tree microbiome engineering by
@marccamb.bsky.social
@xinmingxu.bsky.social
@sofiaifgomes.bsky.social
@jamesemcdonald.bsky.social
seed grant between
@imibirmingham.bsky.social
@unibirmingham.bsky.social
&
@unileiden.bsky.social
www.sciencedirect.com/science/arti...
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New
#openaccess
opinion piece, the first of our brilliant collaboration with
@evolvedbiofilm.bsky.social
@sofiaifgomes.bsky.social
@xinmingxu.bsky.social
&
@marccamb.bsky.social
- thanks to
@unibirmingham.bsky.social
and
@unileiden.bsky.social
for funding!
www.sciencedirect.com/science/arti...
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Synthetic microbial communities for studying and engineering the tree microbiome: challenges and opportunities
Trees are essential to ecosystems in both natural and urban environments, yet they are increasingly threatened by abiotic and biotic stresses linked t…
https://www.sciencedirect.com/science/article/pii/S136952742500058X?via%3Dihub
4 months ago
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reposted by
James McDonald
Institute of Microbiology and Infection
4 months ago
Huge congratulations to IMI's Prof Robin May
@robinmay9.bsky.social
who has been appointed as UKHSA's
@ukhsa.bsky.social
Interim Chief Scientific Officer - excellent choice! 🎉
www.gov.uk/government/n...
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Professor Robin May to join UKHSA as Chief Scientific Officer
UKHSA has appointed Professor Robin May as Interim Chief Scientific Officer.
https://www.gov.uk/government/news/professor-robin-may-to-join-ukhsa-as-chief-scientific-officer
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Always a great day at
@unibirmingham.bsky.social
graduation. Congratulations to all of the School of Biosciences 2025 graduates - and great to see Becca get her degree after being an excellent project student in our lab this year 👏
4 months ago
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If you’re at
#2025ISMPMI
, drop by
@alejandra1909.bsky.social
‘s poster. Some really cool results on pathogen suppression using syncoms in trees
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4 months ago
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Final talk of today’s symposium.
@rosasanchezlucas.bsky.social
presents work from Estrella Luna-Diez’s lab on tree defences
@unibirmingham.bsky.social
@unileiden.bsky.social
#BhamLeidenpartnership
4 months ago
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Really nice talk on developing synthetic microbial communities for plant growth (with a fantastic title slide!) by
@xinmingxu.bsky.social
@unibirmingham.bsky.social
@unileiden.bsky.social
#BhamLeidenpartnership
4 months ago
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@dmvinchirav.bsky.social
and Vanja Milenkovic present some really excited findings on metabolites associated with drought stress and disease in oak
@unibirmingham.bsky.social
@unileiden.bsky.social
#BhamLeidenpartnership
4 months ago
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Next up, Rachel Calder presents her PhD research on the impact of elevated CO2 on forest soil fungal communities
#BIFoR
@unibirmingham.bsky.social
@unileiden.bsky.social
#BhamLeidenpartnership
4 months ago
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@evolvedbiofilm.bsky.social
presenting his group’s work on Bacillus - Pseudomonas interactions. A really comprehensive body of work on the influence of metabolites on the outcome of interactions
@unibirmingham.bsky.social
@unileiden.bsky.social
4 months ago
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We are holding a mini symposium on plant-microbe interactions
@unibirmingham.bsky.social
today as part of our strategic partnership with
@unileiden.bsky.social
- exciting talks by Alice Gauthey and
@sofiaifgomes.bsky.social
4 months ago
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reposted by
James McDonald
Ákos T Kovács
5 months ago
Bartje in Birmingham discussing on microbiomes and potential collaborations - a visit supported by a Birmingham-Leiden collaborative seed grant with
@jamesemcdonald.bsky.social
@unibirmingham.bsky.social
@unileiden.bsky.social
@leidenscience.bsky.social
#BartjeAroundTheWorld
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Nice hilltop walk to end the day after finalising a grant submission and a paper acceptance
#treehealth
5 months ago
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Fascinating talk by
@friendlymicrobe.bsky.social
at today’s
@imibirmingham.bsky.social
seminar. Really cool work on discovery of ancientbiotics for biofilm treatment.
5 months ago
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Having a great week in the USA visiting forests across different states to discuss forest health and forest product production. Next stop Louisiana …
@imibirmingham.bsky.social
#BIFoR
6 months ago
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reposted by
James McDonald
Emily White
7 months ago
Come and work with me! The Nature Micro team is expanding and we're looking for someone to champion microbial ecology, plant micro & related areas for the journal Knowledge of microbial ecology/plant micro is desirable but we're open to applications from all microbiologists Link below 👇
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reposted by
James McDonald
Microbiology Society
7 months ago
Applications are now open for positions on our Advisory Council, Committees, Divisions, and Members Panel. Increase your professional development and networking opportunities while getting more involved with the Society's community:
microb.io/GovernanceVacancies2025
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Governance vacancies
All the information regarding our current governance vacancies can be found on this page.
https://microb.io/GovernanceVacancies2025
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The UK Molecular Microbial Ecology Group (MMEG) meeting is on bluesky
@mmeg2025.bsky.social
- give us a follow! News of this year’s meeting to be held at The University of Birmingham to follow soon…
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MMEG 2025 (@mmeg2025.bsky.social)
Molecular Microbial Ecology Group (MMEG) 2025 meeting will be held at the University of Birmingham
https://mmeg2025.bsky.social
7 months ago
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reposted by
James McDonald
Marine C. Cambon
7 months ago
I am a bit late, but very proud of the achievements of Dr. Hussain who was my first co-supervised PhD researcher and brilliantly passed his viva. Well done Usman for processing thousands of samples to bring some fascinating insights on the resilience of oak tree microbiomes.
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Big congratulations to Dr. Usman Hussain on his successful PhD defence yesterday! A tour-de-force in abiotic impacts on the oak microbiota. Thanks to Corinne Whitby and Alex Papadopulos and co- supervisors
@marccamb.bsky.social
and Amy Ellison
7 months ago
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reposted by
James McDonald
Institute of Microbiology and Infection
7 months ago
First up at 9am today at
#Microbio25
is Prof Lindsay Hall
@halllab.bsky.social
winner of the Peter Wildy prize, the award recognises excellence in science communication, outreach and engagement in the field of microbiology – congrats Lindsay 🎉
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reposted by
James McDonald
Fiona J Whelan
7 months ago
So glad to be here at
#microbio25
! Very important opening words: “publishing 1 paper with us allows 4 students to attend this AC for free”
#publishforthecommunity
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Thanks for the excellent hospitality and discussions
@evolvedbiofilm.bsky.social
@sofiaifgomes.bsky.social
and colleagues - look forward to hosting you
@imibirmingham.bsky.social
soon
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8 months ago
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reposted by
James McDonald
Ákos T Kovács
8 months ago
@jamesemcdonald.bsky.social
and
@marccamb.bsky.social
from
@imibirmingham.bsky.social
visiting us at
#LeidenBiology
for discussing collaborations, so we organized a Mini Symposium on plant-microbe research, with
@dinglab.bsky.social
, Salma Balazadeh, &
@kostasgeo.bsky.social
from IBL
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It’s important to normalise setbacks in research. This week we had another grant rejection. It’s always disappointing, but also an opportunity to learn, grow and refine your strategy for the future.
8 months ago
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reposted by
James McDonald
Michael Brockhurst
9 months ago
☎️ Calling
#MEvoSky
☎️ 2x 5-year research associate / research assistant positions in experimental evolution ERC-funded project: How do mobile genetic elements and defence systems shape bacterial genome evolution? Join the friendly and exciting
@mermanchester.bsky.social
community in Manchester!
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@imibirmingham.bsky.social
starter pack has dropped 👇🏻
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9 months ago
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Great to end the week with a paper accepted in Environmental Microbiome 😀
10 months ago
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