Vojtech Spiwok
@spiwokv.bsky.social
📤 819
📥 1956
📝 127
Molecular modeling, simulations, metadynamics, machine learning
pinned post!
Our first protein design paper out in Protein Science
onlinelibrary.wiley.com/doi/10.1002/...
3 months ago
3
14
4
reposted by
Vojtech Spiwok
Klara Hlouchova lab
about 2 months ago
Can proteins fold and function with half of the amino acid alphabet? Using only 10 residues, we designed stable, mutation-resilient structures—no aromatics or basics involved. A minimalist foundation for ancient biology and synthetic design.
tinyurl.com/37t8br4v
#ProteinDesign
#OriginsOfLife
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Ancient amino acid sets enable stable protein folds
Early proteins likely arose from a chemically limited set of amino acids available through prebiotic chemistry, raising a central question in molecular evolution: could such primitive compositions yie...
https://tinyurl.com/37t8br4v
0
9
3
reposted by
Vojtech Spiwok
2 months ago
22nd Structural Biology Club online on 26th November 2025, 1pm CE: Structures in solution: BioSAXS at BM29 ESRF by Petra Pernot & Cryo-EM data processing in CCP-EM Doppio by Colin M. Palmer
cssb.structbio.org/22nd-structu...
0
8
4
Homology modeling
3 months ago
0
5
1
reposted by
Vojtech Spiwok
3 months ago
Protein Production Hands-On Workshop Dates: December 2 – 4, 2025 Venue: BIOCEV, Vestec Registration Deadline: October 31, 2025 Cost: Free of charge (accommodation not included) Registration Link:
forms.biocev.org/index.php/14...
Workshop Page:
www.ibt.cas.cz/en/core-faci...
0
5
4
Our first protein design paper out in Protein Science
onlinelibrary.wiley.com/doi/10.1002/...
3 months ago
3
14
4
Pranam Chatterjee
@pranam.bsky.social
and his first AI-generated baby
#CecamLLMLugano
3 months ago
0
2
0
Traveling to "Generative AI and large language models for protein modeling across sequence-structure-function scales : From predicting protein dynamics to programmable biology and drug design" in Lugano
#CecamAILugano
@cecamevents.bsky.social
3 months ago
2
10
0
Max Bonomi
@bonomimax.bsky.social
on IDP modeling by AI
@cecamevents.bsky.social
#CecamLLMLugano
3 months ago
0
5
1
Prof. Michele Vendruscolo Dr. Zsuzsanna Dosztányi ML4NGP Connect series, organized as part of the ongoing activities of the ELIXIR 3D-BioInfo Community and in collaboration with ISCB and 3DSIG. 📢 Date & Time: 30 September 2025 | 17:00-18:00 CEST Online
elixir-europe.org/events/unstr...
4 months ago
0
8
0
Happy birthday ČSBMB
#CSBMB2025
4 months ago
0
3
1
Hana Cahová (
@iocbprague.bsky.social
) awarded a medal by CSBMB
#CSBMB2025
4 months ago
0
4
1
Kickoff of XXVIII-th congress of the Czech Society for Biochemistry and Molecular Biology (
@febspress.bsky.social
member )
4 months ago
1
0
0
reposted by
Vojtech Spiwok
Instruct-ERIC
4 months ago
Instruct Director Harald Schwalbe will be in Denmark for the SBiNLab’s 25th anniversary!
www1.bio.ku.dk/english/rese...
@schwalbe-lab.bsky.social
Researchers in Denmark can receive access to Instruct technologies and instrumentation here -
instruct-eric.org/submit-propo...
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New Horizons in Protein Dynamics – Department of Biology - University of Copenhagen
https://www1.bio.ku.dk/english/research/bms/sbinlab/new-horizons-in-protein-dynamics/
0
5
4
Many thanks to
@pluskal-lab.org
@iocbprague.bsky.social
@elixircz.bsky.social
for two days of excellent talks at
#PragueBioML
!
4 months ago
1
5
1
And now something completely different - nanopores! by
@scimartin.bsky.social
@ethz.ch
#PragueBioML
@elixircz.bsky.social
4 months ago
0
1
0
Erik Andris
@iocbprague.bsky.social
on graph NNs
#PragueBioML
@elixircz.bsky.social
4 months ago
0
1
0
"Second talk" by Anton Bushuiev (
@iocbprague.bsky.social
@pluskal-lab.org
@josef-sivic.bsky.social
) on protein language models
#PragueBioML
@elixircz.bsky.social
4 months ago
0
3
0
Intrinsically disordered proteins by
@tothpetroczylab.bsky.social
#PragueBioML
@elixircz.bsky.social
4 months ago
0
5
0
reposted by
Vojtech Spiwok
IT4Innovations
4 months ago
In 2024, IT4Innovations supported thousands of users and hundreds of research projects. Behind every achievement stand people – our colleagues, partners, and supporters – thank you for making it possible. 🇬🇧
www.it4i.cz/cs/file/e5d7...
#eINFRAcz
0
1
2
Petr Kouba on protein flexibility
#PragueBioML
@elixircz.bsky.social
4 months ago
0
2
0
Joan Planas-Iglesias on protein aggregation
#PragueBioML
@elixircz.bsky.social
4 months ago
0
0
0
Stanislav Mazurenko on evolution and protein design
#PragueBioML
@elixircz.bsky.social
4 months ago
0
0
0
Aleksej Zelezniak on
#AI
driven protein engineering
#PragueBioML
@elixircz.bsky.social
4 months ago
0
1
1
Protein-protein interactions studied by
@cyrilmalbranke.bsky.social
#PragueBioML
@elixircz.bsky.social
4 months ago
0
10
1
Adrian Dobbelstein on DrugFlow
#PragueBioML
@elixircz.bsky.social
4 months ago
0
4
0
Michael Backenköhler on
#drugdesign
#PragueBioML
@elixircz.bsky.social
4 months ago
0
1
0
Programable protein therapeutics by
@pranam.bsky.social
#PragueBioML
@elixircz.bsky.social
4 months ago
0
0
0
Mrunali Manjrekar
@mit.edu
on
#AI
and
#MSMS
#PragueBioML
@elixircz.bsky.social
4 months ago
0
0
1
Roman Bushuiev (
@pluskal-lab.org
@iocbprague.bsky.social
@josef-sivic.bsky.social
) on
#ML
and
#MS
#PragueBioML
@elixircz.bsky.social
4 months ago
0
2
0
Bindcraft presented by
@martinpacesa.bsky.social
#PragueBioML
@elixircz.bsky.social
4 months ago
1
4
0
Elizabeth Mahood
@iocbprague.bsky.social
@mit.edu
on CYP
#PragueBioML
@elixircz.bsky.social
4 months ago
0
2
0
David Harding-Larsen on PRISM enzyme design
#PragueBioML
@elixircz.bsky.social
4 months ago
0
1
0
Conditional enzyme design by
@jsunn-y.bsky.social
(
@caltech.edu
@francesarnold.bsky.social
)
#PragueBioML
@elixircz.bsky.social
4 months ago
0
0
0
Matouš Soldát and Hamsini Ramanathan on terpene synthase design
@iocbprague.bsky.social
#PragueBioML
@elixircz.bsky.social
4 months ago
0
1
0
Raman Samusevich
@iocbprague.bsky.social
on 👃 terpenoids
#PragueBioML
@elixircz.bsky.social
4 months ago
1
1
0
We continue with enzyme design by talk of
@ncorley.bsky.social
#PragueBioML
@elixircz.bsky.social
4 months ago
0
0
0
Designing new enzymes by
#RFdiffusion2
by
@jyim.bsky.social
#PragueBioML
@elixircz.bsky.social
4 months ago
1
3
0
On experiment and AI in enzyme design by
@simonmathis.bsky.social
#PragueBioML
@elixircz.bsky.social
4 months ago
0
1
0
On new enzymatic activities by
@arianemora.bsky.social
(
@francesarnold.bsky.social
lab)
#PragueBioML
@elixircz.bsky.social
4 months ago
0
0
0
On CLIPZyme screening by
@pgmikhael.bsky.social
@mit.edu
#PragueBioML
@elixircz.bsky.social
4 months ago
0
0
0
500 million years of loading slides by
@countablyfinite.bsky.social
@evolutionaryscale.bsky.social
#PragueBioML
@elixircz.bsky.social
4 months ago
0
2
1
reposted by
Vojtech Spiwok
EvolutionaryScale
6 months ago
We're sponsoring the use of ESM3 and EMSC to help researchers engineer improved PETase enzymes in the @AlignBio 2025 Protein Engineering Tournament. Get started using ESMC to predict protein function and ESM3 to generate new enzymes here:
github.com/evolutionary...
add a skeleton here at some point
0
9
4
On
#machinelearning
and
#quantumchemistry
by
@jrezac.bsky.social
@iocbprague.bsky.social
#PragueBioML
@elixircz.bsky.social
4 months ago
0
1
0
BoltzGen
#Boltz
by
@hannes-stark.bsky.social
@mit.edu
#PragueBioML
@elixircz.bsky.social
4 months ago
0
3
0
Carlos G. Acevedo-Rocha on ProteusAI and Denmark
#PragueBioML
@elixircz.bsky.social
4 months ago
0
1
0
On
#Boltz
and
#drugdesign
by
@gcorso.bsky.social
#PragueBioML
@elixircz.bsky.social
4 months ago
0
3
1
Jeremy Wohlwend on
#Bolz
#PragueBioML
@elixircz.bsky.social
4 months ago
1
3
0
A proud sponsor of
#PragueBioML
is
@elixircz.bsky.social
@elixir-europe.org
4 months ago
0
2
1
Butkhard Rost
@tum.de
on AI + code of life
#PragueBioML
@elixircz.bsky.social
4 months ago
0
0
0
Pavlina Rezacova (vice director of
@iocbprague.bsky.social
) kickes off
#PragueBioML
4 months ago
0
1
1
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