Sanketh Vedula
@sankethvedula.bsky.social
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PhD student @ Technion, Israel.
reposted by
Sanketh Vedula
Nature Biotechnology
8 days ago
Experiment-guided AlphaFold3 resolves measurement-consistent protein ensembles -
@istaresearch.bsky.social
@alex-bronstein.bsky.social
@paulschanda.bsky.social
@sankethvedula.bsky.social
www.nature.com/articles/s41...
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Experiment-guided AlphaFold3 resolves measurement-consistent protein ensembles - Nature Biotechnology
A generative model using AlphaFold3 as prior infers protein conformational ensembles consistent with measured experimental data.
https://www.nature.com/articles/s41587-026-03166-5
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reposted by
Sanketh Vedula
over 1 year ago
📢 New preprint, lead by Alex Bronstein,
@sankethvedula.bsky.social
and colleagues: Guiding AlphaFold with experimental data. This approach generates conformational ensembles guided by NMR, X-ray (or whatever) data. I am thrilled to tackle lots of exciting problems with it!
arxiv.org/abs/2502.09372
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Inverse problems with experiment-guided AlphaFold
Proteins exist as a dynamic ensemble of multiple conformations, and these motions are often crucial for their functions. However, current structure prediction methods predominantly yield a single conf...
https://arxiv.org/abs/2502.09372
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Our recent work presented as a talk at the MLSB workshop in NeurIPS.
add a skeleton here at some point
over 1 year ago
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