Calum Gabbutt
@calumgabbutt.bsky.social
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Computational biologist interested in cancer evolution, maths modelling and Bayesian stats.
reposted by
Calum Gabbutt
Trevor Graham
13 days ago
Studying cancer evolution needs multi-region or single cell seq for phylogenetics, right? Amazingly (I think!) we found single-sample bulk methylation suffices, via analysis of "fluctuating methylation". In
@nature.com
today led by brilliant
@calumgabbutt.bsky.social
www.nature.com/articles/s41...
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Fluctuating DNA methylation tracks cancer evolution at clinical scale - Nature
Cancer evolutionary dynamics are quantitatively inferred using a method, EVOFLUx, applied to fluctuating DNA methylation.
https://www.nature.com/articles/s41586-025-09374-4
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Cancer is an evolutionary disease, but does knowing a cancer’s evolutionary past help predict its future? Out today in @nature, we learnt the evolution of 2000 lymphoid cancers and found it was highly correlated with clinical outcomes! (1/7)
rdcu.be/eFrrc
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Fluctuating DNA methylation tracks cancer evolution at clinical scale
Nature - Cancer evolutionary dynamics are quantitatively inferred using a method, EVOFLUx, applied to fluctuating DNA methylation.
https://rdcu.be/eFrrc
13 days ago
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reposted by
Calum Gabbutt
I-X
2 months ago
🚀 AI in Science Fellowships – Applications Now Open! The I-X Centre for AI in Science is recruiting up to 19 fellows to join their prestigious programme and accelerate artificial intelligence research in Engineering, Natural and Mathematical Sciences. 1/5
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LinkedIn
This link will take you to a page that’s not on LinkedIn
https://lnkd.in/d8tZjHEz
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Imperial's Schmidt AI in Science fellowships are now open! As a current fellow, I can highly recommend applying for these prestigious and enriching awards. No prior AI experience needed, just a scientific problem suited to AI. For cancer researchers there are dedicated joint positions with the ICR.
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Apply | Research groups | Imperial College London
https://www.imperial.ac.uk/ix-ai-in-science/apply/
2 months ago
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reposted by
Calum Gabbutt
Trevor Graham
2 months ago
Schmidt Fellowships for
#AI
in
#cancer
research 2025 round is now open. These are pathway to independence fellowships between
@icr.ac.uk
&
@imperialcollegeldn.bsky.social
that support fellows to be competitive for faculty jobs at the end of the 2 year funding.
www.imperial.ac.uk/jobs/search-...
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Search jobs for external candidates | Jobs | Imperial College London
https://www.imperial.ac.uk/jobs/search-jobs/?searchCriteria%5b0%5d%5bkey%5d=keywords&searchCriteria%5b0%5d%5bvalues%5d%5b%5d=schmidt
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reposted by
Calum Gabbutt
Rob Noble
2 months ago
New preprint! Let me tell you a story about trees, caterpillars, brooms, entropy, and getting scooped by 50 years. Rooted trees of all shapes and sizes crop up all over biology, computing and elsewhere. How can we best compare the shapes of these myriad trees? 1/14
arxiv.org/abs/2507.08615
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reposted by
Calum Gabbutt
Alexander Stein
4 months ago
Interested in population genetics of cancer? If so, have a look at our manuscript accepted by
@genetics-gsa.bsky.social
, in which we provide a theoretical assessment of the genetic makeup of cancers before and after treatment!
add a skeleton here at some point
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reposted by
Calum Gabbutt
Trevor Graham
4 months ago
Calling data scientists: we have opening in our Data Science core
@icr.ac.uk
to lead work around cancer spatial biology and single cell analysis. These are staff scientist type positions, ideal for someone who wants to help drive computational research. Apply here:
jobs.icr.ac.uk/vacancies/12...
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Data Scientist in Sutton | The Institute of Cancer Research
View details and apply for this Data Scientist vacancy in Sutton. Salary : Salary range ÂŁ39,805 to ÂŁ49,023 (depending on the experience) Reporting to: Professor Trevor Graham ...
https://jobs.icr.ac.uk/vacancies/1238/data-scientist.html
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If you're a PhD student interested in using maths to understand cancer, this HCEMM summer school in Szeged, Hungary, is an excellent opportunity. Registration is free and local costs are covered, so apply before 15th April.
6 months ago
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This week-long summer school looks set to be an excellent opportunity for to learn about cancer evolution! Bursaries are available for those who require financial assistance, deadline 1st April.
add a skeleton here at some point
7 months ago
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Does the evolutionary history of a cancer predict patient outcome? In our new pre-print, we introduce a powerful new method to measure a cancer’s past using bulk methylation data. In chronic lymphocytic leukaemia (CLL), these inferred histories are highly prognostic! (1/9)
doi.org/10.1101/2023...
almost 2 years ago
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