Florian Plaza Oñate
@fplazaonate.bsky.social
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📥 137
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R&D Bioinformatician at @INRAE MetaGenoPolis
reposted by
Florian Plaza Oñate
Alexandre Almeida
16 days ago
🚨 New pre-print from the lab! We performed a large-scale meta-analysis of the uncultured gut
#microbiome
in >10,000 metagenomes enabling us to identify a new candidate biomarker of health.
www.biorxiv.org/content/10.1...
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Meta-analysis of the uncultured gut microbiome across 11,115 global metagenomes reveals a new candidate biomarker of health
The human gut microbiome plays an important biological role in host health, yet over 60% of gut species remain uncultured and hence inaccessible to experimental manipulation. Here we analysed 11,115 h...
https://www.biorxiv.org/content/10.1101/2025.09.09.675081v1
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Florian Plaza Oñate
Eugen Pfeifer
8 months ago
Excited🚨to share our first work on the human gut phageome
doi.org/10.1101/2025...
Always inspiring to work with
@epcrocha.bsky.social
, Erick D, Camille d'H and everyone else within this super dynamic consortium
@inrae-france.bsky.social
[email protected]
[email protected]
! Many thanks for this great journey!🙌
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Third-generation cephalosporin antibiotics induce phage bursts in the human gut microbiome.
The use of antibiotics disrupts the gut microbiota, potentially leading to long-term health issues and the spread of resistance. To investigate the impact of antibiotics on phage populations, we follo...
https://doi.org/10.1101/2025.02.07.636470
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Florian Plaza Oñate
Guillaume GAUTREAU
8 months ago
1/9 🚨 New preprint alert! Frustrated by strange results with your metagenomic data? Meet CroCoDeEL, an accurate, easy-to-use tool to detect and quantify cross-sample contamination—no need for negative controls or sample positions! 🔗
doi.org/10.1101/2025...
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CroCoDeEL: accurate control-free detection of cross-sample contamination in metagenomic data
Metagenomic sequencing provides profound insights into microbial communities, but it is often compromised by technical biases, including cross-sample contamination. This underexplored phenomenon arise...
https://doi.org/10.1101/2025.01.15.633153
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