Please join us for the next @who.int IPSN Webinar on the Utility of Pathogen Genomics focussing this time on metagenomics as a tool to detect emerging threats. 25/09/25 at 13:00 CET

Just a few days left to apply for PhD positions in the Health Protection Research Unit - Public Health Genomics @imibirmingham.bsky.social. preview-uob.cloud.contensis.com/research/cen... I am offering two projects (on Clostridioides difficile & metagenomics of wastewater and freshwater).

Please register for the latest @who.int IPSN EPI-WIN webinar on current and future perspectives of genomic surveillance of TB - tomorrow - 02:07:25 @ 13:00 CEST

Reminder to join the latest @who.int IPSN EPI-WIN webinar on current and future perspectives of genomic surveillance of mpox - today @ 13:00 CET

AI is poised to accelerate understanding in infectious diseases, but its value needs to be demonstrated through close collaboration between research, industry, society, and policy. Paper free to read: rdcu.be/eaxEw Summary here: www.ox.ac.uk/news/2025-02...

Thanks to huge efforts by Uganda’s Central Public Health Laboratory, Uganda Ministry of Health, UVRI, Africa CDC, & SANBI, UWC the sequence from the Ebola Sudan case in Kampala is now available on Pathoplexus pathoplexus.org/seq/PP_0011C... w full analysis here: virological.org/t/near-real-...

What do you think are the critical features pathogen genomic data-sharing platforms require to meet the public health need? Please participate in this public consultation!

Building on the UShER tree of millions of SARS-CoV-2 genomes maintained by Angie Hinrichs, Hugh Haddox and Georg Angehrn (and others in @matsen.bsky.social lab and @jbloomlab.bsky.social) have looked into how the neutral mutation rate varies along the genome: [1/N] www.biorxiv.org/content/10.1...

Incredibly excited to share that our manuscript was just published in @nature.com ! What a way to start the new year! 🎉 https://buff.ly/4gyYCzx We present phylowave, a framework that enables to learn the fitness dynamics of pathogens from phylogenies. 🧵 A thread... 1/n #IDSky #IDModelling

Please join us at 13:00 CET December 12th for the next edition of the IPSN webinar series 'Pathogen Genomics in Health Emergencies' to hear how genomics can contribute to the understanding of Cholera outbreaks. Register here:

Applied Bioinformatics & Public Health Microbiology (21-23 May 2025) is open for registrations! Spread the word - @happykhan.mstdn.science.ap.brid.gy @pathogenomenick.bsky.social @ewanharrison.bsky.social @wvschaik.bsky.social @ksbakes.bsky.social @firefoxx66.bsky.social @katholt.bsky.social

Please join us at 13:00 CET December 12th for the next edition of the IPSN webinar series 'Pathogen Genomics in Health Emergencies' to hear how genomics can contribute to the understanding of Cholera outbreaks. Register here:

Please join us to hear how genomics is helping in response to the multiple outbreaks of Dengue from the @who hosted International Pathogen Surveillance Network. Register here: echo.zoom.us/webinar/regi...

Come join the group in Utrecht!  I have a post-doc position to fill to work on using microbial genomics and metagenomics to build machine learning models to better understand the spread of pathogens and dissemination of resistance www.uu.nl/en/organisat...

Excited to announce the funding of the Health Holland project ‘Predict and Prevent’ working on the integration of pan-genomics, population dynamics and clinical outcomes to elucidate emerging pathogen threats using machine learning.    www.health-holland.com/project/2023...