@thijsstuyver.bsky.social
📤 47
📥 30
📝 23
reposted by
Jorge Bravo Abad
3 months ago
Predictive chemistry often struggles with scarce data. Surrogate models can help, but should we use their predicted QM descriptors or hidden embeddings? Chen & Stuyver show that hidden spaces usually win—faster, more robust, and data-efficient.
pubs.rsc.org/en/content/a...
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Harnessing surrogate models for data-efficient predictive chemistry: descriptors vs. learned hidden representations
Predictive chemistry often faces data scarcity, limiting the performance of machine learning (ML) models. This is particularly the case for specialized tasks such as reaction rate or selectivity predi...
https://pubs.rsc.org/en/content/articlelanding/2025/dd/d5dd00256g
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New paper from our group out in JCTC! We introduce CYCLO70 — a benchmarking set of 70 challenging cycloaddition reactions (Diels–Alder, dipolar, sigmatropic). 👉
doi.org/10.1021/acs....
(1/6)
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CYCLO70: A New Challenging Pericyclic Benchmarking Set for Kinetics and Thermochemistry Evaluation
Here, a new challenging benchmarking data set for cycloaddition reactions, CYCLO70, is presented and analyzed. CYCLO70 has been generated with the specific aim of being representative of the most chal...
https://doi.org/10.1021/acs.jctc.5c00925
4 months ago
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Harnessing Surrogate Models for Data-efficient Predictive Chemistry: Descriptors vs. Learned Hidden Representations | ChemRxiv -
doi.org/10.26434/che...
7 months ago
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New preprint -- CYCLO70: A New Challenging Pericyclic Benchmarking Set for Kinetics and Thermochemistry Evaluation
t.co/O6309jKaJq
(1/5)
7 months ago
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New preprint from our group: Screening Diels-Alder reaction space to identify candidate reactions for self-healing polymer applications (1/5)
chemrxiv.org/engage/chemr...
8 months ago
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reposted by
ChemRxiv Bot
11 months ago
What can be learned from the electrostatic environments within nitrogenase enzymes? Authors: Thijs Stuyver, Olena Protsenko, Davide Avagliano, Thomas Ward DOI:
10.26434/chemrxiv-2025-dndx6
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Happy to see this nice collaboration with
@moranlabchem.bsky.social
out in @ChemistryEur -- Abiotic Ribonucleoside Formation in Aqueous Microdroplets: Mechanistic Exploration, Acidity, and Electric Field Effects.
@javialra97.bsky.social
chemistry-europe.onlinelibrary.wiley.com/doi/full/10....
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Abiotic Ribonucleoside Formation in Aqueous Microdroplets: Mechanistic Exploration, Acidity, and Electric Field Effects
A computational investigation of the reported abiotic phosphorylation of ribose and the subsequent formation of ribonucleosides reveals that the most plausible reaction mechanism involves the protona...
https://chemistry-europe.onlinelibrary.wiley.com/doi/full/10.1002/ceur.202400093
11 months ago
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Now out in JCTC: Improving the Reliability of, and Confidence in, DFT Functional Benchmarking through Active Learning
@javialra97.bsky.social
pubs.acs.org/doi/full/10....
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Improving the Reliability of, and Confidence in, DFT Functional Benchmarking through Active Learning
Validating the performance of exchange-correlation functionals is vital to ensure the reliability of density functional theory (DFT) calculations. Typically, these validations involve benchmarking dat...
https://pubs.acs.org/doi/full/10.1021/acs.jctc.4c01729
11 months ago
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One more week to apply!
add a skeleton here at some point
11 months ago
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We’re reopening applications! A 5-year position as Data Steward/Research Engineer for the chemistry departments of
@psl-univ.bsky.social
is available. 💼 New deadline: February 7th. 📄 More info & application details below. 🔁 Reposts appreciated! 🙌
12 months ago
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reposted by
Javier E. Alfonso-Ramos
about 1 year ago
What better first post than to share our last two preprints! 🚀 In one, we study how electric fields modulate chemical reactivity, and in the second, we explore a data-efficient strategy for the assembly of more representative benchmarking datasets for DFT validation.
@thijsstuyver.bsky.social
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reposted by
ChemRxiv Bot
about 1 year ago
Abiotic ribonucleoside formation in aqueous microdroplets: mechanistic exploration, acidity, and electric field effects Authors: Maciej Piejko, Javier Emilio Alfonso Ramos, Joseph Moran, Thijs Stuyver DOI:
10.26434/chemrxiv-2024-m39s3
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reposted by
ChemRxiv Bot
about 1 year ago
Improving the reliability of, and confidence in, DFT functional benchmarking through active learning Authors: Javier E. Alfonso-Ramos, Carlo Adamo, Éric Brémond, Thijs Stuyver DOI:
10.26434/chemrxiv-2024-98nc1
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