Carl
@cfbeuchel.bsky.social
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📥 53
📝 12
For those of us R-users who are working with/on
#dnanexus
(specifically the Our Future Health TRE), I've written a small
#rstats
package to interact with their `dx` utility and submit jobs (among other things):
github.com/comp-med/r-o...
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GitHub - comp-med/r-ofhelper: Utility R package for the Our Future Health DNAnexus Trusted Research Environment
Utility R package for the Our Future Health DNAnexus Trusted Research Environment - comp-med/r-ofhelper
https://github.com/comp-med/r-ofhelper
about 1 month ago
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I'm currently writing
#nextflow
workflows to download and process
#GWAS
summary statistics from
@gwascatalog.bsky.social
and other sources. It uses the great
#Rstats
package MungeSumstats for most tasks. Still needs a ton of work but the basic steps work and make the process much less painful. -->
about 1 year ago
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