Our manuscript comparing Nanopore vs. Illumina reads for population-level variant calling and genotyping is now out: journals.asm.org/doi/10.1128/... . This work was led by Andrea Schiffer and @arftrhmn.bsky.social.

Happy to share a new publication on a collaboration with Xindan Wang and @fuquaclay.bsky.social labs. We identified and characterized naturally occurring Agrobacterium strains with fused chromosomes. Did mobile genetic elements play a role in fusion? journals.asm.org/doi/10.1128/...

Please repost! and Save the date for the 13th Annual Yosemite Symbiosis Workshop (April 18-20, 2025). More info at the registration page. REGISTRATION WILL OPEN SOON www.sachslab.com/symbiosis-20...

I have released a command line tool for visualizing and annotating synteny plots called PySyntenyViz. GitHub: github.com/acarafat/PyS... PyPI: pypi.org/project/PySy...