Alok Bharadwaj
@alok-bharadwaj.bsky.social
📤 21
📥 162
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reposted by
Alok Bharadwaj
Arjen Jakobi
2 days ago
New preprint by
@alok-bharadwaj.bsky.social
explaining the workings of SURFER, a simple tool to segment membrane, micelle or nanodisc densities in cryoEM maps. Try it via the
@chimerax.ucsf.edu
ToolShed:
cxtoolshed.rbvi.ucsf.edu/apps/chimera...
Despite LocScale in the name, it works on any map.
add a skeleton here at some point
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reposted by
Alok Bharadwaj
Arjen Jakobi
6 months ago
We finally wrote up the paper for LocScale-2.0.
edu.nl/pvhxv
Please try it out. LocScale is evolving & we are actively building in new features and improvements. Your feedback will help us shape the next steps. Code:
cryotud.github.io/locscale/
Work by
@alok-bharadwaj.bsky.social
and Reinier.
add a skeleton here at some point
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reposted by
Alok Bharadwaj
Arjen Jakobi
9 months ago
Want to try LocScale-2.0 without installing locally? Check out ColabScale: just upload your maps or enter your favourite EMDB ID and run LocScale-2.0 in the cloud.
edu.nl/ur3ge
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reposted by
Alok Bharadwaj
Arjen Jakobi
9 months ago
We are happy to release LocScale2.0: a tool for context-aware, confidence-weighted cryoEM map optimisation. Taking two half maps as input, LcoScale-2.0 produces feature-enhanced maps along with a robust confidence score that guides objective map interpretation.
cryotud.github.io/locscale/
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