Martin Westgate
@rowdynerd.bsky.social
๐ค 1733
๐ฅ 1439
๐ 93
Australian ecologist | Scientific software developer (
#rstats
) | Occasional frogger
reposted by
Martin Westgate
Ian Coldwater ๐ฆ๐ฅ
8 days ago
Today is the 30th anniversary of Hackers
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Iโm thrilled to share that Iโve been selected as a 2025
#ChurchillFellow
, to find ways to improve data quality at ALA & GBIF
www.churchilltrust.com.au/project/to-i...
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To investigate global-scale solutions in biodiversity informatics - Churchill Trust
To investigate global-scale solutions in biodiversity informatics - Public Service โ Federal, State and Local governments and authorities
https://www.churchilltrust.com.au/project/to-investigate-global-scale-solutions-in-biodiversity-informatics/
12 days ago
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reposted by
Martin Westgate
WOMBAT 2025
14 days ago
If you like
#DataViz
or a curious about it, come on September 29 for a one-two punch of hands-on tutorials and and stick around for Nicola Rennie's talk on building effective data visualisations the next day. See the full program & register:
wombat2025.numbat.space
#OpenSource
#RStats
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Belated shot of my outfit for
#WearItPurple
day - turns out my stock of purple outfits leans surprisingly formal, but the socks bring it back a bit ๐
25 days ago
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reposted by
Martin Westgate
WOMBAT 2025
27 days ago
You know what they say: the early bird gets the WOMBAT. ๐ฆ Early Bird registration ends in just a few days!
wombat2025.numbat.space
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Iโll be at day 2 of this, along with
@daxkellie.bsky.social
and
@shandiya.bsky.social
; very excited to hear from these speakers!
add a skeleton here at some point
27 days ago
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reposted by
Martin Westgate
Ian Brennan
3 months ago
๐จ๐ธ Frog Nerds Assemble ๐ธ๐จ Recently we published a paper on the phylogenetics and taxonomy of Australia and New Guinea's tree frogs, the Pelodryadidae. Link here:
tinyurl.com/4udpmxsm
What does this mean for you Litoria-lovers? There's a whole bunch more names to use! Let me explain ...
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Lovely event to mark the end of
#ICCB2025
last night, congrats to the organisers for a fantastic conference!
3 months ago
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@jamesbeedorey.bsky.social
on cleaning biodiversity data using beebdc
#ICCB2025
jbdorey.github.io/BeeBDC/
3 months ago
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Neat work by Lamuel Chung (UQ): Multi-species occupancy models for quantifying quoll distributions from large-scale camera trap studies
#ICCB2025
3 months ago
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This sounds pretty cool - the ability to programmatically download any dataset from a DOI is a great feature, and super important for reproducibility. {galah} has supported this feature for ALA for some time, but weโll aim to add it for GBIF shortly
galah.ala.org.au/R/articles/d...
add a skeleton here at some point
3 months ago
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Thanks to everyone who shared
#rstats
hex stickers so far at
#ICCB2025
! Some very cool projects represented hereโฆ
3 months ago
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Cool remote talk by Millie Chapman on political legacies in GBIF
#ICCB2025
milliechapman.info
www.science.org/doi/10.1126/...
3 months ago
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Spending the morning learning from the Monitoring Biodiversity at Large Scales session at
#ICCB2025
3 months ago
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Great talk by
@hannahsfraser.bsky.social
on assessing condition of bird communities
3 months ago
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@patmnorman.bsky.social
on how to get tree heights out of lidar data at landscape scales
#ICCB2025
3 months ago
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Fantastic talk at
#ICCB2025
by
@shandiya.bsky.social
on our teamsโ work supporting open data *and* code at ALA
3 months ago
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reposted by
Martin Westgate
Dax Kellie
3 months ago
๐จgalah 2.1.2 is on CRAN! ๐ฆ This version fixes a major bug that prevented queries with more complex filters from returning the correct result. It also adds a way to get species conservation status from authoritative lists ๐ Details:
galah.ala.org.au/news/index.h...
#rstats
@rowdynerd.bsky.social
๐
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reposted by
Martin Westgate
Dax Kellie
3 months ago
This mobile-friendly & R-friendly app lets you create species checklists for a specified area ๐๐ฆ๐ฆ๐ฑ It uses global and national data (from GBIF & ALA) to make a list comprehensive & fast! Cool new tool from an awesome group of people made with
#Shiny
&
#rstats๐งช๐
unsw.shinyapps.io/infinitylists/
add a skeleton here at some point
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reposted by
Martin Westgate
Hadley Wickham
3 months ago
Happy 18th birthday ggplot2!
#rstats
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If youโre into
#rstats
& will be at
#ICCB2025
make sure to stop by the Atlas of Living Australia stand! Our new hex stickers just arrivedโฆ
4 months ago
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reposted by
Martin Westgate
Shandiya Balasubramaniam ๐
4 months ago
Excited to be at
#ICCB2025
in 2 weeks! * Sunday 15 workshop: Introducing galah: the Atlas of Living Australia's R Interface for Accessing Biodiversity Data with
@rowdynerd.bsky.social
* Monday 16 talk: Supporting Scientists and Decision-makers to use Biodiversity Data
#conservation
#rstats
๐งช๐
add a skeleton here at some point
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A perfect autumn day in Canberra
6 months ago
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Word
add a skeleton here at some point
6 months ago
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Heading over to ANU shortly to hear my boss talk about the ALA. Tune in here from 12:30 CBR time:
fennerschool.anu.edu.au/news-events/...
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The Atlas of Living Australia โ Future Proofing a National Biodiversity Data Infrastructure
This seminar will explore the Atlas of Living Australia (ALA). The ALA is Australiaโs national biodiversity data infrastructure which harmonises the nationโs biodiversity data to support world-class s...
https://fennerschool.anu.edu.au/news-events/events/atlas-living-australia-future-proofing-national-biodiversity-data-infrastructure
7 months ago
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Public holidays are for baking slightly lumpy cinnamon scrolls
7 months ago
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Enlighten festival in Canberra is a delight! ๐ฆ๐ Just check out the National Gallery on Friday night ๐
7 months ago
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Spotted these two friends outside Parliament House this arvo, very calmly eating seeds and not at all bothered by me pointing a phone at them! Beautiful creatures
7 months ago
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Dudes whereโs the best place to print hex stickers these days? Iโm in Australia if that makes a difference
#rstats
7 months ago
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Iโm low key convinced (worried?) that making *exactly* 24 biscuits each week is one of my top 5 skills
7 months ago
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reposted by
Martin Westgate
Jenn Macalady
7 months ago
Evolving intelligent life took billions of years โ but it may not have been as unlikely as many scientists predicted
theconversation.com/evolving-int...
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Evolving intelligent life took billions of years โ but it may not have been as unlikely as many scientists predicted
Humans evolved late in Earth history. While this timing inspired the conclusion that humanlike life is a cosmic improbability, a new study pushes back.
https://theconversation.com/evolving-intelligent-life-took-billions-of-years-but-it-may-not-have-been-as-unlikely-as-many-scientists-predicted-249114?utm_source=bluesky&utm_medium=bylineblueskybutton
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We had a beautiful visitor to our garden this lunchtime; a ~ metre long brown snake. It took a stroll through the grass before hiding under the raised bed, then out through a gap in the fence. So lovely to have a visit from the neighbours!
7 months ago
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New version of galah is out now (2.1.1)! A few fixes etc but the best bit is a vignette on reproducible data by
@daxkellie.bsky.social
Shows how to: - get a DOI on a download - cite it in your paper - re-download any dataset from a DOI
cran.r-project.org/web/packages...
8 months ago
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Crazy storms *again* this arvo in Canberra. What a summer.
8 months ago
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Thereโs a magnificent old Euc near our place thatโs lost two major branches since December. Iโm really hoping itโs not in trouble. Anyone know how to check if a tree like this is healthy?
8 months ago
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The new series of Lego collectable minifigures just came out in Australia, you know I got the pirate quartermaster. Sheโs super cool, but look at that Cockatoo!! So cute ๐
8 months ago
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Took a drive out to Yass yesterday with the fam. The young one loved the park by the river, great spot for a picnic! Plus old rail bridges ftw ๐
8 months ago
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I spent some of this morning writing from the Hancock Building, aka the ANU Science library. Such a beautiful space! 10/10 would recommend ๐
8 months ago
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reposted by
Martin Westgate
John Holmes
8 months ago
Australia's waterbird populations almost halved in just one year, survey finds
www.abc.net.au/news/2025-01...
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Australia's waterbird populations almost halved in just one year, survey finds
A scientist who has worked on the survey says it is normal for waterbird numbers to go through "booms and busts" in line with flood periods but this year has seen populations dip below their long-term...
https://www.abc.net.au/news/2025-01-19/waterbird-population-almost-halved-survey/104814966
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Crazy storms in Canberra tonight, as evidenced by this leaf, which blew sideways off the tree behind our house with such force it stuck to the window (hail not shown)
8 months ago
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reposted by
Martin Westgate
Dax Kellie
8 months ago
The galah package ๐ฆ lets you use R to download images from Living Atlases around the world! 1. Choose an atlas with `galah_config(atlas = )`
galah.ala.org.au/R/articles/q...
2. Download images with `collect_media()`
galah.ala.org.au/R/articles/d...
#rstats
๐๐ฆ๐ฆ๐๐ฑ (cc
@rowdynerd.bsky.social
)
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Excited to catch up on this! The best Australian science writing of 2024
#booksky
8 months ago
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I learned this week that the browser version of MS Word now defaults to autosuggesting the rest of your sentence. Gross.
add a skeleton here at some point
9 months ago
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End of the week, I had some fun today calculating *exactly* how much data is available from the GBIF node network. Turns out itโs quite a bit - 2.5 billion occurrences total ๐ฎ
9 months ago
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Back in the office today, Moleskine color for 2025 is forest green
9 months ago
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Back to work tomorrow, but pleased I managed to finish this first
9 months ago
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Merry Christmas everyone! I burnt the meringue this year ๐ข so no pavlova, but we still managed a bbq, Eton mess and homemade mango and gingerbread ice creams ๐ฅฉ๐ฅ๐ฅ๐จ
9 months ago
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Today at
#ESAus2024
, the ALA Data & Science teams are demoing {galaxias}, our new R package for sharing biodiversity data. Itโs still in dev, but if you want to check it out, the slides are here:
ala.quarto.pub/intro-to-gal...
I canโt be there ๐ but stop by to ask
@daxkellie.bsky.social
about it!
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Sharing biodiversity data with galaxias
https://ala.quarto.pub/intro-to-galaxias/#/title-slide
9 months ago
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We opened our Christmas present to ourselves early this weekend: a kitchenaid ice cream attachment. This is our first batch of mango ice cream and reader it is delightful
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10 months ago
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This week we released version 2.1.0 of galah, an R package for getting biodiversity data. What's cool is we now support image downloads from a *bunch* of living atlases! Here's a galah in Adelaide by Mononymous on iNaturalist (cc-by-nc 4.0; c/o
www.ala.org.au
)
10 months ago
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