Ji Zhang
@ecoloji.bsky.social
📤 77
📥 115
📝 58
PhD | ecologist | 🌿 | 🍄
pinned post!
The name of this café is quite interesting.😉
2 months ago
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Feynman’s Rainbow, another weekend read.
about 15 hours ago
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Ji Zhang
Michał Filipiak
5 days ago
🧵1/4 PhD opportunity in ecology, biogeochemistry & evolutionary biology. I am looking for a PhD candidate to join a research project on how animals cope with nutritionally imbalanced food and how this shapes matter cycling in ecosystems.
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Enjoying some weekend reading.
7 days ago
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Emergent predictability in microbial ecosystems | Science
www.science.org/doi/abs/10.1...
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Emergent predictability in microbial ecosystems
A long-standing hypothesis of microbial ecology is that simple patterns might persist despite community complexity or even emerge because of it. However, the concept of “emergent simplicity” remains partly intuitive. Here, we defined emergent ...
https://www.science.org/doi/abs/10.1126/science.adr1440
9 days ago
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reposted by
Ji Zhang
Jim Elser
10 days ago
Phosphorus is essential for all life, including the crops we grow for our food. Phosphate fertilizer is essential for high yield agriculture and a massive increase in P mining accompanied the global "Green Revolution" in the 20th century.
#Pweek
(Figure from our book, Phosphorus Past and Future)
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Ecological and genomic variation in ectomycorrhizal fungal exploration types - Mansfield - New Phytologist - Wiley Online Library
nph.onlinelibrary.wiley.com/doi/10.1111/...
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Ecological and genomic variation in ectomycorrhizal fungal exploration types
Ectomycorrhizal fungi (EMF) produce mycelia with variable extension and complexity, which can be classified according to soil ‘exploration types’ (ETs). ETs have received attention as one of the few.....
https://nph.onlinelibrary.wiley.com/doi/10.1111/nph.71157?af=R
12 days ago
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Micro-scale spatial metagenomics opens a new era in microbiome ecology: Trends in Microbiology
www.cell.com/trends/micro...
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Micro-scale spatial metagenomics opens a new era in microbiome ecology
Understanding microbial communities requires moving beyond 2D representations toward a holistic view that couples 3D spatial organization with ecological function, integrating microbial inventories, g...
https://www.cell.com/trends/microbiology/fulltext/S0966-842X%2826%2900064-8
16 days ago
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A comprehensive dated phylogeny of China’s vascular plants reveals a hidden global biodiversity hotspot
rdcu.be/fa4eU
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A comprehensive dated phylogeny of China’s vascular plants reveals a hidden global biodiversity hotspot
Nature Ecology & Evolution - A dated phylogeny of 16,585 vascular plant species native to China reveals three major centres of endemism, including a potential new global biodiversity hotspot.
https://rdcu.be/fa4eU
18 days ago
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Ji Zhang
Trends in Microbiology
18 days ago
The rhizosphere microbiome as a decentralized immune system
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The rhizosphere microbiome as a decentralized immune system
Plant immunity should be reconsidered beyond the boundaries of the plant genome. We propose that the rhizosphere microbiome may function analogously to a decentralized immune system, contributing adaptive defenselike properties and memory effects. In this forum article, we discuss how this perspective reframes immunity as an emergent property of plant–microbiome interactions, shifting the focus from a solitary host toward an integrated holobiont.
http://dlvr.it/TRpHQr
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Ji Zhang
Shingo Miyauchi
19 days ago
❄️Visual Omics Series 15❄️ Out now! Comparative genomics of 129 plant-associated fungi focusing on Antarctic endophytes. Visuals styled after Edward Wilson's Terra Nova Expedition.
@fmartin54.bsky.social
@mycocoroom.bsky.social
@oistedu.bsky.social
👉
shorturl.at/5IM8A
🧪🧬🖥️
#Genomics
#Fungi
#DataViz
🍄
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Cell walls and their role in the plant root microbiome: Trends in Plant Science
www.cell.com/trends/plant...
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Cell walls and their role in the plant root microbiome
Plant roots form a microbiome that interacts at the cell wall extracellular matrix before entering the cell. The root primary and accessory walls present a dynamic, cell-type-dependent scaffold that m...
https://www.cell.com/trends/plant-science/fulltext/S1360-1385%2826%2900029-4
23 days ago
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A roadmap for plant–microbiome breeding to enhance plant stress tolerance
www.cell.com/trends/micro...
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A roadmap for plant–microbiome breeding to enhance plant stress tolerance
Plants constantly form associations with microorganisms, and some are vital for plant performance, especially under stress conditions. Although some microorganisms have been developed into commercial ...
https://www.cell.com/trends/microbiology/fulltext/S0966-842X(26)00038-7
23 days ago
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“Current evidence suggests that pyrazine biosynthesis may be carried out by microbial symbionts. ” Ecology and evolution of pyrazines in insects - Oudendijk - Biological Reviews - Wiley Online Library
onlinelibrary.wiley.com/doi/10.1002/...
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Ecology and evolution of pyrazines in insects
Chemical communication is the oldest and most widespread form of signalling among and within organisms. Among the many compounds involved in such communication, pyrazines – nitrogen-containing hetero...
https://onlinelibrary.wiley.com/doi/10.1002/brv.70160
29 days ago
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Ji Zhang
Trends in Plant Science
about 1 month ago
Beyond nitrogen: phosphate controls root nodule symbiosis commitment
#plantscience
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Beyond nitrogen: phosphate controls root nodule symbiosis commitment
While root nodule symbiosis (RNS) is primarily recognized for nitrogen acquisition, it is heavily influenced by phosphorus levels. In natural agroecosystems, nitrogen limitation frequently co-occurs with phosphorus deficiency, yet the role of phosphorus in modulating RNS remains understudied. Recent research in the legume Phaseolus vulgaris shows that phosphorus starvation suppresses nodulation by downregulating the master regulator gene Nodule Inception, mediated by phosphate-responsive factors such as Phosphate Starvation Response-Like 7. We propose an integrated model where phosphate signaling functions as a metabolic checkpoint, balancing carbon availability, nitrogen demand, and phosphorus status. Elucidating how phosphate scarcity rewires these symbiotic gene networks is essential for sustainable agriculture, allowing for the optimization of symbiotic nitrogen fixation in nutrient-depleted environments.
http://dlvr.it/TRYlkH
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Local ecological knowledge with stewardship sustains medicinal plants used by ethnic minorities in China: Trends in Ecology & Evolution
www.cell.com/trends/ecolo...
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Local ecological knowledge with stewardship sustains medicinal plants used by ethnic minorities in China
Medicinal plants used by ethnic minorities in China—those documented in Chinese medicinal plant knowledge systems and sustaining culturally unique healing traditions, yet systematically marginalized i...
https://www.cell.com/trends/ecology-evolution/fulltext/S0169-5347%2826%2900006-6
about 1 month ago
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reposted by
Ji Zhang
Chao Xiong
about 1 month ago
Excited to share our Review by
@prof-braj-singh.bsky.social
@natrevmicro.nature.com
Impacts of climate extremes on plant pathogens, microbiomes and plant health. We propose an integrated pathway for harnessing microbiomes to address the critical challenges posed by climate extremes.
dlvr.it/TRR2wT
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Ji Zhang
Nature Reviews Microbiology
about 1 month ago
New online! Impacts of climate extremes on plant pathogens, microbiomes and plant health
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Impacts of climate extremes on plant pathogens, microbiomes and plant health
Nature Reviews Microbiology, Published online: 11 March 2026; doi:10.1038/s41579-026-01290-2In this Review, Singh and colleagues discuss the impacts of key climate extremes on soil-borne pathogens, plant microbiomes and host physiology that ultimately determine disease outcomes, as well as the eco-evolutionary mechanisms by which pathogens, hosts and microbiomes may adapt to climate extremes. Finally, they propose an integrated pathway for harnessing microbiomes to address the critical challenges posed by climate extremes.
http://dlvr.it/TRR2wM
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Ji Zhang
Frédérique Reverchon
about 1 month ago
📢 Our article on the avocado
#nectar
#microbiota
is now put in
@jxbotany.bsky.social
! 🥑🌸🦠🐝 The microbiota of avocado floral nectar inhibits pathogens and improves plant fitness
#microsky
#MexicanScience
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The microbiota of avocado floral nectar inhibits pathogens and improves plant fitness
The floral nectar in avocado hosts microbes with anti-pathogenic activity and probiotic properties in a model plant species.
https://academic.oup.com/jxb/advance-article/doi/10.1093/jxb/erag038/8439107?fbclid=Iwb21leAQZH9NjbGNrBBkfhGV4dG4DYWVtAjExAHNydGMGYXBwX2lkDDM1MDY4NTUzMTcyOAABHu5FfkaHEdKeh6xd4j4iShTdkqvhthmyp1jKU8D0EXce6f0Dynj4OvIEneHu_aem_ef8xoAg2rU5gIZMhC6Zq2A&login=false
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A “mushroom” corner in an interesting shop.
about 1 month ago
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Yunyan Temple Pagoda, sometimes called “the Leaning Tower of China”, was completed about two centuries earlier than the Leaning Tower of Pisa.
2 months ago
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reposted by
Ji Zhang
Nature Plants
2 months ago
"The most uncomfortable part for me is that I no longer think that scientific research will resolve the crises that we face." "I keep doing research not because I think it will save us, but because it would be a form of surrender to stop seeking understanding."
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Friendly reminder: With the Chinese New Year holiday is coming, it would be much appreciated if editors could kindly avoid sending review invitations to researchers in China over the coming week.
2 months ago
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Ji Zhang
UMR IAM
2 months ago
Happy International Day of Women and Girls in Science! We are proud to have so many brilliant female scientists in our
#IAM
department! 👩🔬🎓🍄🦠🧫🔬🌳🌲📊 We must never give up on
#equality
,
#diversity
&
#inclusion
💪
#WomenInScience
#WomenInSTEM
#WomenInScienceDay2026
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reposted by
Ji Zhang
New Phytologist
2 months ago
✨ Paper spotlight ✨ (🧵 1/6) Why, when, and how microbes can benefit ecological restorations: Current approaches and future directions
nph.onlinelibrary.wiley.com/doi/10.1111/...
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reposted by
Ji Zhang
Trends in Plant Science
2 months ago
11th February, International Day of Women and Girls in Science: drawing attention to the fact that women are still underrepresented in many scientific disciplines. Watch this space for an upcoming Trends in Plant Science series on women in plant science
www.womeninscienceday.org
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International Day of Women and Girls in Science Official Website
https://www.womeninscienceday.org/
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Ji Zhang
Journal of Experimental Botany
2 months ago
📜 On this #DarwinDay, explore our Darwin Reviews 📜 📇 Darwin Reviews are our most prestigious review series, featuring carefully selected topics from leading plant scientists 📇 🌳 In 2025, we celebrated 75 years of JXB with a special Darwin collection:
academic.oup.com/jxb...
#DarwinDay,
#PlantScience
🧪
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The name of this café is quite interesting.😉
2 months ago
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reposted by
Ji Zhang
Shingo Miyauchi
2 months ago
🟢Visual Omics Series 14🟢 Do the same fungal species behave similarly across distant locations regardless of environment? We examined through multi-omics analysis. Colour theme inspired by Claude Monet's Water Lilies.
@jgi.doe.gov
@oistedu.bsky.social
🔗https://shorturl.at/fp5j9
#fungi
#genomics
🍄
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reposted by
Ji Zhang
Methods in Ecology and Evolution
2 months ago
🤔Looking to make your
#code
more
#reproducible
? Check out our new and improved guide to Reproducible Code! 🧪🌍️ Find it here👇️
buff.ly/10TeNok
@nhcooper123.bsky.social
@britishecologicalsociety.org
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reposted by
Ji Zhang
Cate Macinnis-Ng
3 months ago
All flavours of applied ecologists are welcome to apply!
add a skeleton here at some point
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reposted by
Ji Zhang
Methods in Ecology and Evolution
2 months ago
New special feature!🌍🧪 Here, our guest editors research at the cutting edge of the AI–ecology interface, focusing on work that advances the state of both fields beyond proof-of-concept to true interdisciplinary insight. Read the full collection👇️
buff.ly/GbMxxmW
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reposted by
Ji Zhang
Larry M. York
2 months ago
One year ago I led an effort to standardize microbial imaging at work, procuring a colony doc it imager. We've demonstrated high reliability measures of microbial responses to minerals and to other species. Now, I've created an open-source robotic workcell to do the same. More soon!
add a skeleton here at some point
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Ji Zhang
Joint Genome Institute
2 months ago
This study looks at microbiomes in aerial surfaces of plants and their roles in environmental processes, in order to advance microbiome utility across the bioeconomy.
@ucmerced.bsky.social
🖥️🧬 🦠 🌱
https://jgi.doe.gov/user-science/science-stories/secrets-needles-what-microbes-do-conifer-leaves
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Secrets of the Needles: What Microbes do on Conifer Leaves | Joint Genome Institute
Novel study looks at microbiomes in aerial surfaces of plants, and their roles in plant health and environmental processes
https://jgi.doe.gov/user-science/science-stories/secrets-needles-what-microbes-do-conifer-leaves
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reposted by
Ji Zhang
New Phytologist
2 months ago
#TansleyInsight
: Endophytes with
#mycorrhizal
potentials: biological and ecological implications Yuan et al. 👇 📖
nph.onlinelibrary.wiley.com/doi/10.1111/...
#LatestIssue
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reposted by
Ji Zhang
Shingo Miyauchi
2 months ago
Our preprint on Agaricales comparative genomics is out! 🍄 122 genomes reveal how grassland fungi evolved diverse strategies: Ectomycorrhizal species lost plant-degrading enzymes while saprotrophs expanded them. 👉https://shorturl.at/shWPp
@fmartin54.bsky.social
#Fungi
#Genomics
#SoilEcology
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Climate variability shapes the mutualistic interaction between truffle-like ectomycorrhizal (ECM) fungi and a mycophagous mammal
nsojournals.onlinelibrary.wiley.com/doi/10.1002/...
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Climate variability shapes the mutualistic interaction between truffle‐like ectomycorrhizal (ECM) fungi and a mycophagous mammal
The mutualistic interaction between truffle-like ectomycorrhizal (ECM) fungi and mycophagous mammals is fundamental to forest health, supporting fungal dispersal, soil structure, nutrient cycling, an...
https://nsojournals.onlinelibrary.wiley.com/doi/10.1002/ecog.08410
2 months ago
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besjournals.onlinelibrary.wiley.com/share/AU82VP...
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Dual‐scale drivers of soil biodiversity in agroecosystems: Field management outweighs landscape effects, but both matter
You have to enable JavaScript in your browser's settings in order to use the eReader.
https://besjournals.onlinelibrary.wiley.com/share/AU82VP7T8XVCCXGKYWVJ?target=10.1111/1365-2664.70295
3 months ago
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Ji Zhang
Trends in Plant Science
3 months ago
Beneficial microbes in agriculture: curse or blessing?
#plantscience
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Beneficial microbes in agriculture: curse or blessing?
In modern agriculture, microbial inoculants isolated and collected from all over the world have gained popularity as a means of reducing the amount of fertilizer by increasing the availability of nutrients and mitigating environmental stress that is often connected with climate change. Concerning biocontrol, microbial inoculants are known to be effective in integrated pest management. However, the introduction of alien microbes can lead to the emergence of antagonists of the natural soil microbiota, which might drastically change the latter and ultimately have a negative impact on the whole natural soil ecosystem, causing unforeseeable consequences. We will discuss various aspects of the employment of microbial inoculants in agriculture, with a focus on the largely neglected threat posed by potentially invasive microbes.
http://dlvr.it/TQjKpy
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Ji Zhang
Alberto Orgiazzi
3 months ago
Our new paper is out in
@nature.com
"Pesticide residues alter taxonomic and functional biodiversity in soils" Largest in field assessmnt of pesticide effects on soil life🧬🇪🇺🦠🍄
www.nature.com/articles/s41...
@scienceinnovation.ec.europa.eu
@panospanagos.bsky.social
@mvanderheijden.bsky.social
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Ji Zhang
Francis M. Martin
3 months ago
I'm delighted to inform you that our paper "Ecological genomics of saprotrophy to biotrophy transitions in the genus Clitopilus" was published in IMA Fungus. A long standing collaboration with Zhilin Yuan at RISF, Chinese Academy of Forestry, Hangzhou:
imafungus.pensoft.net/articles.php...
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Ecological genomics of saprotrophy to biotrophy transitions in the genus Clitopilus (Fr. ex Rabenh.) P. Kumm. (Agaricales, Entolomataceae)
Transitions between saprotrophic and biotrophic lifestyles represent pivotal evolutionary events in fungal ecology; however, the genomic and physiological mechanisms underlying such shifts remain poor...
https://imafungus.pensoft.net/articles.php?id=179417
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Ji Zhang
Journal of Applied Ecology
3 months ago
Did you know that we're looking for new Associate Editors to join our Editorial Board? 🌍💭 If you'd like to help shape the publishing landscape of the BES journals, find out more below! 👇
britishecologicalsociety.org/content/appl...
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Ji Zhang
British Ecological Society
3 months ago
The Agricultural Ecology Special Interest Group are excited to invite you to their new monthly online Agro-Ecology Connect coffee mornings, which aim to spark ideas, connections and curiosity within the agro-ecology field. The first session will run on 31 January, aimed at early-career researchers.
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Unique species interactions determine the decomposition activity of fungal communities - Kaschper - Functional Ecology - Wiley Online Library
besjournals.onlinelibrary.wiley.com/doi/10.1111/...
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Unique species interactions determine the decomposition activity of fungal communities
Read the free Plain Language Summary for this article on the Journal blog.
https://besjournals.onlinelibrary.wiley.com/doi/10.1111/1365-2435.70254
3 months ago
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"By considering the relationships between soil biodiversity and ecosystem functioning we can connect small-scale interactions among plants, microorganisms and animals to ecosystem services and planetary sustainability." Soil biodiversity effects on ecosystems
www.nature.com/articles/s44...
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Client Challenge
https://www.nature.com/articles/s44358-025-00123-z
3 months ago
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reposted by
Ji Zhang
Mike Kaspari
3 months ago
A rare gift in science is the ability to conjur a question so that its potential answer is brought into focus. As it is in art. “There’s this Chekhov quote that I’m kind of living by lately. He says a work of art doesn’t have to solve a problem — it just has to formulate it correctly” -G Saunders
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Ji Zhang
ICOM2026
3 months ago
🚨#ICOM2026 Registration is now OPEN🚨
icom2026.org/register/%F0...
💰Early bird rates are available until April 12 🍽️ Conference dinner is included with registration Join IMS for reduced registration fee 👉
mycorrhizas.org/become-a-mem...
#ICOM2026
#mycorrhiza
#IMS
@mycorrhizaims.bsky.social
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Happy Holidays!
4 months ago
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reposted by
Ji Zhang
New Phytologist
4 months ago
Global Russula sequence analysis refines biogeographic patterns and host associations Noffsinger et al.
@chance-est.bsky.social
nph.onlinelibrary.wiley.com/doi/10.1111/...
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reposted by
Ji Zhang
Mireia Gómez-Gallego
4 months ago
The latent presence of Cryptostroma corticale (causal agent of the sooty bark disease) is widespread among French sycamore maple populations. Host density and water deficit seem to drive the silent spread of the pathogen. See our paper:
doi.org/10.1111/ppa....
@umr-iam.bsky.social
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Widespread Latent Presence of Cryptostroma corticale in Sycamore Maple in France
Increasing drought events promote forest disease emergence, exemplified by Sooty Bark Disease (SBD) of Acer pseudoplatanus caused by Cryptostroma corticale. Across six French regions, the pathogen wa....
https://doi.org/10.1111/ppa.70104
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Ji Zhang
Stephanie Watts-Fawkes
4 months ago
Abstracts are open for
#ICOM2026
! I can’t wait to spend a week immersing myself in all things
#mycorrhiza
in beautiful Cairns 🌴 There are so many symposia to choose from - go and have a look!
icom2026.org/symposia/
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