Ivan Tolstoganov
@tolyan.bsky.social
📤 9
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reposted by
Ivan Tolstoganov
Kristoffer Sahlin
about 1 month ago
1/ Our paper on Multi-Context Seeds is now out, with
@tolyan.bsky.social
spearheading the work and contributions from Nicolas and
@marcelm.net
. We introduce a new seeding concept that improves read alignment accuracy while maintaining speed.
link.springer.com/article/10.1...
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Multi-context seeds enable fast and high-accuracy read mapping - Genome Biology
A key step in sequence similarity search is to identify shared seeds between a query and a reference sequence. A well-known tradeoff is that longer seeds offer fast searches but reduce sensitivity in ...
https://link.springer.com/article/10.1186/s13059-026-04017-x
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